Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4004 cluster # 4004       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4004#0 length = 3449 sequences # 2  
 consensus_4004#1 length = 784 sequences # 1  
consensusID : consensus_4004#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 3449
fasta sequence 
                              [GTGTGTACCTATCTCGCTCGTCGCCGTCGTTGGGGTCGCGAGACCGCGGCGGCGGCGGGCGGCGAGGGGCCGCCGGCGCCGAGGCATCCGCGACCGCGAGGCGGGGGATGGCGCGCGGCGACGACGGCGAGCGGCTGCCTGTCGCTGTTGGCGTGCTTCCATGGCAGCAGCAGCAGCAACAACAACCTACGGTTTCTGTTTCTCCCCCAAATTCCAAGAAGTCAAACATAACTTTAGTTGTACATGATGATGTGTTTCGTTCTGGTGGACTACAATATGTTCAACCAAAAAGGAAGGAAATTTGTCTCCACCACAAGTCTTACATGTCGTCAAGAGAGTGGCGAAGAGTCTTAAAAGCATCCCAAGATCATCTGCAAATTCCCCCATGGCTAGCTTGGTTGACCCGGCAAGGTTGCAGAAATTGTTTTCTTTTCCTTCTTTTAATGAATGGGAGAACTTCTGCTCTGGTCGATATTGGTTATCCACATTTCCATTCCTCTCAGAGGATGTATACTATATAATATTGGGTACCTTCTTGTTTCCCATCTTATGGGTTCAACAAAAGAAACTATAATAGCTAGCATGCAGCTGGTTTTGCTATCGATCATAGCATCCACTGTCATGTTGGTGGCATCTGGAGCACCTCCTCCCACTGCTGCTAGTCTTGCTCCCTGCCCCAAAACATGTGGAGAAGTGAACATCTGGTATCCTTATGGTATCGGGCCTGGTTGCTTTCGGCAGGGCTTTGAGCTTACTTGCGACACCACCAGCGAACCTTTGAAGCTCTTCTTGGGAAACACTATGACTCAGGTGATTAGCCTCTATCCTTCAGGAACTGTCCTTGCCTCTATCATGTACACTATCCCCATGATTCATGGAGTTGACACCTACAACTTGTCATGGGACTCTCCTGGGAGGAATCTCAACGTTGTGACCTACAATTACTTGGCGTTCCTCGGTTGTGGGATCGGGGTTTACCTGTTCCATCCAGATACTGGTAACCTTGTGGGTCATTGCACGATCAAGTGTGCCTCCATGGAGGAAATGCACATGGCAACCGAAGGAGGGATTTGCAATGGCATGGGTTGCTGCACTGTCACATTCCCGGTGTTATTTCGAGGTTTTAGAGTGACCATTGTTAAGAGTAACGAGACAATACCGCAGCCCTTCAACAATATCACCATCAAGGCTTTCTTAACCTTCCGTCCTTACATTTTTAGCATTGCGGATCTCCTGTCCAATAAGATAAATGCAAGCACCATTGGTGCTTCCATGGCATACCTCTCGACTGTCATCGCAGATGAACCAAATTGTCCAACAGCTCGGTTGGATAATAAGACACAATTTGCCTGTGGCAGTAACAATTGCATAGATGTGGCAAATGGAGGTTATTCTTGTGCTTGCCCAGGAAATTCTGATGATGGCAATCCCTACCTTCTTGATGATTGCAAACAAGAGTTTAACCCTACCCCGAAAAAGAATTGTTCTAGATCATGTGGTAGCACAAATATTCCTTTCCCGTTTGGGCTTGAGCCAGGCTGTTTTGCTAAGAGGAGATTTCAACTGAGTTGTGCATCAAATCGCACTCTTATTGGAAGACCACCTGCAAAATATGAAGTGACAAATATATCATTAGATGAAGGACTCCTTTATGTTAACAAGCTTTCAGAATTTGAAGATGCCAACACAAAGTATTTATCAGTATACTATGGTGGTTCTGGATGTTTTGGCCAACAATTAATTTATGGTTTGGAAAAGTCTGATTTATCTGAAGAGTATGGTGTTTGGAAGTGGTCTGTGACCAATTTGACGTGTGAAGATGCAAAAAGCAAAAGTGCATATGCATGTGTTAGCACAAACAGCGAGTGTCTTGATGTTACACATGGGAAGCTATATATTGGTTATCGTTGCAAGTGCTCTCTTGGATTTGAAGGAAATCCTTATGTCCAAAATGGATGTACAGATATTGATGAATGCTCTATACCAAACTATTGTAATGGGACATGTTATAACTTTAAAGGAAGCTATAGTTGTTGTCCTCATGGTATGTCTTATGATCGAGTAAGAAGGCAGTGCACTTCCAATAAGAGGCAAAATATTGTTTTGGGACTTGCCATTGGGATTAGCAGTGGTTTTGGAGTTCTAGCTCTTACATTAATTGCAGCTATATTATTCAAAAGGTGGAAGAGAAGCACTCGGAAGAAAATTCGAAGGGCATACTTCCGAAAAAACAAAGGCCTTCTCTTGGAGCAGCTGATCTCATCCAGTAACAATGTTACTCCTAACACAAGAATATTTTCTTTGGAAGATTTAGAGAAAGCAACCAACAACTTTGACCCAACACGTATCCTTGGATATGGAGGCCATGGTACTGTTTACAAGGGGATTTTATCCGATCAACGAGTGGTTGCCATAAAGAGGTCCAAAATTGTGGAGCAGAGTGAGATTGACCAATTTGTTAATGAGGTTGCCATCCTTTCCCAGATTATTCATCGTAATGTGGTGAAACTTTTTGGTTGTTGCCTTGAATCTGAGGTGCCTCTTCTAGTGTATGAATTCATTTCTAATGGCACACTTCATGGTCTTCTTCATGGTGATCTGAGCACCAATTGTTTGTTGACATGGGATGATCGAATGAGGATTGCTCTAGAGGCTGCAGGGGCACTTGCTTATCTCCATTCCTCTGCTGCAATGCCAATCTTCCATAGAGATGTGAAATCAACTAATATACTCTTGGATGGTACCTTCACTACTAAGGTTTCAGATTTCGGTGCTTCTAGGTCCATTTCCATTGATCAAACTCGCGTAGTTACAATAGTACAGGGGACATTTGGGTACTTAGATCCAGAATATTTCTATACAAGCCAATTAACCGAGAAGAGTGATGTTTATAGTTTCGGTGTGATACTTGTTGAACTCCTAACAAGGAAGAAGCCAATTTTTCTCAACTGTCTTGGTGAACAGAAAAATTTGTGCCACTGTTTTCTTCAAAGCCTAAGAGATAAAACAACAATGGATATACTGGATTCTCAAGTTGTAGAGGAAGCTAGCCATAGAGAGATTGATGAAATGGCCTCAGTTGCAGAGATGTGCTTAAAGACTAAAGGAGCAAAGAGACCTAAAATGAAAGAAGTGGAGATAAGACTGCAACTCCTAAGAGCTGCAAGATCAAGGGCATACAAGGAAGACTTACAAAGGAGCAGCGAAATAAAGCCGTTATTAACTCCGAAGTACAAATGTACTTCCCTGAACAGCACCAAGAATGTTGAAATGGGCCTTGTTGCTAATCCAGAATCTCAGGTTGTCTCTAGGTGCTATACCATGGAGAGAGAGATGATGTACTCTTCACAGTTTCCTCGCTGATTGTATTTGTTTCGACCCTTGTAATGATTTATTTATTTTTCGCTTATTTTTGTAGACTGTACAAAATGAATGGCACAGACCAATCG]

[+] EMBL AK120279             [GTGTGTACCTATCTCGCTCGTCGCCGTCGTTGGGGTCGCGAGACCGCGGCGGCGGCGGGCGGCGAGGGGCCGCCGGCGCCGAGGCATCCGCGACCGCGAGGCGGGGGATGGCGCGCGGCGACGACGGCGAGCGGCTGCCTGTCGCTGTTGGCGTGCTTCCATGGCAGCAGCAGCAGCAACAACAACCTACGGTTTCTGTTTCTCCCCCAAATTCCAAGAAGTCAAACATAACTTTAGTTGTACATGATGATGTGTTTCGTTCTGGTGGACTACAATATGTTCAACCAAAAAGGAAGGAAATTTGTCTCCACCACAAGTCTTACATGTCGTCAAGAGAGTGGCGAAGAGTCTTAAAAGCATCCCAAGATCATCTGCAAATTCCCCCATGGCTAGCTTGGTTGACCCGGCAAGGTTGCAGAAATTGTTTTCTTTTCCTTCTTTTAATGAATGGGAGAACTTCTGCTCTGGTCGATATTGGTTATCCACATTTCCATTCCTCTCAGAGGATGTATACTATATAATATTGGGTACCTTCTTGTTTCCCATCTTATGGGTTCAACAAAAGAAACTATAATAGCTAGCATGCAGCTGGTTTTGCTATCGATCATAGCATCCACTGTCATGTTGGTGGCATCTGGAGCACCTCCTCCCACTGCTGCTAGTCTTGCTCCCTGCCCCAAAACATGTGGAGAAGTGAACATCTGGTATCCTTATGGTATCGGGCCTGGTTGCTTTCGGCAGGGCTTTGAGCTTACTTGCGACACCACCAGCGAACCTTTGAAGCTCTTCTTGGGAAACACTATGACTCAGGTGATTAGCCTCTATCCTTCAGGAACTGTCCTTGCCTCTATCATGTACACTATCCCCATGATTCATGGAGTTGACACCTACAACTTGTCATGGGACTCTCCTGGGAGGAATCTCAACGTTGTGACCTACAATTACTTGGCGTTCCTCGGTTGTGGGATCGGGGTTTACCTGTTCCATCCAGATACTGGTAACCTTGTGGGTCATTGCACGATCAAGTGTGCCTCCATGGAGGAAATGCACATGGCAACCGAAGGAGGGATTTGCAATGGCATGGGTTGCTGCACTGTCACATTCCCGGTGTTATTTCGAGGTTTTAGAGTGACCATTGTTAAGAGTAACGAGACAATACCGCAGCCCTTCAACAATATCACCATCAAGGCTTTCTTAACCTTCCGTCCTTACATTTTTAGCATTGCGGATCTCCTGTCCAATAAGATAAATGCAAGCACCATTGGTGCTTCCATGGCATACCTCTCGACTGTCATCGCAGATGAACCAAATTGTCCAACAGCTCGGTTGGATAATAAGACACAATTTGCCTGTGGCAGTAACAATTGCATAGATGTGGCAAATGGAGGTTATTCTTGTGCTTGCCCAGGAAATTCTGATGATGGCAATCCCTACCTTCTTGATGATTGCAAACAAGAGTTTAACCCTACCCCGAAAAAGAATTGTTCTAGATCATGTGGTAGCACAAATATTCCTTTCCCGTTTGGGCTTGAGCCAGGCTGTTTTGCTAAGAGGAGATTTCAACTGAGTTGTGCATCAAATCGCACTCTTATTGGAAGACCACCTGCAAAATATGAAGTGACAAATATATCATTAGATGAAGGACTCCTTTATGTTAACAAGCTTTCAGAATTTGAAGATGCCAACACAAAGTATTTATCAGTATACTATGGTGGTTCTGGATGTTTTGGCCAACAATTAATTTATGGTTTGGAAAAGTCTGATTTATCTGAAGAGTATGGTGTTTGGAAGTGGTCTGTGACCAATTTGACGTGTGAAGATGCAAAAAGCAAAAGTGCATATGCATGTGTTAGCACAAACAGCGAGTGTCTTGATGTTACACATGGGAAGCTATATATTGGTTATCGTTGCAAGTGCTCTCTTGGATTTGAAGGAAATCCTTATGTCCAAAATGGATGTACAGATATTGATGAATGCTCTATACCAAACTATTGTAATGGGACATGTTATAACTTTAAAGGAAGCTATAGTTGTTGTCCTCATGGTATGTCTTATGATCGAGTAAGAAGGCAGTGCACTTCCAATAAGAGGCAAAATATTGTTTTGGGACTTGCCATTGGGATTAGCAGTGGTTTTGGAGTTCTAGCTCTTACATTAATTGCAGCTATATTATTCAAAAGGTGGAAGAGAAGCACTCGGAAGAAAATTCGAAGGGCATACTTCCGAAAAAACAAAGGCCTTCTCTTGGAGCAGCTGATCTCATCCAGTAACAATGTTACTCCTAACACAAGAATATTTTCTTTGGAAGATTTAGAGAAAGCAACCAACAACTTTGACCCAACACGTATCCTTGGATATGGAGGCCATGGTACTGTTTACAAGGGGATTTTATCCGATCAACGAGTGGTTGCCATAAAGAGGTCCAAAATTGTGGAGCAGAGTGAGATTGACCAATTTGTTAATGAGGTTGCCATCCTTTCCCAGATTATTCATCGTAATGTGGTGAAACTTTTTGGTTGTTGCCTTGAATCTGAGGTGCCTCTTCTAGTGTATGAATTCATTTCTAATGGCACACTTCATGGTCTTCTTCATGGTGATCTGAGCACCAATTGTTTGTTGACATGGGATGATCGAATGAGGATTGCTCTAGAGGCTGCAGGGGCACTTGCTTATCTCCATTCCTCTGCTGCAATGCCAATCTTCCATAGAGATGTGAAATCAACTAATATACTCTTGGATGGTACCTTCACTACTAAGGTTTCAGATTTCGGTGCTTCTAGGTCCATTTCCATTGATCAAACTCGCGTAGTTACAATAGTACAGGGGACATTTGGGTACTTAGATCCAGAATATTTCTATACAAGCCAATTAACCGAGAAGAGTGATGTTTATAGTTTCGGTGTGATACTTGTTGAACTCCTAACAAGGAAGAAGCCAATTTTTCTCAACTGTCTTGGTGAACAGAAAAATTTGTGCCACTGTTTTCTTCAAAGCCTAAGAGATAAAACAACAATGGATATACTGGATTCTCAAGTTGTAGAGGAAGCTAGCCATAGAGAGATTGATGAAATGGCCTCAGTTGCAGAGATGTGCTTAAAGACTAAAGGAGCAAAGAGACCTAAAATGAAAGAAGTGGAGATAAGACTGCAACTCCTAAGAGCTGCAAGATCAAGGGCATACAAGGAAGACTTACAAAGGAGCAGCGAAATAAAGCCGTTATTAACTCCGAAGTACAAATGTACTTCCCTGAACAGCACCAAGAATGTTGAAATGGGCCTTGTTGCTAATCCAGAATCTCAGGTTGTCTCTAGGTGCTATACCATGGAGAGAGAGATGATGTACTCTTCACAGTTTCCTCGCTGATTGTATTTGTTTCGACCCTTGTAATGATTTATTTATTTTTCGCTTATTTTTGTAGACTGTACAAAATGAATGGCACAGACCAATCG]
[+] EMBL CB631820             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GCAAATGGAGGTTATTCTTGTGCTTGCCCAGGAAATTCTGATGATGGCAATCCCTACCTTCTTGATGATTGCAAACAAGAGTTTAACCCTACCCCGAAAAAGAATTGTTCTAGATCATGTGGTAGCACAAATATTCCTTTCCCGTTTGGGCTTGAGCCAGGCTGTTTTGCTAAGAGGAGATTTCAACTGAGTTGTGCATCAAATCGCACTCTTATTGGAAGACCACCTGCAAAATATGAAGTGACAAATATATCATTAGATGAAGGACTCCTTTATGTTAACAAGCTTTCAGAATTTGAAGATGCCAACACAAAGTATTTATCAGTATACTATGGTGGTTCTGGATATTTTGGCCAACAATTAATTTATGGTTTGGAAAAGTCTGATTTATCTGAAGAGTATGGTGTTTGGAAGTGGTCTGTGACCAATTTGACGTGTGAAGATGCAAAAAGCAAAAGTGCATATGCATGTGTTAGCACAAACAGTGAGTGTCTTGATGTTACACATGGGAAGCTATATATTGGTTATCGTTGCAAGTGCTCTCTTGGATTTGAAGGAAATCCTTATGTCCAAAATGGATGTACAGATATTGATGAATGCTCTATACCAAACTATTGTAATGGGACATGTTATAACTTTAAAGGAAGCTATATTTGTTGTCCTCATGGTATGTCTTATGATCGAGTAAGAAGGCAGTGCACTTCCAATAAGAGGCAAAATATTGTTTTAGGACTTACCATTGGGATTAGCAGTGGTTTTGGAGTTCTAGCTCTTACATTAATTGCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]




>consensus_4004#0
GTGTGTACCTATCTCGCTCGTCGCCGTCGTTGGGGTCGCGAGACCGCGGCGGCGGCGGGC
GGCGAGGGGCCGCCGGCGCCGAGGCATCCGCGACCGCGAGGCGGGGGATGGCGCGCGGCG
ACGACGGCGAGCGGCTGCCTGTCGCTGTTGGCGTGCTTCCATGGCAGCAGCAGCAGCAAC
AACAACCTACGGTTTCTGTTTCTCCCCCAAATTCCAAGAAGTCAAACATAACTTTAGTTG
TACATGATGATGTGTTTCGTTCTGGTGGACTACAATATGTTCAACCAAAAAGGAAGGAAA
TTTGTCTCCACCACAAGTCTTACATGTCGTCAAGAGAGTGGCGAAGAGTCTTAAAAGCAT
CCCAAGATCATCTGCAAATTCCCCCATGGCTAGCTTGGTTGACCCGGCAAGGTTGCAGAA
ATTGTTTTCTTTTCCTTCTTTTAATGAATGGGAGAACTTCTGCTCTGGTCGATATTGGTT
ATCCACATTTCCATTCCTCTCAGAGGATGTATACTATATAATATTGGGTACCTTCTTGTT
TCCCATCTTATGGGTTCAACAAAAGAAACTATAATAGCTAGCATGCAGCTGGTTTTGCTA
TCGATCATAGCATCCACTGTCATGTTGGTGGCATCTGGAGCACCTCCTCCCACTGCTGCT
AGTCTTGCTCCCTGCCCCAAAACATGTGGAGAAGTGAACATCTGGTATCCTTATGGTATC
GGGCCTGGTTGCTTTCGGCAGGGCTTTGAGCTTACTTGCGACACCACCAGCGAACCTTTG
AAGCTCTTCTTGGGAAACACTATGACTCAGGTGATTAGCCTCTATCCTTCAGGAACTGTC
CTTGCCTCTATCATGTACACTATCCCCATGATTCATGGAGTTGACACCTACAACTTGTCA
TGGGACTCTCCTGGGAGGAATCTCAACGTTGTGACCTACAATTACTTGGCGTTCCTCGGT
TGTGGGATCGGGGTTTACCTGTTCCATCCAGATACTGGTAACCTTGTGGGTCATTGCACG
ATCAAGTGTGCCTCCATGGAGGAAATGCACATGGCAACCGAAGGAGGGATTTGCAATGGC
ATGGGTTGCTGCACTGTCACATTCCCGGTGTTATTTCGAGGTTTTAGAGTGACCATTGTT
AAGAGTAACGAGACAATACCGCAGCCCTTCAACAATATCACCATCAAGGCTTTCTTAACC
TTCCGTCCTTACATTTTTAGCATTGCGGATCTCCTGTCCAATAAGATAAATGCAAGCACC
ATTGGTGCTTCCATGGCATACCTCTCGACTGTCATCGCAGATGAACCAAATTGTCCAACA
GCTCGGTTGGATAATAAGACACAATTTGCCTGTGGCAGTAACAATTGCATAGATGTGGCA
AATGGAGGTTATTCTTGTGCTTGCCCAGGAAATTCTGATGATGGCAATCCCTACCTTCTT
GATGATTGCAAACAAGAGTTTAACCCTACCCCGAAAAAGAATTGTTCTAGATCATGTGGT
AGCACAAATATTCCTTTCCCGTTTGGGCTTGAGCCAGGCTGTTTTGCTAAGAGGAGATTT
CAACTGAGTTGTGCATCAAATCGCACTCTTATTGGAAGACCACCTGCAAAATATGAAGTG
ACAAATATATCATTAGATGAAGGACTCCTTTATGTTAACAAGCTTTCAGAATTTGAAGAT
GCCAACACAAAGTATTTATCAGTATACTATGGTGGTTCTGGATGTTTTGGCCAACAATTA
ATTTATGGTTTGGAAAAGTCTGATTTATCTGAAGAGTATGGTGTTTGGAAGTGGTCTGTG
ACCAATTTGACGTGTGAAGATGCAAAAAGCAAAAGTGCATATGCATGTGTTAGCACAAAC
AGCGAGTGTCTTGATGTTACACATGGGAAGCTATATATTGGTTATCGTTGCAAGTGCTCT
CTTGGATTTGAAGGAAATCCTTATGTCCAAAATGGATGTACAGATATTGATGAATGCTCT
ATACCAAACTATTGTAATGGGACATGTTATAACTTTAAAGGAAGCTATAGTTGTTGTCCT
CATGGTATGTCTTATGATCGAGTAAGAAGGCAGTGCACTTCCAATAAGAGGCAAAATATT
GTTTTGGGACTTGCCATTGGGATTAGCAGTGGTTTTGGAGTTCTAGCTCTTACATTAATT
GCAGCTATATTATTCAAAAGGTGGAAGAGAAGCACTCGGAAGAAAATTCGAAGGGCATAC
TTCCGAAAAAACAAAGGCCTTCTCTTGGAGCAGCTGATCTCATCCAGTAACAATGTTACT
CCTAACACAAGAATATTTTCTTTGGAAGATTTAGAGAAAGCAACCAACAACTTTGACCCA
ACACGTATCCTTGGATATGGAGGCCATGGTACTGTTTACAAGGGGATTTTATCCGATCAA
CGAGTGGTTGCCATAAAGAGGTCCAAAATTGTGGAGCAGAGTGAGATTGACCAATTTGTT
AATGAGGTTGCCATCCTTTCCCAGATTATTCATCGTAATGTGGTGAAACTTTTTGGTTGT
TGCCTTGAATCTGAGGTGCCTCTTCTAGTGTATGAATTCATTTCTAATGGCACACTTCAT
GGTCTTCTTCATGGTGATCTGAGCACCAATTGTTTGTTGACATGGGATGATCGAATGAGG
ATTGCTCTAGAGGCTGCAGGGGCACTTGCTTATCTCCATTCCTCTGCTGCAATGCCAATC
TTCCATAGAGATGTGAAATCAACTAATATACTCTTGGATGGTACCTTCACTACTAAGGTT
TCAGATTTCGGTGCTTCTAGGTCCATTTCCATTGATCAAACTCGCGTAGTTACAATAGTA
CAGGGGACATTTGGGTACTTAGATCCAGAATATTTCTATACAAGCCAATTAACCGAGAAG
AGTGATGTTTATAGTTTCGGTGTGATACTTGTTGAACTCCTAACAAGGAAGAAGCCAATT
TTTCTCAACTGTCTTGGTGAACAGAAAAATTTGTGCCACTGTTTTCTTCAAAGCCTAAGA
GATAAAACAACAATGGATATACTGGATTCTCAAGTTGTAGAGGAAGCTAGCCATAGAGAG
ATTGATGAAATGGCCTCAGTTGCAGAGATGTGCTTAAAGACTAAAGGAGCAAAGAGACCT
AAAATGAAAGAAGTGGAGATAAGACTGCAACTCCTAAGAGCTGCAAGATCAAGGGCATAC
AAGGAAGACTTACAAAGGAGCAGCGAAATAAAGCCGTTATTAACTCCGAAGTACAAATGT
ACTTCCCTGAACAGCACCAAGAATGTTGAAATGGGCCTTGTTGCTAATCCAGAATCTCAG
GTTGTCTCTAGGTGCTATACCATGGAGAGAGAGATGATGTACTCTTCACAGTTTCCTCGC
TGATTGTATTTGTTTCGACCCTTGTAATGATTTATTTATTTTTCGCTTATTTTTGTAGAC
TGTACAAAATGAATGGCACAGACCAATCG

consensusID : consensus_4004#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 784
fasta sequence 
                              [CAATATTCCATAGAGATGTGAAATCAACTAATATACTCTTGGATGGTACCTTCACTGCTAAGGTTTCAGATTTCGGTGCTTCTAGGTCCATTTCCATTGATCAAACTCGCGTAGTTACAATAGTACAGGGGACATTTGGGTACTTAGATCCAGAATATTTCTATACAAGCCAATTAACCGAGAAGAGTGATGTTTATAGTTTCGGTGTGATACTTGTCGAACTCCTAACAAGGAAGAAGCCAATTTTTCTCAACTGTCTTGGTGAACAGAAAAATTTGTGCCACTGTTTTCTTCAAAGCCTAAGAGATAAAACAACAATGGATATACTGGATTCTCAAGTTGTAGAGGAAGCTAGCCAAACAGAGATTGATGGAATTGCCTCAGTTGCAGAGATGTGCTTAAAGACTAAAGGAGCAAAGAGACCTAAAATGAAAGAAGTGGAGTTAAGACTGCAACTCCTAAGAGCTGCAAGATCGAGGGCATACAAGGAACAAGAATGTACTCCGAAGTACAAATGTACTTCCCTGAACAGCAACAAGAATGTTGAAATGGGCCTTGTTGCTAATCCAGAATATCAGGTTGTCTCTAGGTGCTATACCATGGAGAGAGAGATGATGTACTCTTCACAGTTTCCTCGCTGATTGTATTTGTTTCGACCCTTGTAATGATTTATTTATTTTTCGCTTATTTTTGTAGACTGTACAAAATGAATGGCACAGACCAATCGATTTCTCTGTATGCAGCAGCTCTATCTATTTTTGTGGAGTGGTTAGTTGCAACAGCT]

[-] EMBL CB631821             [CAATATTCCATAGAGATGTGAAATCAACTAATATACTCTTGGATGGTACCTTCACTGCTAAGGTTTCAGATTTCGGTGCTTCTAGGTCCATTTCCATTGATCAAACTCGCGTAGTTACAATAGTACAGGGGACATTTGGGTACTTAGATCCAGAATATTTCTATACAAGCCAATTAACCGAGAAGAGTGATGTTTATAGTTTCGGTGTGATACTTGTCGAACTCCTAACAAGGAAGAAGCCAATTTTTCTCAACTGTCTTGGTGAACAGAAAAATTTGTGCCACTGTTTTCTTCAAAGCCTAAGAGATAAAACAACAATGGATATACTGGATTCTCAAGTTGTAGAGGAAGCTAGCCAAACAGAGATTGATGGAATTGCCTCAGTTGCAGAGATGTGCTTAAAGACTAAAGGAGCAAAGAGACCTAAAATGAAAGAAGTGGAGTTAAGACTGCAACTCCTAAGAGCTGCAAGATCGAGGGCATACAAGGAACAAGAATGTACTCCGAAGTACAAATGTACTTCCCTGAACAGCAACAAGAATGTTGAAATGGGCCTTGTTGCTAATCCAGAATATCAGGTTGTCTCTAGGTGCTATACCATGGAGAGAGAGATGATGTACTCTTCACAGTTTCCTCGCTGATTGTATTTGTTTCGACCCTTGTAATGATTTATTTATTTTTCGCTTATTTTTGTAGACTGTACAAAATGAATGGCACAGACCAATCGATTTCTCTGTATGCAGCAGCTCTATCTATTTTTGTGGAGTGGTTAGTTGCAACAGCT]




>consensus_4004#1
CAATATTCCATAGAGATGTGAAATCAACTAATATACTCTTGGATGGTACCTTCACTGCTA
AGGTTTCAGATTTCGGTGCTTCTAGGTCCATTTCCATTGATCAAACTCGCGTAGTTACAA
TAGTACAGGGGACATTTGGGTACTTAGATCCAGAATATTTCTATACAAGCCAATTAACCG
AGAAGAGTGATGTTTATAGTTTCGGTGTGATACTTGTCGAACTCCTAACAAGGAAGAAGC
CAATTTTTCTCAACTGTCTTGGTGAACAGAAAAATTTGTGCCACTGTTTTCTTCAAAGCC
TAAGAGATAAAACAACAATGGATATACTGGATTCTCAAGTTGTAGAGGAAGCTAGCCAAA
CAGAGATTGATGGAATTGCCTCAGTTGCAGAGATGTGCTTAAAGACTAAAGGAGCAAAGA
GACCTAAAATGAAAGAAGTGGAGTTAAGACTGCAACTCCTAAGAGCTGCAAGATCGAGGG
CATACAAGGAACAAGAATGTACTCCGAAGTACAAATGTACTTCCCTGAACAGCAACAAGA
ATGTTGAAATGGGCCTTGTTGCTAATCCAGAATATCAGGTTGTCTCTAGGTGCTATACCA
TGGAGAGAGAGATGATGTACTCTTCACAGTTTCCTCGCTGATTGTATTTGTTTCGACCCT
TGTAATGATTTATTTATTTTTCGCTTATTTTTGTAGACTGTACAAAATGAATGGCACAGA
CCAATCGATTTCTCTGTATGCAGCAGCTCTATCTATTTTTGTGGAGTGGTTAGTTGCAAC
AGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4004#0      GTGTGTACCTATCTCGCTCGTCGCCGTCGTTGGGGTCGCGAGACCGCGGCGGCGGCGGGC 60
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      GGCGAGGGGCCGCCGGCGCCGAGGCATCCGCGACCGCGAGGCGGGGGATGGCGCGCGGCG 120
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      ACGACGGCGAGCGGCTGCCTGTCGCTGTTGGCGTGCTTCCATGGCAGCAGCAGCAGCAAC 180
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      AACAACCTACGGTTTCTGTTTCTCCCCCAAATTCCAAGAAGTCAAACATAACTTTAGTTG 240
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      TACATGATGATGTGTTTCGTTCTGGTGGACTACAATATGTTCAACCAAAAAGGAAGGAAA 300
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      TTTGTCTCCACCACAAGTCTTACATGTCGTCAAGAGAGTGGCGAAGAGTCTTAAAAGCAT 360
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      CCCAAGATCATCTGCAAATTCCCCCATGGCTAGCTTGGTTGACCCGGCAAGGTTGCAGAA 420
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      ATTGTTTTCTTTTCCTTCTTTTAATGAATGGGAGAACTTCTGCTCTGGTCGATATTGGTT 480
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      ATCCACATTTCCATTCCTCTCAGAGGATGTATACTATATAATATTGGGTACCTTCTTGTT 540
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      TCCCATCTTATGGGTTCAACAAAAGAAACTATAATAGCTAGCATGCAGCTGGTTTTGCTA 600
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      TCGATCATAGCATCCACTGTCATGTTGGTGGCATCTGGAGCACCTCCTCCCACTGCTGCT 660
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      AGTCTTGCTCCCTGCCCCAAAACATGTGGAGAAGTGAACATCTGGTATCCTTATGGTATC 720
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      GGGCCTGGTTGCTTTCGGCAGGGCTTTGAGCTTACTTGCGACACCACCAGCGAACCTTTG 780
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      AAGCTCTTCTTGGGAAACACTATGACTCAGGTGATTAGCCTCTATCCTTCAGGAACTGTC 840
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      CTTGCCTCTATCATGTACACTATCCCCATGATTCATGGAGTTGACACCTACAACTTGTCA 900
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      TGGGACTCTCCTGGGAGGAATCTCAACGTTGTGACCTACAATTACTTGGCGTTCCTCGGT 960
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      TGTGGGATCGGGGTTTACCTGTTCCATCCAGATACTGGTAACCTTGTGGGTCATTGCACG 1020
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      ATCAAGTGTGCCTCCATGGAGGAAATGCACATGGCAACCGAAGGAGGGATTTGCAATGGC 1080
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      ATGGGTTGCTGCACTGTCACATTCCCGGTGTTATTTCGAGGTTTTAGAGTGACCATTGTT 1140
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      AAGAGTAACGAGACAATACCGCAGCCCTTCAACAATATCACCATCAAGGCTTTCTTAACC 1200
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      TTCCGTCCTTACATTTTTAGCATTGCGGATCTCCTGTCCAATAAGATAAATGCAAGCACC 1260
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      ATTGGTGCTTCCATGGCATACCTCTCGACTGTCATCGCAGATGAACCAAATTGTCCAACA 1320
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      GCTCGGTTGGATAATAAGACACAATTTGCCTGTGGCAGTAACAATTGCATAGATGTGGCA 1380
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      AATGGAGGTTATTCTTGTGCTTGCCCAGGAAATTCTGATGATGGCAATCCCTACCTTCTT 1440
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      GATGATTGCAAACAAGAGTTTAACCCTACCCCGAAAAAGAATTGTTCTAGATCATGTGGT 1500
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      AGCACAAATATTCCTTTCCCGTTTGGGCTTGAGCCAGGCTGTTTTGCTAAGAGGAGATTT 1560
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      CAACTGAGTTGTGCATCAAATCGCACTCTTATTGGAAGACCACCTGCAAAATATGAAGTG 1620
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      ACAAATATATCATTAGATGAAGGACTCCTTTATGTTAACAAGCTTTCAGAATTTGAAGAT 1680
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      GCCAACACAAAGTATTTATCAGTATACTATGGTGGTTCTGGATGTTTTGGCCAACAATTA 1740
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      ATTTATGGTTTGGAAAAGTCTGATTTATCTGAAGAGTATGGTGTTTGGAAGTGGTCTGTG 1800
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      ACCAATTTGACGTGTGAAGATGCAAAAAGCAAAAGTGCATATGCATGTGTTAGCACAAAC 1860
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      AGCGAGTGTCTTGATGTTACACATGGGAAGCTATATATTGGTTATCGTTGCAAGTGCTCT 1920
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      CTTGGATTTGAAGGAAATCCTTATGTCCAAAATGGATGTACAGATATTGATGAATGCTCT 1980
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      ATACCAAACTATTGTAATGGGACATGTTATAACTTTAAAGGAAGCTATAGTTGTTGTCCT 2040
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      CATGGTATGTCTTATGATCGAGTAAGAAGGCAGTGCACTTCCAATAAGAGGCAAAATATT 2100
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      GTTTTGGGACTTGCCATTGGGATTAGCAGTGGTTTTGGAGTTCTAGCTCTTACATTAATT 2160
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      GCAGCTATATTATTCAAAAGGTGGAAGAGAAGCACTCGGAAGAAAATTCGAAGGGCATAC 2220
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      TTCCGAAAAAACAAAGGCCTTCTCTTGGAGCAGCTGATCTCATCCAGTAACAATGTTACT 2280
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      CCTAACACAAGAATATTTTCTTTGGAAGATTTAGAGAAAGCAACCAACAACTTTGACCCA 2340
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      ACACGTATCCTTGGATATGGAGGCCATGGTACTGTTTACAAGGGGATTTTATCCGATCAA 2400
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      CGAGTGGTTGCCATAAAGAGGTCCAAAATTGTGGAGCAGAGTGAGATTGACCAATTTGTT 2460
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      AATGAGGTTGCCATCCTTTCCCAGATTATTCATCGTAATGTGGTGAAACTTTTTGGTTGT 2520
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      TGCCTTGAATCTGAGGTGCCTCTTCTAGTGTATGAATTCATTTCTAATGGCACACTTCAT 2580
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      GGTCTTCTTCATGGTGATCTGAGCACCAATTGTTTGTTGACATGGGATGATCGAATGAGG 2640
consensus_4004#1      ------------------------------------------------------------
                                                                                  

consensus_4004#0      ATTGCTCTAGAGGCTGCAGGGGCACTTGCTTATCTCCATTCCTCTGCTGCAATGCCAATC 2700
consensus_4004#1      -------------------------------------------------------CAATA 5
                                                                             **** 

consensus_4004#0      TTCCATAGAGATGTGAAATCAACTAATATACTCTTGGATGGTACCTTCACTACTAAGGTT 2760
consensus_4004#1      TTCCATAGAGATGTGAAATCAACTAATATACTCTTGGATGGTACCTTCACTGCTAAGGTT 65
                      *************************************************** ********

consensus_4004#0      TCAGATTTCGGTGCTTCTAGGTCCATTTCCATTGATCAAACTCGCGTAGTTACAATAGTA 2820
consensus_4004#1      TCAGATTTCGGTGCTTCTAGGTCCATTTCCATTGATCAAACTCGCGTAGTTACAATAGTA 125
                      ************************************************************

consensus_4004#0      CAGGGGACATTTGGGTACTTAGATCCAGAATATTTCTATACAAGCCAATTAACCGAGAAG 2880
consensus_4004#1      CAGGGGACATTTGGGTACTTAGATCCAGAATATTTCTATACAAGCCAATTAACCGAGAAG 185
                      ************************************************************

consensus_4004#0      AGTGATGTTTATAGTTTCGGTGTGATACTTGTTGAACTCCTAACAAGGAAGAAGCCAATT 2940
consensus_4004#1      AGTGATGTTTATAGTTTCGGTGTGATACTTGTCGAACTCCTAACAAGGAAGAAGCCAATT 245
                      ******************************** ***************************

consensus_4004#0      TTTCTCAACTGTCTTGGTGAACAGAAAAATTTGTGCCACTGTTTTCTTCAAAGCCTAAGA 3000
consensus_4004#1      TTTCTCAACTGTCTTGGTGAACAGAAAAATTTGTGCCACTGTTTTCTTCAAAGCCTAAGA 305
                      ************************************************************

consensus_4004#0      GATAAAACAACAATGGATATACTGGATTCTCAAGTTGTAGAGGAAGCTAGCCATAGAGAG 3060
consensus_4004#1      GATAAAACAACAATGGATATACTGGATTCTCAAGTTGTAGAGGAAGCTAGCCAAACAGAG 365
                      ***************************************************** * ****

consensus_4004#0      ATTGATGAAATGGCCTCAGTTGCAGAGATGTGCTTAAAGACTAAAGGAGCAAAGAGACCT 3120
consensus_4004#1      ATTGATGGAATTGCCTCAGTTGCAGAGATGTGCTTAAAGACTAAAGGAGCAAAGAGACCT 425
                      ******* *** ************************************************

consensus_4004#0      AAAATGAAAGAAGTGGAGATAAGACTGCAACTCCTAAGAGCTGCAAGATCAAGGGCATAC 3180
consensus_4004#1      AAAATGAAAGAAGTGGAGTTAAGACTGCAACTCCTAAGAGCTGCAAGATCGAGGGCATAC 485
                      ****************** ******************************* *********

consensus_4004#0      AAGGAAGACTTACAAAGGAGCAGCGAAATAAAGCCGTTATTAACTCCGAAGTACAAATGT 3240
consensus_4004#1      AAGG----------------------AACAAGAATGT-----ACTCCGAAGTACAAATGT 518
                      ****                      ** **    **     ******************

consensus_4004#0      ACTTCCCTGAACAGCACCAAGAATGTTGAAATGGGCCTTGTTGCTAATCCAGAATCTCAG 3300
consensus_4004#1      ACTTCCCTGAACAGCAACAAGAATGTTGAAATGGGCCTTGTTGCTAATCCAGAATATCAG 578
                      **************** ************************************** ****

consensus_4004#0      GTTGTCTCTAGGTGCTATACCATGGAGAGAGAGATGATGTACTCTTCACAGTTTCCTCGC 3360
consensus_4004#1      GTTGTCTCTAGGTGCTATACCATGGAGAGAGAGATGATGTACTCTTCACAGTTTCCTCGC 638
                      ************************************************************

consensus_4004#0      TGATTGTATTTGTTTCGACCCTTGTAATGATTTATTTATTTTTCGCTTATTTTTGTAGAC 3420
consensus_4004#1      TGATTGTATTTGTTTCGACCCTTGTAATGATTTATTTATTTTTCGCTTATTTTTGTAGAC 698
                      ************************************************************

consensus_4004#0      TGTACAAAATGAATGGCACAGACCAATCG------------------------------- 3449
consensus_4004#1      TGTACAAAATGAATGGCACAGACCAATCGATTTCTCTGTATGCAGCAGCTCTATCTATTT 758
                      *****************************                               

consensus_4004#0      --------------------------
consensus_4004#1      TTGTGGAGTGGTTAGTTGCAACAGCT 784


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)