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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4006#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence
[TCTTCTTGTTGGCTCGCCGCGTGCGTGTCAACTCCGAGACGCAACTTTGATCCGAGCGGCGGCGGCGGCGGCGGCGGGAGGAGGAGGAGATGGCGCAGCAGAGCAAGGAGCCGTGCAAGAAGGAGGCGTGCGACATCCAGGCCTGCCTCTCCAAGAACATGTTCGATTCCAAGAAATGTGTGAGAGTTATCCAATTACTTCAATCCTGCTGTGAGCAGTGCGAGTACAAATCAACACACTGCGGTTCTTTGACTGGATTATTGAAAAACATTTCCAAGTGATGAAACAATACAGACATGTTTCTCTGCAGCTGTCAAATAAAAGTTCTTTTAGGTTTGCTTAGGATTGAGAGTGATAACCGAGTTTCTTATGCATCATGATGACTCAGGGGGAAGTAACAAACCCGTCCTCAGCCTGAAGAAGATGAATGGTGTTCTTATGGCTGAGTTGTTTTGTGCTTAATCGGTCAACAGATAGACGCTACTTTAAGATAGATACCAGTACCCCTAATTCCTTGTATATGTGGTGCCCTTCATACTACATGCTCTTGTAGACATGTGATCTCATGTTCCCTTCAAAGTATAATAAGTGTTCACCTGGAATTTCATTAATGCACATTATGATGGTGTAAGTTTTTTCAGTGCGCTGTTTTTTATCCTTACAATATCTTCTACAGTAATAAAGTTA]
[+] EMBL AK120295 [TCTTCTTGTTGGCTCGCCGCGTGCGTGTCAACTCCGAGACGCAACTTTGATCCGAGCGGCGGCGGCGGCGGCGGCGGGAGGAGGAGGAGATGGCGCAGCAGAGCAAGGAGCCGTGCAAGAAGGAGGCGTGCGACATCCAGGCCTGCCTCTCCAAGAACATGTTCGATTCCAAGAAATGTGTGAGAGTTATCCAATTACTTCAATCCTGCTGTGAGCAGTGCGAGTACAAATCAACACACTGCGGTTCTTTGACTGGATTATTGAAAAACATTTCCAAGTGATGAAACAATACAGACATGTTTCTCTGCAGCTGTCAAATAAAAGTTCTTTTAGGTTTGCTTAGGATTGAGAGTGATAACCGAGTTTCTTATGCATCATGATGACTCAGGGGGAAGTAACAAACCCGTCCTCAGCCTGAAGAAGATGAATGGTGTTCTTATGGCTGAGTTGTTTTGTGCTTAATCGGTCAACAGATAGACGCTACTTTAAGATAGATACCAGTACCCCTAATTCCTTGTATATGTGGTGCCCTTCATACTACATGCTCTTGTAGACATGTGATCTCATGTTCCCTTCAAAGTATAATAAGTGTTCACCTGGAATTTCATTAATGCACATTATGATGGTGTAAGTTTTTTCAGTGCGCTGTTTTTTATCCTTACAATATCTTCTACAGTAATAAAGTTA]
consensusID : consensus_4006#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence
[ACTTTGATCCGAGCGGCGGCGGACGGCGGCGGCGGGAGGAGGAGGAGATGGCGCANAGNAGCAAGGAGCCGTGCAAGAAGGAGGCGTGCGACATCCAGGCCTGCCTCTCCAAGAACATGTTCGATTCCAAGAAATGTGTGAGAGTTATCCAATTACTTCAATCCTGCTGTGAGCAGTGCGAGTACAAATCAACACACTGCGGTTCTTTGACTGGATTATTGAAAAACATTTCCAAGTGATGAAACAATACAGACATGTTTCTCTGCAGCTGTCAAATAAAAATGACTCAGGGGGAAGTAACAACCCGTCCTCAGCCTGAAGAAGATGATGGTGTCCTTATGGCTGAGTTGTTTTGTGCTTATCGGNCCACAGATAGCGCTAC]
[+] EMBL C74653 [ACTTTGATCCGAGCGGCGGCGGACGGCGGCGGCGGGAGGAGGAGGAGATGGCGCANAGNAGCAAGGAGCCGTGCAAGAAGGAGGCGTGCGACATCCAGGCCTGCCTCTCCAAGAACATGTTCGATTCCAAGAAATGTGTGAGAGTTATCCAATTACTTCAATCCTGCTGTGAGCAGTGCGAGTACAAATCAACACACTGCGGTTCTTTGACTGGATTATTGAAAAACATTTCCAAGTGATGAAACAATACAGACATGTTTCTCTGCAGCTGTCAAATAAAAATGACTCAGGGGGAAGTAACAACCCGTCCTCAGCCTGAAGAAGATGATGGTGTCCTTATGGCTGAGTTGTTTTGTGCTTATCGGNCCACAGATAGCGCTAC]
consensusID : consensus_4006#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 334 fasta sequence
[CAGNGNACGNGCNATGGCGCCGGCGGCGGCGGGAGGAGGAGGAGATNTNGCANAGAGCAAGGAGCCGTNCAAGAAGGAGGCGTGCNACATCCAGGCCTGCCTCTCCAAGAACATGTTCGATTCCAAGAAATGTGTGAAAGTTATCCAATTACTTCAATCCTGCTGTNAGCAGTGCGAGTACAAATNAACACACTGCGGTTCTTTGACTGGATTATTGAAAANCATTTCCAAGTGATGAAACAATACAGACATGTTTCTCTGCAGCTTGTCAAATAAAAGTNCTTTTAGGTTTGCTTAGGNTTTGAGAGTNATTACCGGGTTTCTTATGCATCAT]
[+] EMBL OSC24352 [CAGNGNACGNGCNATGGCGCCGGCGGCGGCGGGAGGAGGAGGAGATNTNGCANAGAGCAAGGAGCCGTNCAAGAAGGAGGCGTGCNACATCCAGGCCTGCCTCTCCAAGAACATGTTCGATTCCAAGAAATGTGTGAAAGTTATCCAATTACTTCAATCCTGCTGTNAGCAGTGCGAGTACAAATNAACACACTGCGGTTCTTTGACTGGATTATTGAAAANCATTTCCAAGTGATGAAACAATACAGACATGTTTCTCTGCAGCTTGTCAAATAAAAGTNCTTTTAGGTTTGCTTAGGNTTTGAGAGTNATTACCGGGTTTCTTATGCATCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4006#0 TCTTCTTGTTGGCTCGCCGCGTGCGTGTCAACTCCGAGACGCAACTTTGATCCGAGCGGC 60
consensus_4006#1 -------------------------------------------ACTTTGATCCGAGCGGC 17
consensus_4006#2 ---------------------------------------------CAGNGNACGNGCNAT 15
** **
consensus_4006#0 GGCGG-CGGCGGCGGCGGGAGGAGGAGGAGATGGCGCAGCAGAGCAAGGAGCCGTGCAAG 119
consensus_4006#1 GGCGGACGGCGGCGGCGGGAGGAGGAGGAGATGGCGCANAGNAGCAAGGAGCCGTGCAAG 77
consensus_4006#2 GGCGC-CGGCGGCGGCGGGAGGAGGAGGAGATNTNGCANA-GAGCAAGGAGCCGTNCAAG 73
**** ************************** *** ************* ****
consensus_4006#0 AAGGAGGCGTGCGACATCCAGGCCTGCCTCTCCAAGAACATGTTCGATTCCAAGAAATGT 179
consensus_4006#1 AAGGAGGCGTGCGACATCCAGGCCTGCCTCTCCAAGAACATGTTCGATTCCAAGAAATGT 137
consensus_4006#2 AAGGAGGCGTGCNACATCCAGGCCTGCCTCTCCAAGAACATGTTCGATTCCAAGAAATGT 133
************ ***********************************************
consensus_4006#0 GTGAGAGTTATCCAATTACTTCAATCCTGCTGTGAGCAGTGCGAGTACAAATCAACACAC 239
consensus_4006#1 GTGAGAGTTATCCAATTACTTCAATCCTGCTGTGAGCAGTGCGAGTACAAATCAACACAC 197
consensus_4006#2 GTGAAAGTTATCCAATTACTTCAATCCTGCTGTNAGCAGTGCGAGTACAAATNAACACAC 193
**** **************************** ****************** *******
consensus_4006#0 TGCGGTTCTTTGACTGGATTATTGAAAAACATTTCCAAGTGATGAAACAATACAGACATG 299
consensus_4006#1 TGCGGTTCTTTGACTGGATTATTGAAAAACATTTCCAAGTGATGAAACAATACAGACATG 257
consensus_4006#2 TGCGGTTCTTTGACTGGATTATTGAAAANCATTTCCAAGTGATGAAACAATACAGACATG 253
**************************** *******************************
consensus_4006#0 TTTCTCTGCAGCT-GTCAAATAAAAGTTCTTTTAGGTTTGCTTAGGATTGAGAGTGATAA 358
consensus_4006#1 TTTCTCTGCAGCT-GTCAAATAAAA----------------------------------- 281
consensus_4006#2 TTTCTCTGCAGCTTGTCAAATAAAA----------------------------------- 278
************* ***********
consensus_4006#0 CCGAGTTTCTTATGCATCATGATGACTCAGGGGGAAGTAACAAACCCGTCCTCAGCCTGA 418
consensus_4006#1 ---------------------ATGACTCAGGGGGAAGTAACAA-CCCGTCCTCAGCCTGA 319
consensus_4006#2 ---------------------------------GTNCTTTTAGGTTTGCTTAGGNTTTGA 305
* * * * ***
consensus_4006#0 AGAAGATGAATGGTGTTCTTATGGCTGAGTTGTTTTGTGCTTAATCGGTCAACAGATAGA 478
consensus_4006#1 AGAAGATGA-TGGTGTCCTTATGGCTGAGTTGTTTTGTGCTTA-TCGGNCCACAGATAG- 376
consensus_4006#2 GAGTNATTACCGGGTTTCTTATGCATCAT------------------------------- 334
** * ** * ****** * *
consensus_4006#0 CGCTACTTTAAGATAGATACCAGTACCCCTAATTCCTTGTATATGTGGTGCCCTTCATAC 538
consensus_4006#1 CGCTAC------------------------------------------------------ 382
consensus_4006#2 ------------------------------------------------------------
consensus_4006#0 TACATGCTCTTGTAGACATGTGATCTCATGTTCCCTTCAAAGTATAATAAGTGTTCACCT 598
consensus_4006#1 ------------------------------------------------------------
consensus_4006#2 ------------------------------------------------------------
consensus_4006#0 GGAATTTCATTAATGCACATTATGATGGTGTAAGTTTTTTCAGTGCGCTGTTTTTTATCC 658
consensus_4006#1 ------------------------------------------------------------
consensus_4006#2 ------------------------------------------------------------
consensus_4006#0 TTACAATATCTTCTACAGTAATAAAGTTA 687
consensus_4006#1 -----------------------------
consensus_4006#2 -----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||