cluster # 3995

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Oryza sativa
cluster # 3995 cluster # 3995 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3995#0 length = 1583 sequences # 2

consensus_3995#1 length = 530 sequences # 1

consensusID : consensus_3995#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1583
fasta sequence

                              [CCTTTTTTCTTTCGTGCCCTAGCATTCTGCTTAGCCACACACAGCCTGTCGACCTTTTCAGCATTACTAGTTTACTACCTTTTCTTATCTTTCGGTTGGCTCCTGCTGTTTCTAAAAAGGGATGTTGTTTGCTTCATAAGTATGAGAAAGAGCACCTGGCTGCTACATCCTACTCCAAACTGCCTTCCTCAGAAGTCTCTCATAGTTAGGACCTTCACTGCTGACAAGTGAAATGAGTCATGGGTGCTGAGGAGAGATTTGTGAAAGCTTCGTCCCATACTGTGCCCTTGCAAATATATGGAGGTTCCAAGTGTTCATGACCTGTAACCGAAGGGGAGGGAAAATGCAAGGCAAGCAGCTGGAACATGAGTTGCAAGCTTTCAGGGATGGCTACTGATTTATTTGGCCTTCATAGAATCCTCTCTTCATTGTTGGAGATAGAGGGAACAAGAACCACTAGAGAGATAAAAAGTAAAGATTCTATTCAGAAACTAGCCAAAGTATTGCTGAAAGCTAATTGGCAAAAGGATTTACACCACATCTTGGTAGAGCCAATGGAGAAATCCAAACAAGACAGCAGGGAATCAGTTCGGAGAACAATCATGGAGCATGATGAAGTCTTCAGACAGCAGGTGCATGAACTGCATCGACTATATCGTGTACAAAAATCATTGATGGCTGAACTAGGAGGTGAGAAGCACAGGTTTCAATCAAGGACAGGAGAAACTCAAGAAATGATGCAAGGGCCCCTGTCAAACCTCAAGAATAGCCCCTCTACATCAGAGACAACCCAATCTGCTCATCTTGGTAGCACACAACACTGTGCTCCAGAGCAAGTTCCTGAGCATTCAATTCTTCAAGAATACAAACCAGCAACATGCCTAAACTTCTTCACTGAAGAAACCTCAAGAACACAAGAATTTAGACGAGAAGGTGGTAGATCAACTGGAGGTGAAAATTGGAGTGCTTCTGACCCTTCCGTAGAGAATGATCTTGACCTCAAACTAACAATTGGCCCCAGTTTGCATGCAACAAAAGCACCACACTGGCTCTTCTCAGGAAGCAGGGAAAGAAATCCTTCTGGTCAGCATCGATGACAAAAAGCTGGCATTGTAGAACAGTTAGTTGGATGAC-AAAAAAGAGAGGAAGCAGAAGCCTCCTAGTCCTAGCAATGGAAGGCAACACTTCCAAGATATATCATCAATGCAACCTAGCCTCCAAATTTTGATCAGAGTTAAGCCTCGATCATGAGTGATCTGTGTGCAAACCATAGAGTGTAGCAGAACTAGGATTTGCTAGGAGCACATTATTGTAATGTCATGATGAGCTTTACCAACGATTTGGCTCTTGTTTGTCCTCTCTTCAATTCAGACAGGAAGAGAACAAACATTACTGAGGAAGTATCAAATTTGAAAAGAGCAAAATAGTTCCTGACTTCAGTCTTCCTGATGCAGTTGTTATATCAGTCGTCATATCGGTCTTCCATGATTGGTTATTTCTTATTTACATTTCTTTGTCTGCATATCCATGTACTCAGGTAATTCTTCAAAATGAATATGACTTTTTGGCGATCAAATATCCAA]

[+] EMBL AK120261             [CCTTTTTTCTTTCGTGCCCTAGCATTCTGCTTAGCCACACACAGCCTGTCGACCTTTTCAGCATTACTAGTTTACTACCTTTTCTTATCTTTCGGTTGGCTCCTGCTGTTTCTAAAAAGGGATGTTGTTTGCTTCATAAGTATGAGAAAGAGCACCTGGCTGCTACATCCTACTCCAAACTGCCTTCCTCAGAAGTCTCTCATAGTTAGGACCTTCACTGCTGACAAGTGAAATGAGTCATGGGTGCTGAGGAGAGATTTGTGAAAGCTTCGTCCCATACTGTGCCCTTGCAAATATATGGAGGTTCCAAGTGTTCATGACCTGTAACCGAAGGGGAGGGAAAATGCAAGGCAAGCAGCTGGAACATGAGTTGCAAGCTTTCAGGGATGGCTACTGATTTATTTGGCCTTCATAGAATCCTCTCTTCATTGTTGGAGATAGAGGGAACAAGAACCACTAGAGAGATAAAAAGTAAAGATTCTATTCAGAAACTAGCCAAAGTATTGCTGAAAGCTAATTGGCAAAAGGATTTACACCACATCTTGGTAGAGCCAATGGAGAAATCCAAACAAGACAGCAGGGAATCAGTTCGGAGAACAATCATGGAGCATGATGAAGTCTTCAGACAGCAGGTGCATGAACTGCATCGACTATATCGTGTACAAAAATCATTGATGGCTGAACTAGGAGGTGAGAAGCACAGGTTTCAATCAAGGACAGGAGAAACTCAAGAAATGATGCAAGGGCCCCTGTCAAACCTCAAGAATAGCCCCTCTACATCAGAGACAACCCAATCTGCTCATCTTGGTAGCACACAACACTGTGCTCCAGAGCAAGTTCCTGAGCATTCAATTCTTCAAGAATACAAACCAGCAACATGCCTAAACTTCTTCACTGAAGAAACCTCAAGAACACAAGAATTTAGACGAGAAGGTGGTAGATCAACTGGAGGTGAAAATTGGAGTGCTTCTGACCCTTCCGTAGAGAATGATCTTGACCTCAAACTAACAATTGGCCCCAGTTTGCATGCAACAAAAGCACCACACTGGCTCTTCTCAGGAAGCAGGGAAAGAAATCCTTCTGGTCAGCATCGATGACAAAAAGCTGGCATTGTAGAACAGTTAGTTGGATGAC AAAAAAGAGAGGAAGCAGAAGCCTCCTAGTCCTAGCAATGGAAGGCAACACTTCCAAGATATATCATCAATGCAACCTAGCCTCCAAATTTTGATCAGAGTTAAGCCTCGATCATGAGTGATCTGTGTGCAAACCATAGAGTGTAGCAGAACTAGGATTTGCTAGGAGCACATTATTGTAATGTCATGATGAGCTTTACCAACGATTTGGCTCTTGTTTGTCCTCTCTTCAATTCAGACAGGAAGAGAACAAACATTACTGAGGAAGTATCAAATTTGAAAAGAGCAAAATAGTTCCTGACTTCAGTCTTCCTGATGCAGTTGTTATATCAGTCGTCATATCGGTCTTCCATGATTGGTTATTTCTTATTTACATTTCTTTGTCTGCATATCCATGTACTCAGGTAATTCTTCAAAATGAATATGACTTTTTGGCGATCAAATATCCAA]
[+] EMBL AK065599             [                                                                                                                                                                                                                 GACCTTCACTGCTGACAAGTGAAATGAGTCATGGGTGCTGAGGAGAGATTTGTGAAAGCTTCGTCCCATACTGTGCCCTTGCAAATATATGGAGGTTCCAAGTGTTCATGACCTGTAACCGAAGGGGAGGGAAAATGCAAGGCAAGCAGCTGGAACATGAGTTGCAAGCTTTCAGGGATGGCTACTGATTTATTTGGCCTTCATAGAATCCTCTCTTCATTGTTGGAGATAGAGGGAACAAGAACCACTAGAGAGATAAAAAGTAAAGATTCTATTCAGAAACTAGCCAAAGTATTGCTGAAAGCTAATTGGCAAAAGGATTTACACCACATCTTGGTAGAGCCAATGGAGAAATCCAAACAAGACAGCAGGGAATCAGTTCGGAGAACAATCATGGAGCATGATGAAGTCTTCAGACAGCAGGTGCATGAACTGCATCGACTATATCGTGTACAAAAATCATTGATGGCTGAACTAGGAGGTGAGAAGCACAGGTTTCAATCAAGGACAGGAGAAACTCAAGAAATGATGCAAGGGCCCCTGTCAAACCTCAAGAATAGCCCCTCTACATCAGAGACAACCCAATCTGCTCATCTTGGTAGCACACAACACTGTGCTCCAGAGCAAGTTCCTGAGCATTCAATTCTTCAAGAATACAAACCAGCAACATGCCTAAACTTCTTCACTGAAGAAACCTCAAGAACACAAGAATTTAGACGAGAAGGTGGTAGATCAACTGGAGGTGAAAATTGGAGTGCTTCTGACCCTTCCGTAGAGAATGATCTTGACCTCAAACTAACAATTGGCCCCAGTTTGCATGCAACAAAAGCACCACACTGGCTCTTCTCAGGAAGCAGGGAAAGAAATCCTTCTGGTCAGCATCGATGACAAAAAGCTGGCATTGTAGAACAGTTAGTTGGATGACAAAAAAAGAGAGGAAGCAGAAGCCTCCTAGTCCTAGCAATGGAAGGCAACACTTCCAAGATATATCATCAATGCAACCTAGCCTCCAAATTTTGATCAGAGTTAAGCCTCGATCATGAGTGATCTGTGTGCAAACCATAGAGTGTAGCAGAACTAGGATTTGCTAGGAGCACATTATTGTAATGTCATGATGAGCTTTACCAACGATTTGGCTCTTGTTTGTCCTCTCTTCAATTCAGACAGGAAGAGAACAAACATTACTGAGGAAGTATCAAATTTGAAAAGAGCAAAATAGTTCCTGACTTCAGTCTTCCTGATGCAGTTGTTATATCAGTCGTCATATCGGTCTTCCATGATTGGTTATTTCTTATTTACATTTCTTTGTCTGCATATCCATGTACTCAGGTAATTCTTCAATATGAATATGACTT                    ]




>consensus_3995#0
CCTTTTTTCTTTCGTGCCCTAGCATTCTGCTTAGCCACACACAGCCTGTCGACCTTTTCA
GCATTACTAGTTTACTACCTTTTCTTATCTTTCGGTTGGCTCCTGCTGTTTCTAAAAAGG
GATGTTGTTTGCTTCATAAGTATGAGAAAGAGCACCTGGCTGCTACATCCTACTCCAAAC
TGCCTTCCTCAGAAGTCTCTCATAGTTAGGACCTTCACTGCTGACAAGTGAAATGAGTCA
TGGGTGCTGAGGAGAGATTTGTGAAAGCTTCGTCCCATACTGTGCCCTTGCAAATATATG
GAGGTTCCAAGTGTTCATGACCTGTAACCGAAGGGGAGGGAAAATGCAAGGCAAGCAGCT
GGAACATGAGTTGCAAGCTTTCAGGGATGGCTACTGATTTATTTGGCCTTCATAGAATCC
TCTCTTCATTGTTGGAGATAGAGGGAACAAGAACCACTAGAGAGATAAAAAGTAAAGATT
CTATTCAGAAACTAGCCAAAGTATTGCTGAAAGCTAATTGGCAAAAGGATTTACACCACA
TCTTGGTAGAGCCAATGGAGAAATCCAAACAAGACAGCAGGGAATCAGTTCGGAGAACAA
TCATGGAGCATGATGAAGTCTTCAGACAGCAGGTGCATGAACTGCATCGACTATATCGTG
TACAAAAATCATTGATGGCTGAACTAGGAGGTGAGAAGCACAGGTTTCAATCAAGGACAG
GAGAAACTCAAGAAATGATGCAAGGGCCCCTGTCAAACCTCAAGAATAGCCCCTCTACAT
CAGAGACAACCCAATCTGCTCATCTTGGTAGCACACAACACTGTGCTCCAGAGCAAGTTC
CTGAGCATTCAATTCTTCAAGAATACAAACCAGCAACATGCCTAAACTTCTTCACTGAAG
AAACCTCAAGAACACAAGAATTTAGACGAGAAGGTGGTAGATCAACTGGAGGTGAAAATT
GGAGTGCTTCTGACCCTTCCGTAGAGAATGATCTTGACCTCAAACTAACAATTGGCCCCA
GTTTGCATGCAACAAAAGCACCACACTGGCTCTTCTCAGGAAGCAGGGAAAGAAATCCTT
CTGGTCAGCATCGATGACAAAAAGCTGGCATTGTAGAACAGTTAGTTGGATGACAAAAAA
GAGAGGAAGCAGAAGCCTCCTAGTCCTAGCAATGGAAGGCAACACTTCCAAGATATATCA
TCAATGCAACCTAGCCTCCAAATTTTGATCAGAGTTAAGCCTCGATCATGAGTGATCTGT
GTGCAAACCATAGAGTGTAGCAGAACTAGGATTTGCTAGGAGCACATTATTGTAATGTCA
TGATGAGCTTTACCAACGATTTGGCTCTTGTTTGTCCTCTCTTCAATTCAGACAGGAAGA
GAACAAACATTACTGAGGAAGTATCAAATTTGAAAAGAGCAAAATAGTTCCTGACTTCAG
TCTTCCTGATGCAGTTGTTATATCAGTCGTCATATCGGTCTTCCATGATTGGTTATTTCT
TATTTACATTTCTTTGTCTGCATATCCATGTACTCAGGTAATTCTTCAAAATGAATATGA
CTTTTTGGCGATCAAATATCCAA

consensusID : consensus_3995#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 530
fasta sequence

                              [GCATGATGAAGTCTTCAGACAGCAGGTGCATGAACTGCATCGACTATATCGTGTACAAAAATCATTGATGGCTGAACTAGGAGGTGAGAAGCACAGGTTTCAATCAAGGACAGGAGAAACTCAAGAAATGATGCAAGGGCCCCTGTCAAACCTCAAGAATAGCCCCTCTACATCAGAGACAACCCAATCTGCTCATCTTGGTAGCACACAACACTGTGCTCCAGAGCAAGTTCCTGAGCATTCAATTCTTCAAGAATACAAACCAGCAACATGCCTAAACTTCTTCACTGAAGAAACCTCAAGAACACAAGAATTTAGACGAGAAGGTGGTAGATCAACTGGAGGTGAAAATTGGAGTGCTTCTGACCCTTCCGTAGAGAATGATCTTGACCTCAAACTAACAATTGGCCCCAGTTTGCATGCAACAAAAGCACCACACTGGCTCTTCTCNNNNNGCANNGAANNNNNTCCTTCTGGTCAGCATCGATGACNAAAAGCTGGCATTGTNNNNNNGNNNNNTGGATGANNNN]

[+] EMBL CF196982             [GCATGATGAAGTCTTCAGACAGCAGGTGCATGAACTGCATCGACTATATCGTGTACAAAAATCATTGATGGCTGAACTAGGAGGTGAGAAGCACAGGTTTCAATCAAGGACAGGAGAAACTCAAGAAATGATGCAAGGGCCCCTGTCAAACCTCAAGAATAGCCCCTCTACATCAGAGACAACCCAATCTGCTCATCTTGGTAGCACACAACACTGTGCTCCAGAGCAAGTTCCTGAGCATTCAATTCTTCAAGAATACAAACCAGCAACATGCCTAAACTTCTTCACTGAAGAAACCTCAAGAACACAAGAATTTAGACGAGAAGGTGGTAGATCAACTGGAGGTGAAAATTGGAGTGCTTCTGACCCTTCCGTAGAGAATGATCTTGACCTCAAACTAACAATTGGCCCCAGTTTGCATGCAACAAAAGCACCACACTGGCTCTTCTCNNNNNGCANNGAANNNNNTCCTTCTGGTCAGCATCGATGACNAAAAGCTGGCATTGTNNNNNNGNNNNNTGGATGANNNN]




>consensus_3995#1
GCATGATGAAGTCTTCAGACAGCAGGTGCATGAACTGCATCGACTATATCGTGTACAAAA
ATCATTGATGGCTGAACTAGGAGGTGAGAAGCACAGGTTTCAATCAAGGACAGGAGAAAC
TCAAGAAATGATGCAAGGGCCCCTGTCAAACCTCAAGAATAGCCCCTCTACATCAGAGAC
AACCCAATCTGCTCATCTTGGTAGCACACAACACTGTGCTCCAGAGCAAGTTCCTGAGCA
TTCAATTCTTCAAGAATACAAACCAGCAACATGCCTAAACTTCTTCACTGAAGAAACCTC
AAGAACACAAGAATTTAGACGAGAAGGTGGTAGATCAACTGGAGGTGAAAATTGGAGTGC
TTCTGACCCTTCCGTAGAGAATGATCTTGACCTCAAACTAACAATTGGCCCCAGTTTGCA
TGCAACAAAAGCACCACACTGGCTCTTCTCNNNNNGCANNGAANNNNNTCCTTCTGGTCA
GCATCGATGACNAAAAGCTGGCATTGTNNNNNNGNNNNNTGGATGANNNN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3995#0      CCTTTTTTCTTTCGTGCCCTAGCATTCTGCTTAGCCACACACAGCCTGTCGACCTTTTCA 60
consensus_3995#1      ------------------------------------------------------------
                                                                                  

consensus_3995#0      GCATTACTAGTTTACTACCTTTTCTTATCTTTCGGTTGGCTCCTGCTGTTTCTAAAAAGG 120
consensus_3995#1      ------------------------------------------------------------
                                                                                  

consensus_3995#0      GATGTTGTTTGCTTCATAAGTATGAGAAAGAGCACCTGGCTGCTACATCCTACTCCAAAC 180
consensus_3995#1      ------------------------------------------------------------
                                                                                  

consensus_3995#0      TGCCTTCCTCAGAAGTCTCTCATAGTTAGGACCTTCACTGCTGACAAGTGAAATGAGTCA 240
consensus_3995#1      ------------------------------------------------------------
                                                                                  

consensus_3995#0      TGGGTGCTGAGGAGAGATTTGTGAAAGCTTCGTCCCATACTGTGCCCTTGCAAATATATG 300
consensus_3995#1      ------------------------------------------------------------
                                                                                  

consensus_3995#0      GAGGTTCCAAGTGTTCATGACCTGTAACCGAAGGGGAGGGAAAATGCAAGGCAAGCAGCT 360
consensus_3995#1      ------------------------------------------------------------
                                                                                  

consensus_3995#0      GGAACATGAGTTGCAAGCTTTCAGGGATGGCTACTGATTTATTTGGCCTTCATAGAATCC 420
consensus_3995#1      ------------------------------------------------------------
                                                                                  

consensus_3995#0      TCTCTTCATTGTTGGAGATAGAGGGAACAAGAACCACTAGAGAGATAAAAAGTAAAGATT 480
consensus_3995#1      ------------------------------------------------------------
                                                                                  

consensus_3995#0      CTATTCAGAAACTAGCCAAAGTATTGCTGAAAGCTAATTGGCAAAAGGATTTACACCACA 540
consensus_3995#1      ------------------------------------------------------------
                                                                                  

consensus_3995#0      TCTTGGTAGAGCCAATGGAGAAATCCAAACAAGACAGCAGGGAATCAGTTCGGAGAACAA 600
consensus_3995#1      ------------------------------------------------------------
                                                                                  

consensus_3995#0      TCATGGAGCATGATGAAGTCTTCAGACAGCAGGTGCATGAACTGCATCGACTATATCGTG 660
consensus_3995#1      -------GCATGATGAAGTCTTCAGACAGCAGGTGCATGAACTGCATCGACTATATCGTG 53
                             *****************************************************

consensus_3995#0      TACAAAAATCATTGATGGCTGAACTAGGAGGTGAGAAGCACAGGTTTCAATCAAGGACAG 720
consensus_3995#1      TACAAAAATCATTGATGGCTGAACTAGGAGGTGAGAAGCACAGGTTTCAATCAAGGACAG 113
                      ************************************************************

consensus_3995#0      GAGAAACTCAAGAAATGATGCAAGGGCCCCTGTCAAACCTCAAGAATAGCCCCTCTACAT 780
consensus_3995#1      GAGAAACTCAAGAAATGATGCAAGGGCCCCTGTCAAACCTCAAGAATAGCCCCTCTACAT 173
                      ************************************************************

consensus_3995#0      CAGAGACAACCCAATCTGCTCATCTTGGTAGCACACAACACTGTGCTCCAGAGCAAGTTC 840
consensus_3995#1      CAGAGACAACCCAATCTGCTCATCTTGGTAGCACACAACACTGTGCTCCAGAGCAAGTTC 233
                      ************************************************************

consensus_3995#0      CTGAGCATTCAATTCTTCAAGAATACAAACCAGCAACATGCCTAAACTTCTTCACTGAAG 900
consensus_3995#1      CTGAGCATTCAATTCTTCAAGAATACAAACCAGCAACATGCCTAAACTTCTTCACTGAAG 293
                      ************************************************************

consensus_3995#0      AAACCTCAAGAACACAAGAATTTAGACGAGAAGGTGGTAGATCAACTGGAGGTGAAAATT 960
consensus_3995#1      AAACCTCAAGAACACAAGAATTTAGACGAGAAGGTGGTAGATCAACTGGAGGTGAAAATT 353
                      ************************************************************

consensus_3995#0      GGAGTGCTTCTGACCCTTCCGTAGAGAATGATCTTGACCTCAAACTAACAATTGGCCCCA 1020
consensus_3995#1      GGAGTGCTTCTGACCCTTCCGTAGAGAATGATCTTGACCTCAAACTAACAATTGGCCCCA 413
                      ************************************************************

consensus_3995#0      GTTTGCATGCAACAAAAGCACCACACTGGCTCTTCTCAGGAAGCAGGGAAAGAAATCCTT 1080
consensus_3995#1      GTTTGCATGCAACAAAAGCACCACACTGGCTCTTCTCNNNNNGCANNGAANNNNNTCCTT 473
                      *************************************     ***  ***     *****

consensus_3995#0      CTGGTCAGCATCGATGACAAAAAGCTGGCATTGTAGAACAGTTAGTTGGATGACAAAAAA 1140
consensus_3995#1      CTGGTCAGCATCGATGACNAAAAGCTGGCATTGTNNNNNNGNNNNNTGGATGANNNN--- 530
                      ****************** ***************      *     *******       

consensus_3995#0      GAGAGGAAGCAGAAGCCTCCTAGTCCTAGCAATGGAAGGCAACACTTCCAAGATATATCA 1200
consensus_3995#1      ------------------------------------------------------------
                                                                                  

consensus_3995#0      TCAATGCAACCTAGCCTCCAAATTTTGATCAGAGTTAAGCCTCGATCATGAGTGATCTGT 1260
consensus_3995#1      ------------------------------------------------------------
                                                                                  

consensus_3995#0      GTGCAAACCATAGAGTGTAGCAGAACTAGGATTTGCTAGGAGCACATTATTGTAATGTCA 1320
consensus_3995#1      ------------------------------------------------------------
                                                                                  

consensus_3995#0      TGATGAGCTTTACCAACGATTTGGCTCTTGTTTGTCCTCTCTTCAATTCAGACAGGAAGA 1380
consensus_3995#1      ------------------------------------------------------------
                                                                                  

consensus_3995#0      GAACAAACATTACTGAGGAAGTATCAAATTTGAAAAGAGCAAAATAGTTCCTGACTTCAG 1440
consensus_3995#1      ------------------------------------------------------------
                                                                                  

consensus_3995#0      TCTTCCTGATGCAGTTGTTATATCAGTCGTCATATCGGTCTTCCATGATTGGTTATTTCT 1500
consensus_3995#1      ------------------------------------------------------------
                                                                                  

consensus_3995#0      TATTTACATTTCTTTGTCTGCATATCCATGTACTCAGGTAATTCTTCAAAATGAATATGA 1560
consensus_3995#1      ------------------------------------------------------------
                                                                                  

consensus_3995#0      CTTTTTGGCGATCAAATATCCAA 1583
consensus_3995#1      -----------------------