These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3995#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1583 fasta sequence [CCTTTTTTCTTTCGTGCCCTAGCATTCTGCTTAGCCACACACAGCCTGTCGACCTTTTCAGCATTACTAGTTTACTACCTTTTCTTATCTTTCGGTTGGCTCCTGCTGTTTCTAAAAAGGGATGTTGTTTGCTTCATAAGTATGAGAAAGAGCACCTGGCTGCTACATCCTACTCCAAACTGCCTTCCTCAGAAGTCTCTCATAGTTAGGACCTTCACTGCTGACAAGTGAAATGAGTCATGGGTGCTGAGGAGAGATTTGTGAAAGCTTCGTCCCATACTGTGCCCTTGCAAATATATGGAGGTTCCAAGTGTTCATGACCTGTAACCGAAGGGGAGGGAAAATGCAAGGCAAGCAGCTGGAACATGAGTTGCAAGCTTTCAGGGATGGCTACTGATTTATTTGGCCTTCATAGAATCCTCTCTTCATTGTTGGAGATAGAGGGAACAAGAACCACTAGAGAGATAAAAAGTAAAGATTCTATTCAGAAACTAGCCAAAGTATTGCTGAAAGCTAATTGGCAAAAGGATTTACACCACATCTTGGTAGAGCCAATGGAGAAATCCAAACAAGACAGCAGGGAATCAGTTCGGAGAACAATCATGGAGCATGATGAAGTCTTCAGACAGCAGGTGCATGAACTGCATCGACTATATCGTGTACAAAAATCATTGATGGCTGAACTAGGAGGTGAGAAGCACAGGTTTCAATCAAGGACAGGAGAAACTCAAGAAATGATGCAAGGGCCCCTGTCAAACCTCAAGAATAGCCCCTCTACATCAGAGACAACCCAATCTGCTCATCTTGGTAGCACACAACACTGTGCTCCAGAGCAAGTTCCTGAGCATTCAATTCTTCAAGAATACAAACCAGCAACATGCCTAAACTTCTTCACTGAAGAAACCTCAAGAACACAAGAATTTAGACGAGAAGGTGGTAGATCAACTGGAGGTGAAAATTGGAGTGCTTCTGACCCTTCCGTAGAGAATGATCTTGACCTCAAACTAACAATTGGCCCCAGTTTGCATGCAACAAAAGCACCACACTGGCTCTTCTCAGGAAGCAGGGAAAGAAATCCTTCTGGTCAGCATCGATGACAAAAAGCTGGCATTGTAGAACAGTTAGTTGGATGAC-AAAAAAGAGAGGAAGCAGAAGCCTCCTAGTCCTAGCAATGGAAGGCAACACTTCCAAGATATATCATCAATGCAACCTAGCCTCCAAATTTTGATCAGAGTTAAGCCTCGATCATGAGTGATCTGTGTGCAAACCATAGAGTGTAGCAGAACTAGGATTTGCTAGGAGCACATTATTGTAATGTCATGATGAGCTTTACCAACGATTTGGCTCTTGTTTGTCCTCTCTTCAATTCAGACAGGAAGAGAACAAACATTACTGAGGAAGTATCAAATTTGAAAAGAGCAAAATAGTTCCTGACTTCAGTCTTCCTGATGCAGTTGTTATATCAGTCGTCATATCGGTCTTCCATGATTGGTTATTTCTTATTTACATTTCTTTGTCTGCATATCCATGTACTCAGGTAATTCTTCAAAATGAATATGACTTTTTGGCGATCAAATATCCAA] [+] EMBL AK120261 [CCTTTTTTCTTTCGTGCCCTAGCATTCTGCTTAGCCACACACAGCCTGTCGACCTTTTCAGCATTACTAGTTTACTACCTTTTCTTATCTTTCGGTTGGCTCCTGCTGTTTCTAAAAAGGGATGTTGTTTGCTTCATAAGTATGAGAAAGAGCACCTGGCTGCTACATCCTACTCCAAACTGCCTTCCTCAGAAGTCTCTCATAGTTAGGACCTTCACTGCTGACAAGTGAAATGAGTCATGGGTGCTGAGGAGAGATTTGTGAAAGCTTCGTCCCATACTGTGCCCTTGCAAATATATGGAGGTTCCAAGTGTTCATGACCTGTAACCGAAGGGGAGGGAAAATGCAAGGCAAGCAGCTGGAACATGAGTTGCAAGCTTTCAGGGATGGCTACTGATTTATTTGGCCTTCATAGAATCCTCTCTTCATTGTTGGAGATAGAGGGAACAAGAACCACTAGAGAGATAAAAAGTAAAGATTCTATTCAGAAACTAGCCAAAGTATTGCTGAAAGCTAATTGGCAAAAGGATTTACACCACATCTTGGTAGAGCCAATGGAGAAATCCAAACAAGACAGCAGGGAATCAGTTCGGAGAACAATCATGGAGCATGATGAAGTCTTCAGACAGCAGGTGCATGAACTGCATCGACTATATCGTGTACAAAAATCATTGATGGCTGAACTAGGAGGTGAGAAGCACAGGTTTCAATCAAGGACAGGAGAAACTCAAGAAATGATGCAAGGGCCCCTGTCAAACCTCAAGAATAGCCCCTCTACATCAGAGACAACCCAATCTGCTCATCTTGGTAGCACACAACACTGTGCTCCAGAGCAAGTTCCTGAGCATTCAATTCTTCAAGAATACAAACCAGCAACATGCCTAAACTTCTTCACTGAAGAAACCTCAAGAACACAAGAATTTAGACGAGAAGGTGGTAGATCAACTGGAGGTGAAAATTGGAGTGCTTCTGACCCTTCCGTAGAGAATGATCTTGACCTCAAACTAACAATTGGCCCCAGTTTGCATGCAACAAAAGCACCACACTGGCTCTTCTCAGGAAGCAGGGAAAGAAATCCTTCTGGTCAGCATCGATGACAAAAAGCTGGCATTGTAGAACAGTTAGTTGGATGAC AAAAAAGAGAGGAAGCAGAAGCCTCCTAGTCCTAGCAATGGAAGGCAACACTTCCAAGATATATCATCAATGCAACCTAGCCTCCAAATTTTGATCAGAGTTAAGCCTCGATCATGAGTGATCTGTGTGCAAACCATAGAGTGTAGCAGAACTAGGATTTGCTAGGAGCACATTATTGTAATGTCATGATGAGCTTTACCAACGATTTGGCTCTTGTTTGTCCTCTCTTCAATTCAGACAGGAAGAGAACAAACATTACTGAGGAAGTATCAAATTTGAAAAGAGCAAAATAGTTCCTGACTTCAGTCTTCCTGATGCAGTTGTTATATCAGTCGTCATATCGGTCTTCCATGATTGGTTATTTCTTATTTACATTTCTTTGTCTGCATATCCATGTACTCAGGTAATTCTTCAAAATGAATATGACTTTTTGGCGATCAAATATCCAA] [+] EMBL AK065599 [ GACCTTCACTGCTGACAAGTGAAATGAGTCATGGGTGCTGAGGAGAGATTTGTGAAAGCTTCGTCCCATACTGTGCCCTTGCAAATATATGGAGGTTCCAAGTGTTCATGACCTGTAACCGAAGGGGAGGGAAAATGCAAGGCAAGCAGCTGGAACATGAGTTGCAAGCTTTCAGGGATGGCTACTGATTTATTTGGCCTTCATAGAATCCTCTCTTCATTGTTGGAGATAGAGGGAACAAGAACCACTAGAGAGATAAAAAGTAAAGATTCTATTCAGAAACTAGCCAAAGTATTGCTGAAAGCTAATTGGCAAAAGGATTTACACCACATCTTGGTAGAGCCAATGGAGAAATCCAAACAAGACAGCAGGGAATCAGTTCGGAGAACAATCATGGAGCATGATGAAGTCTTCAGACAGCAGGTGCATGAACTGCATCGACTATATCGTGTACAAAAATCATTGATGGCTGAACTAGGAGGTGAGAAGCACAGGTTTCAATCAAGGACAGGAGAAACTCAAGAAATGATGCAAGGGCCCCTGTCAAACCTCAAGAATAGCCCCTCTACATCAGAGACAACCCAATCTGCTCATCTTGGTAGCACACAACACTGTGCTCCAGAGCAAGTTCCTGAGCATTCAATTCTTCAAGAATACAAACCAGCAACATGCCTAAACTTCTTCACTGAAGAAACCTCAAGAACACAAGAATTTAGACGAGAAGGTGGTAGATCAACTGGAGGTGAAAATTGGAGTGCTTCTGACCCTTCCGTAGAGAATGATCTTGACCTCAAACTAACAATTGGCCCCAGTTTGCATGCAACAAAAGCACCACACTGGCTCTTCTCAGGAAGCAGGGAAAGAAATCCTTCTGGTCAGCATCGATGACAAAAAGCTGGCATTGTAGAACAGTTAGTTGGATGACAAAAAAAGAGAGGAAGCAGAAGCCTCCTAGTCCTAGCAATGGAAGGCAACACTTCCAAGATATATCATCAATGCAACCTAGCCTCCAAATTTTGATCAGAGTTAAGCCTCGATCATGAGTGATCTGTGTGCAAACCATAGAGTGTAGCAGAACTAGGATTTGCTAGGAGCACATTATTGTAATGTCATGATGAGCTTTACCAACGATTTGGCTCTTGTTTGTCCTCTCTTCAATTCAGACAGGAAGAGAACAAACATTACTGAGGAAGTATCAAATTTGAAAAGAGCAAAATAGTTCCTGACTTCAGTCTTCCTGATGCAGTTGTTATATCAGTCGTCATATCGGTCTTCCATGATTGGTTATTTCTTATTTACATTTCTTTGTCTGCATATCCATGTACTCAGGTAATTCTTCAATATGAATATGACTT ] consensusID : consensus_3995#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence [GCATGATGAAGTCTTCAGACAGCAGGTGCATGAACTGCATCGACTATATCGTGTACAAAAATCATTGATGGCTGAACTAGGAGGTGAGAAGCACAGGTTTCAATCAAGGACAGGAGAAACTCAAGAAATGATGCAAGGGCCCCTGTCAAACCTCAAGAATAGCCCCTCTACATCAGAGACAACCCAATCTGCTCATCTTGGTAGCACACAACACTGTGCTCCAGAGCAAGTTCCTGAGCATTCAATTCTTCAAGAATACAAACCAGCAACATGCCTAAACTTCTTCACTGAAGAAACCTCAAGAACACAAGAATTTAGACGAGAAGGTGGTAGATCAACTGGAGGTGAAAATTGGAGTGCTTCTGACCCTTCCGTAGAGAATGATCTTGACCTCAAACTAACAATTGGCCCCAGTTTGCATGCAACAAAAGCACCACACTGGCTCTTCTCNNNNNGCANNGAANNNNNTCCTTCTGGTCAGCATCGATGACNAAAAGCTGGCATTGTNNNNNNGNNNNNTGGATGANNNN] [+] EMBL CF196982 [GCATGATGAAGTCTTCAGACAGCAGGTGCATGAACTGCATCGACTATATCGTGTACAAAAATCATTGATGGCTGAACTAGGAGGTGAGAAGCACAGGTTTCAATCAAGGACAGGAGAAACTCAAGAAATGATGCAAGGGCCCCTGTCAAACCTCAAGAATAGCCCCTCTACATCAGAGACAACCCAATCTGCTCATCTTGGTAGCACACAACACTGTGCTCCAGAGCAAGTTCCTGAGCATTCAATTCTTCAAGAATACAAACCAGCAACATGCCTAAACTTCTTCACTGAAGAAACCTCAAGAACACAAGAATTTAGACGAGAAGGTGGTAGATCAACTGGAGGTGAAAATTGGAGTGCTTCTGACCCTTCCGTAGAGAATGATCTTGACCTCAAACTAACAATTGGCCCCAGTTTGCATGCAACAAAAGCACCACACTGGCTCTTCTCNNNNNGCANNGAANNNNNTCCTTCTGGTCAGCATCGATGACNAAAAGCTGGCATTGTNNNNNNGNNNNNTGGATGANNNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3995#0 CCTTTTTTCTTTCGTGCCCTAGCATTCTGCTTAGCCACACACAGCCTGTCGACCTTTTCA 60 consensus_3995#1 ------------------------------------------------------------ consensus_3995#0 GCATTACTAGTTTACTACCTTTTCTTATCTTTCGGTTGGCTCCTGCTGTTTCTAAAAAGG 120 consensus_3995#1 ------------------------------------------------------------ consensus_3995#0 GATGTTGTTTGCTTCATAAGTATGAGAAAGAGCACCTGGCTGCTACATCCTACTCCAAAC 180 consensus_3995#1 ------------------------------------------------------------ consensus_3995#0 TGCCTTCCTCAGAAGTCTCTCATAGTTAGGACCTTCACTGCTGACAAGTGAAATGAGTCA 240 consensus_3995#1 ------------------------------------------------------------ consensus_3995#0 TGGGTGCTGAGGAGAGATTTGTGAAAGCTTCGTCCCATACTGTGCCCTTGCAAATATATG 300 consensus_3995#1 ------------------------------------------------------------ consensus_3995#0 GAGGTTCCAAGTGTTCATGACCTGTAACCGAAGGGGAGGGAAAATGCAAGGCAAGCAGCT 360 consensus_3995#1 ------------------------------------------------------------ consensus_3995#0 GGAACATGAGTTGCAAGCTTTCAGGGATGGCTACTGATTTATTTGGCCTTCATAGAATCC 420 consensus_3995#1 ------------------------------------------------------------ consensus_3995#0 TCTCTTCATTGTTGGAGATAGAGGGAACAAGAACCACTAGAGAGATAAAAAGTAAAGATT 480 consensus_3995#1 ------------------------------------------------------------ consensus_3995#0 CTATTCAGAAACTAGCCAAAGTATTGCTGAAAGCTAATTGGCAAAAGGATTTACACCACA 540 consensus_3995#1 ------------------------------------------------------------ consensus_3995#0 TCTTGGTAGAGCCAATGGAGAAATCCAAACAAGACAGCAGGGAATCAGTTCGGAGAACAA 600 consensus_3995#1 ------------------------------------------------------------ consensus_3995#0 TCATGGAGCATGATGAAGTCTTCAGACAGCAGGTGCATGAACTGCATCGACTATATCGTG 660 consensus_3995#1 -------GCATGATGAAGTCTTCAGACAGCAGGTGCATGAACTGCATCGACTATATCGTG 53 ***************************************************** consensus_3995#0 TACAAAAATCATTGATGGCTGAACTAGGAGGTGAGAAGCACAGGTTTCAATCAAGGACAG 720 consensus_3995#1 TACAAAAATCATTGATGGCTGAACTAGGAGGTGAGAAGCACAGGTTTCAATCAAGGACAG 113 ************************************************************ consensus_3995#0 GAGAAACTCAAGAAATGATGCAAGGGCCCCTGTCAAACCTCAAGAATAGCCCCTCTACAT 780 consensus_3995#1 GAGAAACTCAAGAAATGATGCAAGGGCCCCTGTCAAACCTCAAGAATAGCCCCTCTACAT 173 ************************************************************ consensus_3995#0 CAGAGACAACCCAATCTGCTCATCTTGGTAGCACACAACACTGTGCTCCAGAGCAAGTTC 840 consensus_3995#1 CAGAGACAACCCAATCTGCTCATCTTGGTAGCACACAACACTGTGCTCCAGAGCAAGTTC 233 ************************************************************ consensus_3995#0 CTGAGCATTCAATTCTTCAAGAATACAAACCAGCAACATGCCTAAACTTCTTCACTGAAG 900 consensus_3995#1 CTGAGCATTCAATTCTTCAAGAATACAAACCAGCAACATGCCTAAACTTCTTCACTGAAG 293 ************************************************************ consensus_3995#0 AAACCTCAAGAACACAAGAATTTAGACGAGAAGGTGGTAGATCAACTGGAGGTGAAAATT 960 consensus_3995#1 AAACCTCAAGAACACAAGAATTTAGACGAGAAGGTGGTAGATCAACTGGAGGTGAAAATT 353 ************************************************************ consensus_3995#0 GGAGTGCTTCTGACCCTTCCGTAGAGAATGATCTTGACCTCAAACTAACAATTGGCCCCA 1020 consensus_3995#1 GGAGTGCTTCTGACCCTTCCGTAGAGAATGATCTTGACCTCAAACTAACAATTGGCCCCA 413 ************************************************************ consensus_3995#0 GTTTGCATGCAACAAAAGCACCACACTGGCTCTTCTCAGGAAGCAGGGAAAGAAATCCTT 1080 consensus_3995#1 GTTTGCATGCAACAAAAGCACCACACTGGCTCTTCTCNNNNNGCANNGAANNNNNTCCTT 473 ************************************* *** *** ***** consensus_3995#0 CTGGTCAGCATCGATGACAAAAAGCTGGCATTGTAGAACAGTTAGTTGGATGACAAAAAA 1140 consensus_3995#1 CTGGTCAGCATCGATGACNAAAAGCTGGCATTGTNNNNNNGNNNNNTGGATGANNNN--- 530 ****************** *************** * ******* consensus_3995#0 GAGAGGAAGCAGAAGCCTCCTAGTCCTAGCAATGGAAGGCAACACTTCCAAGATATATCA 1200 consensus_3995#1 ------------------------------------------------------------ consensus_3995#0 TCAATGCAACCTAGCCTCCAAATTTTGATCAGAGTTAAGCCTCGATCATGAGTGATCTGT 1260 consensus_3995#1 ------------------------------------------------------------ consensus_3995#0 GTGCAAACCATAGAGTGTAGCAGAACTAGGATTTGCTAGGAGCACATTATTGTAATGTCA 1320 consensus_3995#1 ------------------------------------------------------------ consensus_3995#0 TGATGAGCTTTACCAACGATTTGGCTCTTGTTTGTCCTCTCTTCAATTCAGACAGGAAGA 1380 consensus_3995#1 ------------------------------------------------------------ consensus_3995#0 GAACAAACATTACTGAGGAAGTATCAAATTTGAAAAGAGCAAAATAGTTCCTGACTTCAG 1440 consensus_3995#1 ------------------------------------------------------------ consensus_3995#0 TCTTCCTGATGCAGTTGTTATATCAGTCGTCATATCGGTCTTCCATGATTGGTTATTTCT 1500 consensus_3995#1 ------------------------------------------------------------ consensus_3995#0 TATTTACATTTCTTTGTCTGCATATCCATGTACTCAGGTAATTCTTCAAAATGAATATGA 1560 consensus_3995#1 ------------------------------------------------------------ consensus_3995#0 CTTTTTGGCGATCAAATATCCAA 1583 consensus_3995#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||