Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4005 cluster # 4005       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4005#0 length = 2675 sequences # 2  
consensus_4005#1 length = 1389 sequences # 1  

consensusID : consensus_4005#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2675
fasta sequence
                              [CTCCCATCCTCTCCACCTCAATCCCTCTCGCCGCCATGGCCGCCGCCGCCATTGTTGTCTTGCTCGTCTGCTCGCTGCCGTCTCTGCTCGTCTGCTCGCTGCCGTCTCTGCTCGTCGGCGCCGCTGCTGCGGGCGGGCGGGGAGAAGCAGTCGTACGTCGTGTATCTTGGAGAGCACGCCCATGGCGAGCGGCTGGGCGCCGCCGCCGCCGCTGACGTCGACGTCGAGGCGCTCGCGCGGCAGGCGGAGGATTCGCACTGCGAGCTCCTCGCCGGCGTCCTCGGAGACAAGGAGAAGGCGCGGGAGGCCATCTTCTACTCGCACACGCGCCACATCAACGGCTTCGCGGCCAACCTCGACGCCGCCGCCGCCGCCAAGATCGCCGAGAAGCCGGGCGTCGTGTCGGTGTTCCCGAACAGAGGCCACAAGCTGCACACGACGCGTTCGTGGCAATTCCTCGGCCTCGCCGGCGTCGGCGGCGCCCCCACCGGCGCCGCCTGGAAGAAGGCCAGGTTCGGCGAGGACACCATCATCGGCAACCTCGACACCGGTGTGTGGCCAGAATCAGAGAGCTTCAGGGATGATGGATTGGGGCCTATTCCATCGTGGTGGAGAGGAGAATGCCAGAAAGGCCAAGATGATGCATTCTCTTGCAACAGGAAGCTGATCGGTGCGCGCTTCTTCAACAAGGGGTACGCGTCGGCGGTGGGCAACCTCAACACCTCCCTCTTCGACACGCCGCGCGACACCGACGGCCACGGCACGCACACGCTCTCCACGGCGGGCGGCGCGCCGGTGGCCGGCGCCAGCGTCTTCGGCTACGGCAACGGCACGGCGAGCGGCGGCTCGCCGATGGCGCGCGTGGCTGCGTACCGCGTCTGCTACACCCCCGTCAACGGCAGCGAGTGCTTCGACGCCGACATCCTCGCCGCGTTCGACGCCGCCATCCACGACGGCGTCCACGTCCTCTCCGTCTCCCTCGGCGGCGACGCGGGCGACTACTTCGCCGACGGCCTCGCCATCGGCTCCTTCCACGCCGTCCGCCACGGCATCGCCGTTGTCTGCTCCGCCGGCAACTCGGGCCCCGCCCCCGGCACCGTCTCCAACGTCGCGCCGTGGCTCTTCACCGCCGCCGCGAGCACCATGGACCGCGAGTTCCCTGCCTACGTCGTCTTCAACGACACCAAGCTCAAGGGCCAGAGCCTCTCCGCCTCCGCCCTCTCGCCGGCGTCGAGCTCCTTCCCCATGATCGACTCCTCCCTAGCTGCCTCTCCCAACCGGACTCAAAACGAATCGCAGCTTTGTTTCCTGGGATCGCTTGATCCGGAGAAGGTGAAGGGGAAGATCGTGGTGTGCTTGAGAGGAGTGAACCCGAGGGTGGAGAAGGGCGAGGCGGTGCTGGAAGCCGGCGGCGCCGGGATGGTGCTCGCCAACGACGTCACCACCGGCAACGAGATCATCGCTGACGCCCATGTCCTCCCCGCCACCCACATCAAGTTCAGCGACGGCCAGATCCTCTTCTCCTACCTCAAGAACACCAAGAGTCCGGCGGGGACGATAACGAGGCCGGAGACGAGGCTGGGGACGAAGCCGGCGCCTTTCATGGCGGCGTTCTCGTCGCAGGGGCCGAACACGGTGACGCCGGGGATCCTGAAGCCGGACATCACGGCGCCCGGGGTGAGCGTGGTGGCGGCGTGGACGCGAGCCAGCGCGCCGACGGACCTCGCCTTCGACAAGCGCCGCGTCGCCTTCAACTCCGAGTTCGGGACGTCCATGTGCGTACCCGCACGTCACCGGCGTCGTCGGCGTGCTCCGCACGCTGCGCCCCGACTGGAGCCCCGCGGCGACTCGCTCCGCGCTCATGACCACCGCCGTCGAGGTGGACAACGAGCGGCACGCCATCCTCAACTCCTCCTTCGCCGCCGCCAACCCGGTTCGGGTGTCGGCGCCGGCCACGTCTCCCCGGCCCGCGCCATGAACCCGGGCCTCGTCTACGACCTCGCCGCCGTCGACTACCTCAACTTCCTCTGCTCCCTCAGCTACAACGCCACCGTCATGGCCATGTTCGCCGGCGGCGGCGGCGCGGCGCCGTTCCGGTGCCCGGCCTCGCCGCCCAAGGTGCAGGACCTCAACTACCCGTCCATCACCGTCGTCAACCTCACCTCGTCGGCCACCGTCCGGCGCACGGTGAAGAACGTCGGCAAGCCGGGGGTCTACAAGGCGTACGTGACCTCGCCGGCCGGCGTGCGCGTCACGGTGAGCCCGGACACGCTGCCGTTCTTGCTCAAGGGGGAGAAGAAGACGTTCCAGGTGAGGTTCGAGGTGACGAACGCGTCGCTCGCCATGGATTACTCCTTCGGCGCGCTCGTCTGGACCAACGGCAAGCAGTTCGTCAGGTCGCCTCTCGTGGTGAAGACGACGACGCCGACGATGGCATGATCGTGATTAATAATTATTAATTATATATAGGGTATTGGTTGATTAATTATTAATCGATTTAATTAGGTTTAGGAGGGGTGGTGGTGTGTAAAGAAGCAGACATAATTAAACGTTTGTTTGAATTCTTTAGCTTCAGAAAATCTAAATGTTTCATGTGCATTTGCTCGGAAAGTCATGGAAAATTCTGAAAAAAGAAAAGAAAATCAATAATAATACCCGTTACAGTAGAAAAAAAA]

[+] EMBL AK120287             [CTCCCATCCTCTCCACCTCAATCCCTCTCGCCGCCATGGCCGCCGCCGCCATTGTTGTCTTGCTCGTCTGCTCGCTGCCGTCTCTGCTCGTCTGCTCGCTGCCGTCTCTGCTCGTCGGCGCCGCTGCTGCGGGCGGGCGGGGAGAAGCAGTCGTACGTCGTGTATCTTGGAGAGCACGCCCATGGCGAGCGGCTGGGCGCCGCCGCCGCCGCTGACGTCGACGTCGAGGCGCTCGCGCGGCAGGCGGAGGATTCGCACTGCGAGCTCCTCGCCGGCGTCCTCGGAGACAAGGAGAAGGCGCGGGAGGCCATCTTCTACTCGCACACGCGCCACATCAACGGCTTCGCGGCCAACCTCGACGCCGCCGCCGCCGCCAAGATCGCCGAGAAGCCGGGCGTCGTGTCGGTGTTCCCGAACAGAGGCCACAAGCTGCACACGACGCGTTCGTGGCAATTCCTCGGCCTCGCCGGCGTCGGCGGCGCCCCCACCGGCGCCGCCTGGAAGAAGGCCAGGTTCGGCGAGGACACCATCATCGGCAACCTCGACACCGGTGTGTGGCCAGAATCAGAGAGCTTCAGGGATGATGGATTGGGGCCTATTCCATCGTGGTGGAGAGGAGAATGCCAGAAAGGCCAAGATGATGCATTCTCTTGCAACAGGAAGCTGATCGGTGCGCGCTTCTTCAACAAGGGGTACGCGTCGGCGGTGGGCAACCTCAACACCTCCCTCTTCGACACGCCGCGCGACACCGACGGCCACGGCACGCACACGCTCTCCACGGCGGGCGGCGCGCCGGTGGCCGGCGCCAGCGTCTTCGGCTACGGCAACGGCACGGCGAGCGGCGGCTCGCCGATGGCGCGCGTGGCTGCGTACCGCGTCTGCTACACCCCCGTCAACGGCAGCGAGTGCTTCGACGCCGACATCCTCGCCGCGTTCGACGCCGCCATCCACGACGGCGTCCACGTCCTCTCCGTCTCCCTCGGCGGCGACGCGGGCGACTACTTCGCCGACGGCCTCGCCATCGGCTCCTTCCACGCCGTCCGCCACGGCATCGCCGTTGTCTGCTCCGCCGGCAACTCGGGCCCCGCCCCCGGCACCGTCTCCAACGTCGCGCCGTGGCTCTTCACCGCCGCCGCGAGCACCATGGACCGCGAGTTCCCTGCCTACGTCGTCTTCAACGACACCAAGCTCAAGGGCCAGAGCCTCTCCGCCTCCGCCCTCTCGCCGGCGTCGAGCTCCTTCCCCATGATCGACTCCTCCCTAGCTGCCTCTCCCAACCGGACTCAAAACGAATCGCAGCTTTGTTTCCTGGGATCGCTTGATCCGGAGAAGGTGAAGGGGAAGATCGTGGTGTGCTTGAGAGGAGTGAACCCGAGGGTGGAGAAGGGCGAGGCGGTGCTGGAAGCCGGCGGCGCCGGGATGGTGCTCGCCAACGACGTCACCACCGGCAACGAGATCATCGCTGACGCCCATGTCCTCCCCGCCACCCACATCAAGTTCAGCGACGGCCAGATCCTCTTCTCCTACCTCAAGAACACCAAGAGTCCGGCGGGGACGATAACGAGGCCGGAGACGAGGCTGGGGACGAAGCCGGCGCCTTTCATGGCGGCGTTCTCGTCGCAGGGGCCGAACACGGTGACGCCGGGGATCCTGAAGCCGGACATCACGGCGCCCGGGGTGAGCGTGGTGGCGGCGTGGACGCGAGCCAGCGCGCCGACGGACCTCGCCTTCGACAAGCGCCGCGTCGCCTTCAACTCCGAGTTCGGGACGTCCATGTGCGTACCCGCACGTCACCGGCGTCGTCGGCGTGCTCCGCACGCTGCGCCCCGACTGGAGCCCCGCGGCGACTCGCTCCGCGCTCATGACCACCGCCGTCGAGGTGGACAACGAGCGGCACGCCATCCTCAACTCCTCCTTCGCCGCCGCCAACCCGGTTCGGGTGTCGGCGCCGGCCACGTCTCCCCGGCCCGCGCCATGAACCCGGGCCTCGTCTACGACCTCGCCGCCGTCGACTACCTCAACTTCCTCTGCTCCCTCAGCTACAACGCCACCGTCATGGCCATGTTCGCCGGCGGCGGCGGCGCGGCGCCGTTCCGGTGCCCGGCCTCGCCGCCCAAGGTGCAGGACCTCAACTACCCGTCCATCACCGTCGTCAACCTCACCTCGTCGGCCACCGTCCGGCGCACGGTGAAGAACGTCGGCAAGCCGGGGGTCTACAAGGCGTACGTGACCTCGCCGGCCGGCGTGCGCGTCACGGTGAGCCCGGACACGCTGCCGTTCTTGCTCAAGGGGGAGAAGAAGACGTTCCAGGTGAGGTTCGAGGTGACGAACGCGTCGCTCGCCATGGATTACTCCTTCGGCGCGCTCGTCTGGACCAACGGCAAGCAGTTCGTCAGGTCGCCTCTCGTGGTGAAGACGACGACGCCGACGATGGCATGATCGTGATTAATAATTATTAATTATATATAGGGTATTGGTTGATTAATTATTAATCGATTTAATTAGGTTTAGGAGGGGTGGTGGTGTGTAAAGAAGCAGACATAATTAAACGTTTGTTTGAATTCTTTAGCTTCAGAAAATCTAAATGTTTCATGT                                                                                ]
[-] EMBL CA760776             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AGAGGACGA GACAAGG  GGCATGATCGTGATTAATAATTATTAATTATATATAGGGTATTGGTTTATTAATTATTAATCGATTTAATTAGGTTTAGGAGGGGTGGTGGTGTGTAAAGAAGCAGACATAATTAAACGTTTGTTTGAATTCTTTAGCTTCAGAAAATCTAAATGTTTCATGTGCATTTGCTCGGAAAGTCATGGAAAATTCTGAAAAAAGAAAAGAAAATCAATAATAATACCCGTTACAGTAGAAAAAAAA]


>consensus_4005#0 CTCCCATCCTCTCCACCTCAATCCCTCTCGCCGCCATGGCCGCCGCCGCCATTGTTGTCT TGCTCGTCTGCTCGCTGCCGTCTCTGCTCGTCTGCTCGCTGCCGTCTCTGCTCGTCGGCG CCGCTGCTGCGGGCGGGCGGGGAGAAGCAGTCGTACGTCGTGTATCTTGGAGAGCACGCC CATGGCGAGCGGCTGGGCGCCGCCGCCGCCGCTGACGTCGACGTCGAGGCGCTCGCGCGG CAGGCGGAGGATTCGCACTGCGAGCTCCTCGCCGGCGTCCTCGGAGACAAGGAGAAGGCG CGGGAGGCCATCTTCTACTCGCACACGCGCCACATCAACGGCTTCGCGGCCAACCTCGAC GCCGCCGCCGCCGCCAAGATCGCCGAGAAGCCGGGCGTCGTGTCGGTGTTCCCGAACAGA GGCCACAAGCTGCACACGACGCGTTCGTGGCAATTCCTCGGCCTCGCCGGCGTCGGCGGC GCCCCCACCGGCGCCGCCTGGAAGAAGGCCAGGTTCGGCGAGGACACCATCATCGGCAAC CTCGACACCGGTGTGTGGCCAGAATCAGAGAGCTTCAGGGATGATGGATTGGGGCCTATT CCATCGTGGTGGAGAGGAGAATGCCAGAAAGGCCAAGATGATGCATTCTCTTGCAACAGG AAGCTGATCGGTGCGCGCTTCTTCAACAAGGGGTACGCGTCGGCGGTGGGCAACCTCAAC ACCTCCCTCTTCGACACGCCGCGCGACACCGACGGCCACGGCACGCACACGCTCTCCACG GCGGGCGGCGCGCCGGTGGCCGGCGCCAGCGTCTTCGGCTACGGCAACGGCACGGCGAGC GGCGGCTCGCCGATGGCGCGCGTGGCTGCGTACCGCGTCTGCTACACCCCCGTCAACGGC AGCGAGTGCTTCGACGCCGACATCCTCGCCGCGTTCGACGCCGCCATCCACGACGGCGTC CACGTCCTCTCCGTCTCCCTCGGCGGCGACGCGGGCGACTACTTCGCCGACGGCCTCGCC ATCGGCTCCTTCCACGCCGTCCGCCACGGCATCGCCGTTGTCTGCTCCGCCGGCAACTCG GGCCCCGCCCCCGGCACCGTCTCCAACGTCGCGCCGTGGCTCTTCACCGCCGCCGCGAGC ACCATGGACCGCGAGTTCCCTGCCTACGTCGTCTTCAACGACACCAAGCTCAAGGGCCAG AGCCTCTCCGCCTCCGCCCTCTCGCCGGCGTCGAGCTCCTTCCCCATGATCGACTCCTCC CTAGCTGCCTCTCCCAACCGGACTCAAAACGAATCGCAGCTTTGTTTCCTGGGATCGCTT GATCCGGAGAAGGTGAAGGGGAAGATCGTGGTGTGCTTGAGAGGAGTGAACCCGAGGGTG GAGAAGGGCGAGGCGGTGCTGGAAGCCGGCGGCGCCGGGATGGTGCTCGCCAACGACGTC ACCACCGGCAACGAGATCATCGCTGACGCCCATGTCCTCCCCGCCACCCACATCAAGTTC AGCGACGGCCAGATCCTCTTCTCCTACCTCAAGAACACCAAGAGTCCGGCGGGGACGATA ACGAGGCCGGAGACGAGGCTGGGGACGAAGCCGGCGCCTTTCATGGCGGCGTTCTCGTCG CAGGGGCCGAACACGGTGACGCCGGGGATCCTGAAGCCGGACATCACGGCGCCCGGGGTG AGCGTGGTGGCGGCGTGGACGCGAGCCAGCGCGCCGACGGACCTCGCCTTCGACAAGCGC CGCGTCGCCTTCAACTCCGAGTTCGGGACGTCCATGTGCGTACCCGCACGTCACCGGCGT CGTCGGCGTGCTCCGCACGCTGCGCCCCGACTGGAGCCCCGCGGCGACTCGCTCCGCGCT CATGACCACCGCCGTCGAGGTGGACAACGAGCGGCACGCCATCCTCAACTCCTCCTTCGC CGCCGCCAACCCGGTTCGGGTGTCGGCGCCGGCCACGTCTCCCCGGCCCGCGCCATGAAC CCGGGCCTCGTCTACGACCTCGCCGCCGTCGACTACCTCAACTTCCTCTGCTCCCTCAGC TACAACGCCACCGTCATGGCCATGTTCGCCGGCGGCGGCGGCGCGGCGCCGTTCCGGTGC CCGGCCTCGCCGCCCAAGGTGCAGGACCTCAACTACCCGTCCATCACCGTCGTCAACCTC ACCTCGTCGGCCACCGTCCGGCGCACGGTGAAGAACGTCGGCAAGCCGGGGGTCTACAAG GCGTACGTGACCTCGCCGGCCGGCGTGCGCGTCACGGTGAGCCCGGACACGCTGCCGTTC TTGCTCAAGGGGGAGAAGAAGACGTTCCAGGTGAGGTTCGAGGTGACGAACGCGTCGCTC GCCATGGATTACTCCTTCGGCGCGCTCGTCTGGACCAACGGCAAGCAGTTCGTCAGGTCG CCTCTCGTGGTGAAGACGACGACGCCGACGATGGCATGATCGTGATTAATAATTATTAAT TATATATAGGGTATTGGTTGATTAATTATTAATCGATTTAATTAGGTTTAGGAGGGGTGG TGGTGTGTAAAGAAGCAGACATAATTAAACGTTTGTTTGAATTCTTTAGCTTCAGAAAAT CTAAATGTTTCATGTGCATTTGCTCGGAAAGTCATGGAAAATTCTGAAAAAAGAAAAGAA AATCAATAATAATACCCGTTACAGTAGAAAAAAAA



consensusID : consensus_4005#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1389
fasta sequence
                              [GAGATGCAGGCAGCTTTGTTTCCTGGGATCGCTTGATCCGGAGAAGGTGAAGGGGAAGATCGTGGTGTGCTTGAGAGGAGTGAACCCGAGGGTGGAGAAGGGCGAGGCGGTGCTGGAAGCCGGCGGCGCCGGGATGGTGCTCGCCAACGACGTCACCACCGGCAACGAGATCATCGCTGACGCCCATGTCCTCCCCGCCACCCACATCAAGTTCAGCGACGGCCAGATCCTCTTCTCCTACCTCAAGAACACCAAGTAATCAAGCAGCCGAAAACATTGTGCTCGCCGTTGATCGATTTGCTCGCCGGCGTCGCTGATGTGTGGGTTGTGTTTTAGGAGTCCGGCGGGGACGATAACGAGGCCGGAGACGAGGCTGGGGACGAAGCCGGCGCCTTTCATGGCGGCGTTCTCGTCGCAGGGGCCGAACACGGTGACGCCGGGGATCCTGAAGCCGGACATCACGGCGCCCGGGGTGAGCGTGGTGGCGGCGTGGACGCGAGCCAGCGCGCCGACGGACCTCGCCTTCGACAAGCGCCGCGTCGCCTTCAACTCCGAGTCCGGGACGTCCATGTCGTGCCCGCACGTCGCCGGCGTCGTCGGCCTGCTCCGCACGCTGCGCCCCGACTGGAGCCCCGCGGCGATCCGCTCCGCGCTCATGACCACCGCCGTCGAGGTGGACAACGAGCGGCACGCCATCCTCAACTCCTCCTTCGCCGCCGCCAACCCGTTCGGCTTCGGCGCCGGCCACGTCTCCCCGGCCCGCGCCATGAACCCGGGCCTCGTCTACGACCTCGCCGCCGTCGACTACCTCAACTTCCTCTGCTCCCTCAGCTACAACGCCACCGTCATGGCCATGTTCGCCGGCGGCGGCGGCGCGGCGCCGTTCCGGTGCCCGGCCTCGCCGCCCAAGGTGCAGGACCTCAACTACCCGTCCATCACCGTCGTCAACCTCACCTCGTCGGCCACCGTCCGGCGCACGGTGAAGAACGTCGGCAAGCCGGGGGTCTACAAGGCGTACGTGACCTCGCCGGCCGGCGTGCGCGTCACGGTGAGCCCGGACACGCTGCCGTTCTTGCTCAAGGGGGAGAAGAAGACGTTCCAGGTGAGGTTCGAGGTGACGAACGCGTCGCTCGCCATGGATTACTCCTTCGGCGCGCTCGTCTGGACCAACGGCAAGCAGTTCGTCAGGTCGCCTCTCGTGGTGAAGACGACGACGCCGACGATGGCATGATCGTGATTAATAATTATTAATTATATATAGGGTATTGGTTGATTAATTATTAATCGATTTAATTAGGTTTAGGAGGGGTGGTGGTGTGTAAAGAAGCAGACATAATTAAACGTTTGTTTGAATTCTTTAGCTTCAGAAAATCTAAATGTTTCATGTGC]

[+] EMBL AK106394             [GAGATGCAGGCAGCTTTGTTTCCTGGGATCGCTTGATCCGGAGAAGGTGAAGGGGAAGATCGTGGTGTGCTTGAGAGGAGTGAACCCGAGGGTGGAGAAGGGCGAGGCGGTGCTGGAAGCCGGCGGCGCCGGGATGGTGCTCGCCAACGACGTCACCACCGGCAACGAGATCATCGCTGACGCCCATGTCCTCCCCGCCACCCACATCAAGTTCAGCGACGGCCAGATCCTCTTCTCCTACCTCAAGAACACCAAGTAATCAAGCAGCCGAAAACATTGTGCTCGCCGTTGATCGATTTGCTCGCCGGCGTCGCTGATGTGTGGGTTGTGTTTTAGGAGTCCGGCGGGGACGATAACGAGGCCGGAGACGAGGCTGGGGACGAAGCCGGCGCCTTTCATGGCGGCGTTCTCGTCGCAGGGGCCGAACACGGTGACGCCGGGGATCCTGAAGCCGGACATCACGGCGCCCGGGGTGAGCGTGGTGGCGGCGTGGACGCGAGCCAGCGCGCCGACGGACCTCGCCTTCGACAAGCGCCGCGTCGCCTTCAACTCCGAGTCCGGGACGTCCATGTCGTGCCCGCACGTCGCCGGCGTCGTCGGCCTGCTCCGCACGCTGCGCCCCGACTGGAGCCCCGCGGCGATCCGCTCCGCGCTCATGACCACCGCCGTCGAGGTGGACAACGAGCGGCACGCCATCCTCAACTCCTCCTTCGCCGCCGCCAACCCGTTCGGCTTCGGCGCCGGCCACGTCTCCCCGGCCCGCGCCATGAACCCGGGCCTCGTCTACGACCTCGCCGCCGTCGACTACCTCAACTTCCTCTGCTCCCTCAGCTACAACGCCACCGTCATGGCCATGTTCGCCGGCGGCGGCGGCGCGGCGCCGTTCCGGTGCCCGGCCTCGCCGCCCAAGGTGCAGGACCTCAACTACCCGTCCATCACCGTCGTCAACCTCACCTCGTCGGCCACCGTCCGGCGCACGGTGAAGAACGTCGGCAAGCCGGGGGTCTACAAGGCGTACGTGACCTCGCCGGCCGGCGTGCGCGTCACGGTGAGCCCGGACACGCTGCCGTTCTTGCTCAAGGGGGAGAAGAAGACGTTCCAGGTGAGGTTCGAGGTGACGAACGCGTCGCTCGCCATGGATTACTCCTTCGGCGCGCTCGTCTGGACCAACGGCAAGCAGTTCGTCAGGTCGCCTCTCGTGGTGAAGACGACGACGCCGACGATGGCATGATCGTGATTAATAATTATTAATTATATATAGGGTATTGGTTGATTAATTATTAATCGATTTAATTAGGTTTAGGAGGGGTGGTGGTGTGTAAAGAAGCAGACATAATTAAACGTTTGTTTGAATTCTTTAGCTTCAGAAAATCTAAATGTTTCATGTGC]


>consensus_4005#1 GAGATGCAGGCAGCTTTGTTTCCTGGGATCGCTTGATCCGGAGAAGGTGAAGGGGAAGAT CGTGGTGTGCTTGAGAGGAGTGAACCCGAGGGTGGAGAAGGGCGAGGCGGTGCTGGAAGC CGGCGGCGCCGGGATGGTGCTCGCCAACGACGTCACCACCGGCAACGAGATCATCGCTGA CGCCCATGTCCTCCCCGCCACCCACATCAAGTTCAGCGACGGCCAGATCCTCTTCTCCTA CCTCAAGAACACCAAGTAATCAAGCAGCCGAAAACATTGTGCTCGCCGTTGATCGATTTG CTCGCCGGCGTCGCTGATGTGTGGGTTGTGTTTTAGGAGTCCGGCGGGGACGATAACGAG GCCGGAGACGAGGCTGGGGACGAAGCCGGCGCCTTTCATGGCGGCGTTCTCGTCGCAGGG GCCGAACACGGTGACGCCGGGGATCCTGAAGCCGGACATCACGGCGCCCGGGGTGAGCGT GGTGGCGGCGTGGACGCGAGCCAGCGCGCCGACGGACCTCGCCTTCGACAAGCGCCGCGT CGCCTTCAACTCCGAGTCCGGGACGTCCATGTCGTGCCCGCACGTCGCCGGCGTCGTCGG CCTGCTCCGCACGCTGCGCCCCGACTGGAGCCCCGCGGCGATCCGCTCCGCGCTCATGAC CACCGCCGTCGAGGTGGACAACGAGCGGCACGCCATCCTCAACTCCTCCTTCGCCGCCGC CAACCCGTTCGGCTTCGGCGCCGGCCACGTCTCCCCGGCCCGCGCCATGAACCCGGGCCT CGTCTACGACCTCGCCGCCGTCGACTACCTCAACTTCCTCTGCTCCCTCAGCTACAACGC CACCGTCATGGCCATGTTCGCCGGCGGCGGCGGCGCGGCGCCGTTCCGGTGCCCGGCCTC GCCGCCCAAGGTGCAGGACCTCAACTACCCGTCCATCACCGTCGTCAACCTCACCTCGTC GGCCACCGTCCGGCGCACGGTGAAGAACGTCGGCAAGCCGGGGGTCTACAAGGCGTACGT GACCTCGCCGGCCGGCGTGCGCGTCACGGTGAGCCCGGACACGCTGCCGTTCTTGCTCAA GGGGGAGAAGAAGACGTTCCAGGTGAGGTTCGAGGTGACGAACGCGTCGCTCGCCATGGA TTACTCCTTCGGCGCGCTCGTCTGGACCAACGGCAAGCAGTTCGTCAGGTCGCCTCTCGT GGTGAAGACGACGACGCCGACGATGGCATGATCGTGATTAATAATTATTAATTATATATA GGGTATTGGTTGATTAATTATTAATCGATTTAATTAGGTTTAGGAGGGGTGGTGGTGTGT AAAGAAGCAGACATAATTAAACGTTTGTTTGAATTCTTTAGCTTCAGAAAATCTAAATGT TTCATGTGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4005#0      CTCCCATCCTCTCCACCTCAATCCCTCTCGCCGCCATGGCCGCCGCCGCCATTGTTGTCT 60
consensus_4005#1      ------------------------------------------------------------
                                                                                  

consensus_4005#0      TGCTCGTCTGCTCGCTGCCGTCTCTGCTCGTCTGCTCGCTGCCGTCTCTGCTCGTCGGCG 120
consensus_4005#1      ------------------------------------------------------------
                                                                                  

consensus_4005#0      CCGCTGCTGCGGGCGGGCGGGGAGAAGCAGTCGTACGTCGTGTATCTTGGAGAGCACGCC 180
consensus_4005#1      ------------------------------------------------------------
                                                                                  

consensus_4005#0      CATGGCGAGCGGCTGGGCGCCGCCGCCGCCGCTGACGTCGACGTCGAGGCGCTCGCGCGG 240
consensus_4005#1      ------------------------------------------------------------
                                                                                  

consensus_4005#0      CAGGCGGAGGATTCGCACTGCGAGCTCCTCGCCGGCGTCCTCGGAGACAAGGAGAAGGCG 300
consensus_4005#1      ------------------------------------------------------------
                                                                                  

consensus_4005#0      CGGGAGGCCATCTTCTACTCGCACACGCGCCACATCAACGGCTTCGCGGCCAACCTCGAC 360
consensus_4005#1      ------------------------------------------------------------
                                                                                  

consensus_4005#0      GCCGCCGCCGCCGCCAAGATCGCCGAGAAGCCGGGCGTCGTGTCGGTGTTCCCGAACAGA 420
consensus_4005#1      ------------------------------------------------------------
                                                                                  

consensus_4005#0      GGCCACAAGCTGCACACGACGCGTTCGTGGCAATTCCTCGGCCTCGCCGGCGTCGGCGGC 480
consensus_4005#1      ------------------------------------------------------------
                                                                                  

consensus_4005#0      GCCCCCACCGGCGCCGCCTGGAAGAAGGCCAGGTTCGGCGAGGACACCATCATCGGCAAC 540
consensus_4005#1      ------------------------------------------------------------
                                                                                  

consensus_4005#0      CTCGACACCGGTGTGTGGCCAGAATCAGAGAGCTTCAGGGATGATGGATTGGGGCCTATT 600
consensus_4005#1      ------------------------------------------------------------
                                                                                  

consensus_4005#0      CCATCGTGGTGGAGAGGAGAATGCCAGAAAGGCCAAGATGATGCATTCTCTTGCAACAGG 660
consensus_4005#1      ------------------------------------------------------------
                                                                                  

consensus_4005#0      AAGCTGATCGGTGCGCGCTTCTTCAACAAGGGGTACGCGTCGGCGGTGGGCAACCTCAAC 720
consensus_4005#1      ------------------------------------------------------------
                                                                                  

consensus_4005#0      ACCTCCCTCTTCGACACGCCGCGCGACACCGACGGCCACGGCACGCACACGCTCTCCACG 780
consensus_4005#1      ------------------------------------------------------------
                                                                                  

consensus_4005#0      GCGGGCGGCGCGCCGGTGGCCGGCGCCAGCGTCTTCGGCTACGGCAACGGCACGGCGAGC 840
consensus_4005#1      ------------------------------------------------------------
                                                                                  

consensus_4005#0      GGCGGCTCGCCGATGGCGCGCGTGGCTGCGTACCGCGTCTGCTACACCCCCGTCAACGGC 900
consensus_4005#1      ------------------------------------------------------------
                                                                                  

consensus_4005#0      AGCGAGTGCTTCGACGCCGACATCCTCGCCGCGTTCGACGCCGCCATCCACGACGGCGTC 960
consensus_4005#1      ------------------------------------------------------------
                                                                                  

consensus_4005#0      CACGTCCTCTCCGTCTCCCTCGGCGGCGACGCGGGCGACTACTTCGCCGACGGCCTCGCC 1020
consensus_4005#1      ------------------------------------------------------------
                                                                                  

consensus_4005#0      ATCGGCTCCTTCCACGCCGTCCGCCACGGCATCGCCGTTGTCTGCTCCGCCGGCAACTCG 1080
consensus_4005#1      ------------------------------------------------------------
                                                                                  

consensus_4005#0      GGCCCCGCCCCCGGCACCGTCTCCAACGTCGCGCCGTGGCTCTTCACCGCCGCCGCGAGC 1140
consensus_4005#1      ------------------------------------------------------------
                                                                                  

consensus_4005#0      ACCATGGACCGCGAGTTCCCTGCCTACGTCGTCTTCAACGACACCAAGCTCAAGGGCCAG 1200
consensus_4005#1      ------------------------------------------------------------
                                                                                  

consensus_4005#0      AGCCTCTCCGCCTCCGCCCTCTCGCCGGCGTCGAGCTCCTTCCCCATGATCGACTCCTCC 1260
consensus_4005#1      ------------------------------------------------------------
                                                                                  

consensus_4005#0      CTAGCTGCCTCTCCCAACCGGACTCAAAACGAATCGCAGCTTTGTTTCCTGGGATCGCTT 1320
consensus_4005#1      -------------------------GAGATGCAG-GCAGCTTTGTTTCCTGGGATCGCTT 34
                                                * * * *  *************************

consensus_4005#0      GATCCGGAGAAGGTGAAGGGGAAGATCGTGGTGTGCTTGAGAGGAGTGAACCCGAGGGTG 1380
consensus_4005#1      GATCCGGAGAAGGTGAAGGGGAAGATCGTGGTGTGCTTGAGAGGAGTGAACCCGAGGGTG 94
                      ************************************************************

consensus_4005#0      GAGAAGGGCGAGGCGGTGCTGGAAGCCGGCGGCGCCGGGATGGTGCTCGCCAACGACGTC 1440
consensus_4005#1      GAGAAGGGCGAGGCGGTGCTGGAAGCCGGCGGCGCCGGGATGGTGCTCGCCAACGACGTC 154
                      ************************************************************

consensus_4005#0      ACCACCGGCAACGAGATCATCGCTGACGCCCATGTCCTCCCCGCCACCCACATCAAGTTC 1500
consensus_4005#1      ACCACCGGCAACGAGATCATCGCTGACGCCCATGTCCTCCCCGCCACCCACATCAAGTTC 214
                      ************************************************************

consensus_4005#0      AGCGACGGCCAGATCCTCTTCTCCTACCTCAAGAACACCAAG------------------ 1542
consensus_4005#1      AGCGACGGCCAGATCCTCTTCTCCTACCTCAAGAACACCAAGTAATCAAGCAGCCGAAAA 274
                      ******************************************                  

consensus_4005#0      ------------------------------------------------------------
consensus_4005#1      CATTGTGCTCGCCGTTGATCGATTTGCTCGCCGGCGTCGCTGATGTGTGGGTTGTGTTTT 334
                                                                                  

consensus_4005#0      ---AGTCCGGCGGGGACGATAACGAGGCCGGAGACGAGGCTGGGGACGAAGCCGGCGCCT 1599
consensus_4005#1      AGGAGTCCGGCGGGGACGATAACGAGGCCGGAGACGAGGCTGGGGACGAAGCCGGCGCCT 394
                         *********************************************************

consensus_4005#0      TTCATGGCGGCGTTCTCGTCGCAGGGGCCGAACACGGTGACGCCGGGGATCCTGAAGCCG 1659
consensus_4005#1      TTCATGGCGGCGTTCTCGTCGCAGGGGCCGAACACGGTGACGCCGGGGATCCTGAAGCCG 454
                      ************************************************************

consensus_4005#0      GACATCACGGCGCCCGGGGTGAGCGTGGTGGCGGCGTGGACGCGAGCCAGCGCGCCGACG 1719
consensus_4005#1      GACATCACGGCGCCCGGGGTGAGCGTGGTGGCGGCGTGGACGCGAGCCAGCGCGCCGACG 514
                      ************************************************************

consensus_4005#0      GACCTCGCCTTCGACAAGCGCCGCGTCGCCTTCAACTCCGAGTTCGGGACGTCCATGTGC 1779
consensus_4005#1      GACCTCGCCTTCGACAAGCGCCGCGTCGCCTTCAACTCCGAGTCCGGGACGTCCATGT-C 573
                      ******************************************* ************** *

consensus_4005#0      GTACCCGCACGTCACCGGCGTCGTCGGCGTGCTCCGCACGCTGCGCCCCGACTGGAGCCC 1839
consensus_4005#1      GTGCCCGCACGTCGCCGGCGTCGTCGGCCTGCTCCGCACGCTGCGCCCCGACTGGAGCCC 633
                      ** ********** ************** *******************************

consensus_4005#0      CGCGGCGACTCGCTCCGCGCTCATGACCACCGCCGTCGAGGTGGACAACGAGCGGCACGC 1899
consensus_4005#1      CGCGGCGATCCGCTCCGCGCTCATGACCACCGCCGTCGAGGTGGACAACGAGCGGCACGC 693
                      ********  **************************************************

consensus_4005#0      CATCCTCAACTCCTCCTTCGCCGCCGCCAACCCGGTTCGGGTGTCGGCGCCGGCCACGTC 1959
consensus_4005#1      CATCCTCAACTCCTCCTTCGCCGCCGCCAACCCG-TTCGGCT-TCGGCGCCGGCCACGTC 751
                      ********************************** ***** * *****************

consensus_4005#0      TCCCCGGCCCGCGCCATGAACCCGGGCCTCGTCTACGACCTCGCCGCCGTCGACTACCTC 2019
consensus_4005#1      TCCCCGGCCCGCGCCATGAACCCGGGCCTCGTCTACGACCTCGCCGCCGTCGACTACCTC 811
                      ************************************************************

consensus_4005#0      AACTTCCTCTGCTCCCTCAGCTACAACGCCACCGTCATGGCCATGTTCGCCGGCGGCGGC 2079
consensus_4005#1      AACTTCCTCTGCTCCCTCAGCTACAACGCCACCGTCATGGCCATGTTCGCCGGCGGCGGC 871
                      ************************************************************

consensus_4005#0      GGCGCGGCGCCGTTCCGGTGCCCGGCCTCGCCGCCCAAGGTGCAGGACCTCAACTACCCG 2139
consensus_4005#1      GGCGCGGCGCCGTTCCGGTGCCCGGCCTCGCCGCCCAAGGTGCAGGACCTCAACTACCCG 931
                      ************************************************************

consensus_4005#0      TCCATCACCGTCGTCAACCTCACCTCGTCGGCCACCGTCCGGCGCACGGTGAAGAACGTC 2199
consensus_4005#1      TCCATCACCGTCGTCAACCTCACCTCGTCGGCCACCGTCCGGCGCACGGTGAAGAACGTC 991
                      ************************************************************

consensus_4005#0      GGCAAGCCGGGGGTCTACAAGGCGTACGTGACCTCGCCGGCCGGCGTGCGCGTCACGGTG 2259
consensus_4005#1      GGCAAGCCGGGGGTCTACAAGGCGTACGTGACCTCGCCGGCCGGCGTGCGCGTCACGGTG 1051
                      ************************************************************

consensus_4005#0      AGCCCGGACACGCTGCCGTTCTTGCTCAAGGGGGAGAAGAAGACGTTCCAGGTGAGGTTC 2319
consensus_4005#1      AGCCCGGACACGCTGCCGTTCTTGCTCAAGGGGGAGAAGAAGACGTTCCAGGTGAGGTTC 1111
                      ************************************************************

consensus_4005#0      GAGGTGACGAACGCGTCGCTCGCCATGGATTACTCCTTCGGCGCGCTCGTCTGGACCAAC 2379
consensus_4005#1      GAGGTGACGAACGCGTCGCTCGCCATGGATTACTCCTTCGGCGCGCTCGTCTGGACCAAC 1171
                      ************************************************************

consensus_4005#0      GGCAAGCAGTTCGTCAGGTCGCCTCTCGTGGTGAAGACGACGACGCCGACGATGGCATGA 2439
consensus_4005#1      GGCAAGCAGTTCGTCAGGTCGCCTCTCGTGGTGAAGACGACGACGCCGACGATGGCATGA 1231
                      ************************************************************

consensus_4005#0      TCGTGATTAATAATTATTAATTATATATAGGGTATTGGTTGATTAATTATTAATCGATTT 2499
consensus_4005#1      TCGTGATTAATAATTATTAATTATATATAGGGTATTGGTTGATTAATTATTAATCGATTT 1291
                      ************************************************************

consensus_4005#0      AATTAGGTTTAGGAGGGGTGGTGGTGTGTAAAGAAGCAGACATAATTAAACGTTTGTTTG 2559
consensus_4005#1      AATTAGGTTTAGGAGGGGTGGTGGTGTGTAAAGAAGCAGACATAATTAAACGTTTGTTTG 1351
                      ************************************************************

consensus_4005#0      AATTCTTTAGCTTCAGAAAATCTAAATGTTTCATGTGCATTTGCTCGGAAAGTCATGGAA 2619
consensus_4005#1      AATTCTTTAGCTTCAGAAAATCTAAATGTTTCATGTGC---------------------- 1389
                      **************************************                      

consensus_4005#0      AATTCTGAAAAAAGAAAAGAAAATCAATAATAATACCCGTTACAGTAGAAAAAAAA 2675
consensus_4005#1      --------------------------------------------------------
                                                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)