These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4022#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 916 fasta sequence [GCTGCAAACGAGAAATGGTCGGTCCATGCTTGCTCAGCATGATCCTGATCTCTTCTGCATTTGCATCCATGGCCAAATAATACACAGCTATTTGTACAGTTGTAGCTGATCTGTACTGTCTGATCGATTTGTATATATCTTTGCATGCGCAGGCCGGCTCGCTGGTGAAGCTGGGTGCGTGGGGCGGCGACCACGGCGGGAAGGAGTACGACGTGACGGTGGCGCCGCAGCGGCTGGAGGGCTTCTGGCTCCGCTACGGCAAGGTCATCGACTGCATCT-CTTCTCCTACCTCGACAAGGACAAGAACCTCCACACCATCGGCCCCTGGGGCGGCCAAGGCGGCCTCTCCGAGTAGACCATCACGTTCGAGCCATCGGAGTACGTGAAGGAGGTGCACGGCTC-GTGGGGCCCATCGGGGACTACACCCACGTCGTCACCTCGCTCAAGCTCGTCACCAGCCAACGCACCATCGGGCCGTTCGGCAACGGCGCCGGCACGCCCTTCGCCGTCCCCGTCCTCAACAACGGCAGCGTCGTCGGCTTCTTCGCCCGCGCGGGGCCCTACCTCGAGTCCATCGGCATCTACGTCCATCCATTTTGAGTTCTGATCCAGGACGAACACGCAGCATCATATCCATCTTTCGATTCGATTTCCAAATTCCAA--TCGA--TCGGTC----CGCGGCATCCCAATTTCAGTAGCTG-T-GGATCTGTGGTTTTCCTTTTTAATTTATATTATTGCTTTCGATTATGATTCATGGAAGGGACTTCTTCGATCGATTGTATTCTTTTGCCGTCTATTAATTTGTCATCTCAAATGCAAGAATATCGATGATTAAGGGAATTAGGGGGAGCTGGCAGGTGCACCAATAAGATTCGAGGACCATTGTACTACCTGTGTATTTATAGAAGAAGTATATTTG] [+] EMBL AK099576 [GCTGCAAACGAGAAATGGTCGGTCCATGCTTGCTCAGCATGATCCTGATCTCTTCTGCATTTGCATCCATGGCCAAATAATACACAGCTATTTGTACAGTTGTAGCTGATCTGTACTGTCTGATCGATTTGTATATATCTTTGCATGCGCAGGCCGGCTCGCTGGTGAAGCTGGGTGCGTGGGGCGGCGACCACGGCGGGAAGGAGTACGACGTGACGGTGGCGCCGCAGCGGCTGGAGGGCTTCTGGCTCCGCTACGGCAAGGTCATCGACTGCATCT CTTCTCCTACCTCGACAAGGACAAGAACCTCCACACCATCGGCCCCTGGGGCGGCCAAGGCGGCCTCTCCGAGTAGACCATCACGTTCGAGCCATCGGAGTACGTGAAGGAGGTGCACGGCTC GTGGGGCCCATCGGGGACTACACCCACGTCGTCACCTCGCTCAAGCTCGTCACCAGCCAACGCACCATCGGGCCGTTCGGCAACGGCGCCGGCACGCCCTTCGCCGTCCCCGTCCTCAACAACGGCAGCGTCGTCGGCTTCTTCGCCCGCGCGGGGCCCTACCTCGAGTCCATCGGCATCTACGTCCATCCATTTTGAGTTCTGATCCAGGACGAACACGCAGCATCATATCCATCTTTCGATTCGATTTCCAAATTCCAA TCGA TCGGTC CGCGGCATCCCAATTTCAGTAGCTG T GGATCTGTGGTTTTCCTTTTTAATTTATATTATTGCTTTCGATTATGATTCATGGAAGGGACTTCTTCGATCGATTGTATTCTTTTGCCGTCTATTAATTTGTCA ] [-] EMBL BI305828 [ AAGGTCATCGACTGCATCTCCTTCTCCTACCTCGACAAGGACAAGACCCTCCACACCGTCGGCCCCTGGGGCGGCCAAGGCGGCGTCTCCGAGGAGACCATCACGTTGGAGCCATCGGAGTACGTGAAGGAGGTGCACGGCTCGGTGGGGCCCATCGGGGACTACACCCACGTCGTCACCTCGCTCAAGCTCGTCACCAACCAGCGCACCATCGGGCCGTTCGGCAACGGCGCCGGCACGCCCTTCGCCGTCCCCGTCCTCAACAACGGCAGCGTCGTCGGCTTCTTCGCCCGCGCGGGGCCTTACCTCGAGTCCATCGGCATCTACGTCCATCCCTTCTGAGTTCTCATCGAGGATGAACACGCAACATCATATCCATCTTTCGATTCGATTTCCAAATTCCAATCTCGATCTCGATCCGCGCGCGGCGTCCCAATTTCAGTAGCTGCTACTCTCTGTGGTTTTCCTTTTTAATTTATATTATTGCTTTCGATTATGATTCATGGAGGGGACTTCTTCGATCAATTGTATTCTGTTGCCGTCTATTAATTTGTCATCTCAAATGCAAGAATATCGATGATTAAGGGAATTAGGGGGAGCTGGCAGGTGCACCAATAAGATTCGAGGACCATTGTACTACCTGTGTATTTATAGAAGAAGTATATTTG] consensusID : consensus_4022#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 630 fasta sequence [TNNNGGAATGGGGNGGNNGANCNGGGGAGAAAAGGAGTTCNNACGTGGGGTTGGTCGTCGCAGTNTTGANGANTTTTTTTCNACTTGANANGANAAGACCTTNANAACNTTGCCCTGGGGNGCCAGGGGGCTTTTCGGGAANACCATAAANTTGGACCATTCGGANAAGNGAGGGGGTGCAGGGTCGGTGGGGCCCATTGGGGGAAAAAAACNAAGTGTCACCTNGTTCAAGTTTGTCACCANCNAAAGGCACCATTGGGCCGTTGGGCAAACGGCGCCGGCAAGCCCTTTCCCCGTCCCCGTCTTCAAACAAACGGGCAGCGTTGTCGGGTTCTTTCGCCCGGCGCGGGCCCTAACTTGGAGTCCATCGGCATTAACGTCCATCCATTTTGAGTTCTGATCCAGGACGAACACGCAGCATCATATCCATCTTTCGATTCGATTTCCAAATTCCAATCGATCGGTCCGCGGCATCCCAATTTCAGTAGCTGTGGATCTGTGGTTTTCCTTTTTAATTTATATTATTGCTTTCGATTATGATTCATGGAAGGGACTTCTTCGATCGATTGTATTCTTTTGCCGTCTATTAATTTGTCATCTGAAATGCAAGAATATCGATAATTAAGGGAA] [-] EMBL BE229081 [TNNNGGAATGGGGNGGNNGANCNGGGGAGAAAAGGAGTTCNNACGTGGGGTTGGTCGTCGCAGTNTTGANGANTTTTTTTCNACTTGANANGANAAGACCTTNANAACNTTGCCCTGGGGNGCCAGGGGGCTTTTCGGGAANACCATAAANTTGGACCATTCGGANAAGNGAGGGGGTGCAGGGTCGGTGGGGCCCATTGGGGGAAAAAAACNAAGTGTCACCTNGTTCAAGTTTGTCACCANCNAAAGGCACCATTGGGCCGTTGGGCAAACGGCGCCGGCAAGCCCTTTCCCCGTCCCCGTCTTCAAACAAACGGGCAGCGTTGTCGGGTTCTTTCGCCCGGCGCGGGCCCTAACTTGGAGTCCATCGGCATTAACGTCCATCCATTTTGAGTTCTGATCCAGGACGAACACGCAGCATCATATCCATCTTTCGATTCGATTTCCAAATTCCAATCGATCGGTCCGCGGCATCCCAATTTCAGTAGCTGTGGATCTGTGGTTTTCCTTTTTAATTTATATTATTGCTTTCGATTATGATTCATGGAAGGGACTTCTTCGATCGATTGTATTCTTTTGCCGTCTATTAATTTGTCATCTGAAATGCAAGAATATCGATAATTAAGGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4022#0 GCTGCAAACGAGAAATGGTCGGTCCATGCTTGCTCAGCATGATCCTGATCTCTTCTGCAT 60 consensus_4022#1 ------------------------------------------------------------ consensus_4022#0 TTGCATCCATGGCCAAATAATACACAGCTATTTGTACAGTTGTAGCTGATCTGTACTGTC 120 consensus_4022#1 ------------------------------------------------------------ consensus_4022#0 TGATCGATTTGTATATATCTTTGCATGCGCAGGCCGGCTCGCTGGTGAAGCTGGGTGCGT 180 consensus_4022#1 ------------------------------------------------------------ consensus_4022#0 GGGGCGGCGACCACGGCGGGAAGGAGTACGACGTGACGGTGGCGCCGCAGCGGCTGGAGG 240 consensus_4022#1 -----------------------TNNNGGAATGGGGNGGNNGANCNGGGGAGA--AAAGG 35 * * * ** * * * * * *** consensus_4022#0 GCTTCTGGCTCCGCTACGGCAAGGTCATCGACTGCATCTCTTCTCCTACCTCGACAAGGA 300 consensus_4022#1 AGTTCNNACGTGGGGTTGGTCGTCGCAGTNTTGANGANTTTTTTTCNACTT-GANANGAN 94 *** * * ** ** * ** * * ** * ** * * consensus_4022#0 CAAGAACCTCCACACCATCGGCCCCTGGGGCGGCCAAGGCGGCCTCTCCGAGTAGACCAT 360 consensus_4022#1 --AAGACCTTNANAACNTTG--CCCTGGGGNG-CCAGGGGG--CTTTTCGGGAANACCAT 147 * **** * * * * * ******** * *** ** * ** * ** * * ***** consensus_4022#0 CACGTTCGAGCCATCGGAGTACGTGAAGGAGGTGCACGGCTCGTGGGGCCCATCGGGGAC 420 consensus_4022#1 AA-ANTTGGACCATTCGGANAAGNGA-GGGGGTGCAGGGTCGGTGGGGCCCATTGGGGGA 205 * * * **** * * * ** ** ****** ** *********** **** consensus_4022#0 TACACCCACGTCGTCACCTCGCTCAAGCTCGTCACCAGCCAACG-CACCATCGGGCCGTT 479 consensus_4022#1 AAAAAACNAAGTGTCACCTNGTTCAAGTTTGTCACCANCNAAAGGCACCATTGGGCCGTT 265 * * * ******* * ***** * ******* * ** * ****** ******** consensus_4022#0 CGGCAA-CGGCGCCGGCACGCCCTT-CGCCGTCCCCGTCCTCAAC--AACGG-CAGCGTC 534 consensus_4022#1 GGGCAAACGGCGCCGGCAAGCCCTTTCCCCGTCCCCGTCTTCAAACAAACGGGCAGCGTT 325 ***** *********** ****** * *********** **** ***** ****** consensus_4022#0 GTCGGCTTCTT-CGCCCG-CGCGGGGCCCTACCTCGAGTCCATCGGCATCTACGTCCATC 592 consensus_4022#1 GTCGGGTTCTTTCGCCCGGCGCGGGCCCTAACTTGGAGTCCATCGGCATTAACGTCCATC 385 ***** ***** ****** ****** ** ** * ************** ********* consensus_4022#0 CATTTTGAGTTCTGATCCAGGACGAACACGCAGCATCATATCCATCTTTCGATTCGATTT 652 consensus_4022#1 CATTTTGAGTTCTGATCCAGGACGAACACGCAGCATCATATCCATCTTTCGATTCGATTT 445 ************************************************************ consensus_4022#0 CCAAATTCCAATCGATCGGTCCGCGGCATCCCAATTTCAGTAGCTGTGGATCTGTGGTTT 712 consensus_4022#1 CCAAATTCCAATCGATCGGTCCGCGGCATCCCAATTTCAGTAGCTGTGGATCTGTGGTTT 505 ************************************************************ consensus_4022#0 TCCTTTTTAATTTATATTATTGCTTTCGATTATGATTCATGGAAGGGACTTCTTCGATCG 772 consensus_4022#1 TCCTTTTTAATTTATATTATTGCTTTCGATTATGATTCATGGAAGGGACTTCTTCGATCG 565 ************************************************************ consensus_4022#0 ATTGTATTCTTTTGCCGTCTATTAATTTGTCATCTCAAATGCAAGAATATCGATGATTAA 832 consensus_4022#1 ATTGTATTCTTTTGCCGTCTATTAATTTGTCATCTGAAATGCAAGAATATCGATAATTAA 625 *********************************** ****************** ***** consensus_4022#0 GGGAATTAGGGGGAGCTGGCAGGTGCACCAATAAGATTCGAGGACCATTGTACTACCTGT 892 consensus_4022#1 GGGAA------------------------------------------------------- 630 ***** consensus_4022#0 GTATTTATAGAAGAAGTATATTTG 916 consensus_4022#1 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||