These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4019#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 626 fasta sequence [TCTCATTGTTCATACCTCAGCAGAACATTAAGCCTTTCCCCTCCTCCACTCCATTCACAGCTTCCAGATGGCTCAGGTAAGCAAGTGCAACTCTTGTTTATGGTTCAATTCCCTGATTCCTTCGGCGGTTCACGCCTTCGTGTCGTCGGATGATAATTCTCAGCAGAAGGTGGTGCTGAGGGTTCCAACCATGACCGACGACAAGATTAAGCAGAAAGCCATTGAAGCCGTTGCAGAC-ATCTACGGTATCGATTCCATAGCTGCAGATTTGAAGGACAATAAGATGACCATCATCGGTGAAATGGACA-CAGTGG-CAATTG-CAAAG-AAG-TTAAAGAAGATTGGGAAGATTGACATTGTGTCTGTTGGACCTG-CAAAAGAAGAGAAGAAGGAAGAAAAGAAAGAGGAGAAGAAAGAAGAGAAGAAGGAAGAGAAGAAGGAGGAGAAGAAAGAGGAAAAGAAAGAAGAGAAGAAATGATAAAATTATGAAATATATAACACCATTGCATAGTGTCTCTCCCATCTGCAAGTGAAACAGCCAATACCTTGGACTTTTGATCGATGTTTTATGTGAAATTACTCTGTACCATAATACTGTAAAGAACATATTGGTACACGTAAGTAATATT] [+] EMBL AK120420 [TCTCATTGTTCATACCTCAGCAGAACATTAAGCCTTTCCCCTCCTCCACTCCATTCACAGCTTCCAGATGGCTCAGGTAAGCAAGTGCAACTCTTGTTTATGGTTCAATTCCCTGATTCCTTCGGCGGTTCACGCCTTCGTGTCGTCGGATGATAATTCTCAGCAGAAGGTGGTGCTGAGGGTTCCAACCATGACCGACGACAAGATTAAGCAGAAAGCCATTGAAGCCGTTGCAGAC ATCTACGGTATCGATTCCATAGCTGCAGATTTGAAGGACAATAAGATGACCATCATCGGTGAAATGGACA CAGTGG CAATTG CAAAG AAG TTAAAGAAGATTGGGAAGATTGACATTGTGTCTGTTGGACCTG CAAAAGAAGAGAAGAAGGAAGAAAAGAAAGAGGAGAAGAAAGAAGAGAAGAAGGAAGAGAAGAAGGAGGAGAAGAAAGAGGAAAAGAAAGAAGAGAAGAAATGATAAAATTATGAAATATATAACACCATTGCATAGTGTCTCTCCCATCTGCAAGTGAAACAGCCAATACCTTGGACTTTTGATCGATGTTTTATGTGAAATTACTCTGTACCATAATACTGTAAAGAACATATTGGTACACGTAAGTAATATT] [+] EMBL BI800191 [ AGTCCAACTCTTGTTTATGGTTCAATTCCCTGATTCCTTCGGCGGTTCACGCCTTCGTGTCGTCGGATGATAATTCTCAGCAGAAGGTGGTGCTGAGGGTTCCAACCATGACCGACGACAAGATTAAGCAGAAAGCC TTGAA CC TT CAGACTATCTACGGTATCGATTCCATAGCTGCAGATTTAAAGGAC ATAAGATGACCATCATCGGTGAAATGAACACCAGTGGCCAATTGCCAAAGAAAGTTTAAAGAAGATTGGGAAGATTGACTTTGTGTCTGTTGGACCTGCCAAAAGAAag ] consensusID : consensus_4019#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 414 fasta sequence [AGAGAGACAAGGGGAAAAGACAGTGGCAATTGCAAAGAAGTTAAAGAAGATTGGGAAGATTGACATTGTGTTTGTTGGACCTGCAAAAGAAGAGAAGAAGGAAGAAAAGAAAGAGGAGAAGAAAGAAGAGAAGAAGGAAGAGAAGAAGGAGGAGAAGAAAGAGGAAAAGACAGTGGCAATTGCAAAGAAGTTAAAGAAGATTGGGAAGATTGACATTGTGTTTGTTGGACCTGCAAAAGAAGAGAAGAAGGAAGAAAAGAAAGAGGAGAAGAAAGAAGAGAAGAAGGAAGAGAAGAAGGAGGAGAAGAAAGAGGAAAAGACAGTGGCAATTGCAAAGAAGTTAAAGAAGATTGGGAAGATTGACATTGTGTCTGTTGGACCTGCAAAAGAAGAGAAGAAGGAAAAAAAAAAAAA] [-] EMBL CA761181 [AGAGAGACAAGGGGAAAAGACAGTGGCAATTGCAAAGAAGTTAAAGAAGATTGGGAAGATTGACATTGTGTTTGTTGGACCTGCAAAAGAAGAGAAGAAGGAAGAAAAGAAAGAGGAGAAGAAAGAAGAGAAGAAGGAAGAGAAGAAGGAGGAGAAGAAAGAGGAAAAGACAGTGGCAATTGCAAAGAAGTTAAAGAAGATTGGGAAGATTGACATTGTGTTTGTTGGACCTGCAAAAGAAGAGAAGAAGGAAGAAAAGAAAGAGGAGAAGAAAGAAGAGAAGAAGGAAGAGAAGAAGGAGGAGAAGAAAGAGGAAAAGACAGTGGCAATTGCAAAGAAGTTAAAGAAGATTGGGAAGATTGACATTGTGTCTGTTGGACCTGCAAAAGAAGAGAAGAAGGAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4019#0 TCTCATTGTTCATACCTCAGCAGAACATTAAGCCTTTCCCCTCCTCCACTCCATTCACAG 60 consensus_4019#1 ------------------------------------------------------------ consensus_4019#0 CTTCCAGATGGCTCAGGTAAGCAAGTGCAACTCTTGTTTATGGTTCAATTCCCTGATTCC 120 consensus_4019#1 ------------------------------------------------------------ consensus_4019#0 TTCGGCGGTTCACGCCTTCGTGTCGTCGGATGATAATTCTCAGCAGAAGGTGGTGCTGAG 180 consensus_4019#1 -------------AGAGAGACAAGGGGAAAAGACAGTGGCAATTGCAAAGAAGTTAAAGA 47 * * ** * * * ** * ** consensus_4019#0 GGTTCCAACCATGACCGACGACAAGATTAAGCAGAAAGCCATTGAAGCCGTTGCAGACAT 240 consensus_4019#1 AGATTGGG--AAGATTGACATTGTGTTTGTTGGACCTGCAAAAGAAGA-GAAGAAGGAAG 104 * * * ** *** * ** ** * **** * * ** * consensus_4019#0 CTACGGTATCGATTCCATAGCTGCAGATTTGAAGGACAATAAGATGACCATCATCGGTGA 300 consensus_4019#1 AAAAGAAA--GAGGAGAAGAAAGAAGAGAAGAAGGAAGAGAAGAAGGAGGAGAAGAAAGA 162 * * * ** * * *** ****** * **** * * ** consensus_4019#0 AATGGACACAGTGGCAATTGCAAAGAAGTTAAAGAAGATTGGGAAGATTGACATTGTGTC 360 consensus_4019#1 GGAAAAGACAGTGGCAATTGCAAAGAAGTTAAAGAAGATTGGGAAGATTGACATTGTGTT 222 * **************************************************** consensus_4019#0 TGTTGGACCTGCAAAAGAAGAGAAGAAGGAAGAAAAGAAAGAGGAGAAGAAAGAAGAGAA 420 consensus_4019#1 TGTTGGACCTGCAAAAGAAGAGAAGAAGGAAGAAAAGAAAGAGGAGAAGAAAGAAGAGAA 282 ************************************************************ consensus_4019#0 GAAGGAAGAGAAGAAGGAGGAGAAGAAAGAGGAAAAGAAAGAAGAGAAGAAATGATAAAA 480 consensus_4019#1 GAAGGAAGAGAAGAAGGAGGAGAAGAAAGAGGAAAAGACAGTGGCAATT--GCAAAGAAG 340 ************************************** ** * * * ** consensus_4019#0 TTATGAAATATATAACACCATTGCATAGTGTCTCTCCCATCTGCAAGTGAAACAGCCAAT 540 consensus_4019#1 TTAAAGAAGATTGGGAAGATTGACATTGTGTCTGTTGGACCTGCAAAAGAAGAGAAGAAG 400 *** ** ** * * *** ****** * * ****** *** ** consensus_4019#0 ACCTTGGACTTTTGATCGATGTTTTATGTGAAATTACTCTGTACCATAATACTGTAAAGA 600 consensus_4019#1 GAAAAAAAAAAAAA---------------------------------------------- 414 * consensus_4019#0 ACATATTGGTACACGTAAGTAATATT 626 consensus_4019#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||