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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4022#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 916 fasta sequence
[GCTGCAAACGAGAAATGGTCGGTCCATGCTTGCTCAGCATGATCCTGATCTCTTCTGCATTTGCATCCATGGCCAAATAATACACAGCTATTTGTACAGTTGTAGCTGATCTGTACTGTCTGATCGATTTGTATATATCTTTGCATGCGCAGGCCGGCTCGCTGGTGAAGCTGGGTGCGTGGGGCGGCGACCACGGCGGGAAGGAGTACGACGTGACGGTGGCGCCGCAGCGGCTGGAGGGCTTCTGGCTCCGCTACGGCAAGGTCATCGACTGCATCT-CTTCTCCTACCTCGACAAGGACAAGAACCTCCACACCATCGGCCCCTGGGGCGGCCAAGGCGGCCTCTCCGAGTAGACCATCACGTTCGAGCCATCGGAGTACGTGAAGGAGGTGCACGGCTC-GTGGGGCCCATCGGGGACTACACCCACGTCGTCACCTCGCTCAAGCTCGTCACCAGCCAACGCACCATCGGGCCGTTCGGCAACGGCGCCGGCACGCCCTTCGCCGTCCCCGTCCTCAACAACGGCAGCGTCGTCGGCTTCTTCGCCCGCGCGGGGCCCTACCTCGAGTCCATCGGCATCTACGTCCATCCATTTTGAGTTCTGATCCAGGACGAACACGCAGCATCATATCCATCTTTCGATTCGATTTCCAAATTCCAA--TCGA--TCGGTC----CGCGGCATCCCAATTTCAGTAGCTG-T-GGATCTGTGGTTTTCCTTTTTAATTTATATTATTGCTTTCGATTATGATTCATGGAAGGGACTTCTTCGATCGATTGTATTCTTTTGCCGTCTATTAATTTGTCATCTCAAATGCAAGAATATCGATGATTAAGGGAATTAGGGGGAGCTGGCAGGTGCACCAATAAGATTCGAGGACCATTGTACTACCTGTGTATTTATAGAAGAAGTATATTTG]
[+] EMBL AK099576 [GCTGCAAACGAGAAATGGTCGGTCCATGCTTGCTCAGCATGATCCTGATCTCTTCTGCATTTGCATCCATGGCCAAATAATACACAGCTATTTGTACAGTTGTAGCTGATCTGTACTGTCTGATCGATTTGTATATATCTTTGCATGCGCAGGCCGGCTCGCTGGTGAAGCTGGGTGCGTGGGGCGGCGACCACGGCGGGAAGGAGTACGACGTGACGGTGGCGCCGCAGCGGCTGGAGGGCTTCTGGCTCCGCTACGGCAAGGTCATCGACTGCATCT CTTCTCCTACCTCGACAAGGACAAGAACCTCCACACCATCGGCCCCTGGGGCGGCCAAGGCGGCCTCTCCGAGTAGACCATCACGTTCGAGCCATCGGAGTACGTGAAGGAGGTGCACGGCTC GTGGGGCCCATCGGGGACTACACCCACGTCGTCACCTCGCTCAAGCTCGTCACCAGCCAACGCACCATCGGGCCGTTCGGCAACGGCGCCGGCACGCCCTTCGCCGTCCCCGTCCTCAACAACGGCAGCGTCGTCGGCTTCTTCGCCCGCGCGGGGCCCTACCTCGAGTCCATCGGCATCTACGTCCATCCATTTTGAGTTCTGATCCAGGACGAACACGCAGCATCATATCCATCTTTCGATTCGATTTCCAAATTCCAA TCGA TCGGTC CGCGGCATCCCAATTTCAGTAGCTG T GGATCTGTGGTTTTCCTTTTTAATTTATATTATTGCTTTCGATTATGATTCATGGAAGGGACTTCTTCGATCGATTGTATTCTTTTGCCGTCTATTAATTTGTCA ]
[-] EMBL BI305828 [ AAGGTCATCGACTGCATCTCCTTCTCCTACCTCGACAAGGACAAGACCCTCCACACCGTCGGCCCCTGGGGCGGCCAAGGCGGCGTCTCCGAGGAGACCATCACGTTGGAGCCATCGGAGTACGTGAAGGAGGTGCACGGCTCGGTGGGGCCCATCGGGGACTACACCCACGTCGTCACCTCGCTCAAGCTCGTCACCAACCAGCGCACCATCGGGCCGTTCGGCAACGGCGCCGGCACGCCCTTCGCCGTCCCCGTCCTCAACAACGGCAGCGTCGTCGGCTTCTTCGCCCGCGCGGGGCCTTACCTCGAGTCCATCGGCATCTACGTCCATCCCTTCTGAGTTCTCATCGAGGATGAACACGCAACATCATATCCATCTTTCGATTCGATTTCCAAATTCCAATCTCGATCTCGATCCGCGCGCGGCGTCCCAATTTCAGTAGCTGCTACTCTCTGTGGTTTTCCTTTTTAATTTATATTATTGCTTTCGATTATGATTCATGGAGGGGACTTCTTCGATCAATTGTATTCTGTTGCCGTCTATTAATTTGTCATCTCAAATGCAAGAATATCGATGATTAAGGGAATTAGGGGGAGCTGGCAGGTGCACCAATAAGATTCGAGGACCATTGTACTACCTGTGTATTTATAGAAGAAGTATATTTG]
consensusID : consensus_4022#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 630 fasta sequence
[TNNNGGAATGGGGNGGNNGANCNGGGGAGAAAAGGAGTTCNNACGTGGGGTTGGTCGTCGCAGTNTTGANGANTTTTTTTCNACTTGANANGANAAGACCTTNANAACNTTGCCCTGGGGNGCCAGGGGGCTTTTCGGGAANACCATAAANTTGGACCATTCGGANAAGNGAGGGGGTGCAGGGTCGGTGGGGCCCATTGGGGGAAAAAAACNAAGTGTCACCTNGTTCAAGTTTGTCACCANCNAAAGGCACCATTGGGCCGTTGGGCAAACGGCGCCGGCAAGCCCTTTCCCCGTCCCCGTCTTCAAACAAACGGGCAGCGTTGTCGGGTTCTTTCGCCCGGCGCGGGCCCTAACTTGGAGTCCATCGGCATTAACGTCCATCCATTTTGAGTTCTGATCCAGGACGAACACGCAGCATCATATCCATCTTTCGATTCGATTTCCAAATTCCAATCGATCGGTCCGCGGCATCCCAATTTCAGTAGCTGTGGATCTGTGGTTTTCCTTTTTAATTTATATTATTGCTTTCGATTATGATTCATGGAAGGGACTTCTTCGATCGATTGTATTCTTTTGCCGTCTATTAATTTGTCATCTGAAATGCAAGAATATCGATAATTAAGGGAA]
[-] EMBL BE229081 [TNNNGGAATGGGGNGGNNGANCNGGGGAGAAAAGGAGTTCNNACGTGGGGTTGGTCGTCGCAGTNTTGANGANTTTTTTTCNACTTGANANGANAAGACCTTNANAACNTTGCCCTGGGGNGCCAGGGGGCTTTTCGGGAANACCATAAANTTGGACCATTCGGANAAGNGAGGGGGTGCAGGGTCGGTGGGGCCCATTGGGGGAAAAAAACNAAGTGTCACCTNGTTCAAGTTTGTCACCANCNAAAGGCACCATTGGGCCGTTGGGCAAACGGCGCCGGCAAGCCCTTTCCCCGTCCCCGTCTTCAAACAAACGGGCAGCGTTGTCGGGTTCTTTCGCCCGGCGCGGGCCCTAACTTGGAGTCCATCGGCATTAACGTCCATCCATTTTGAGTTCTGATCCAGGACGAACACGCAGCATCATATCCATCTTTCGATTCGATTTCCAAATTCCAATCGATCGGTCCGCGGCATCCCAATTTCAGTAGCTGTGGATCTGTGGTTTTCCTTTTTAATTTATATTATTGCTTTCGATTATGATTCATGGAAGGGACTTCTTCGATCGATTGTATTCTTTTGCCGTCTATTAATTTGTCATCTGAAATGCAAGAATATCGATAATTAAGGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4022#0 GCTGCAAACGAGAAATGGTCGGTCCATGCTTGCTCAGCATGATCCTGATCTCTTCTGCAT 60
consensus_4022#1 ------------------------------------------------------------
consensus_4022#0 TTGCATCCATGGCCAAATAATACACAGCTATTTGTACAGTTGTAGCTGATCTGTACTGTC 120
consensus_4022#1 ------------------------------------------------------------
consensus_4022#0 TGATCGATTTGTATATATCTTTGCATGCGCAGGCCGGCTCGCTGGTGAAGCTGGGTGCGT 180
consensus_4022#1 ------------------------------------------------------------
consensus_4022#0 GGGGCGGCGACCACGGCGGGAAGGAGTACGACGTGACGGTGGCGCCGCAGCGGCTGGAGG 240
consensus_4022#1 -----------------------TNNNGGAATGGGGNGGNNGANCNGGGGAGA--AAAGG 35
* * * ** * * * * * ***
consensus_4022#0 GCTTCTGGCTCCGCTACGGCAAGGTCATCGACTGCATCTCTTCTCCTACCTCGACAAGGA 300
consensus_4022#1 AGTTCNNACGTGGGGTTGGTCGTCGCAGTNTTGANGANTTTTTTTCNACTT-GANANGAN 94
*** * * ** ** * ** * * ** * ** * *
consensus_4022#0 CAAGAACCTCCACACCATCGGCCCCTGGGGCGGCCAAGGCGGCCTCTCCGAGTAGACCAT 360
consensus_4022#1 --AAGACCTTNANAACNTTG--CCCTGGGGNG-CCAGGGGG--CTTTTCGGGAANACCAT 147
* **** * * * * * ******** * *** ** * ** * ** * * *****
consensus_4022#0 CACGTTCGAGCCATCGGAGTACGTGAAGGAGGTGCACGGCTCGTGGGGCCCATCGGGGAC 420
consensus_4022#1 AA-ANTTGGACCATTCGGANAAGNGA-GGGGGTGCAGGGTCGGTGGGGCCCATTGGGGGA 205
* * * **** * * * ** ** ****** ** *********** ****
consensus_4022#0 TACACCCACGTCGTCACCTCGCTCAAGCTCGTCACCAGCCAACG-CACCATCGGGCCGTT 479
consensus_4022#1 AAAAAACNAAGTGTCACCTNGTTCAAGTTTGTCACCANCNAAAGGCACCATTGGGCCGTT 265
* * * ******* * ***** * ******* * ** * ****** ********
consensus_4022#0 CGGCAA-CGGCGCCGGCACGCCCTT-CGCCGTCCCCGTCCTCAAC--AACGG-CAGCGTC 534
consensus_4022#1 GGGCAAACGGCGCCGGCAAGCCCTTTCCCCGTCCCCGTCTTCAAACAAACGGGCAGCGTT 325
***** *********** ****** * *********** **** ***** ******
consensus_4022#0 GTCGGCTTCTT-CGCCCG-CGCGGGGCCCTACCTCGAGTCCATCGGCATCTACGTCCATC 592
consensus_4022#1 GTCGGGTTCTTTCGCCCGGCGCGGGCCCTAACTTGGAGTCCATCGGCATTAACGTCCATC 385
***** ***** ****** ****** ** ** * ************** *********
consensus_4022#0 CATTTTGAGTTCTGATCCAGGACGAACACGCAGCATCATATCCATCTTTCGATTCGATTT 652
consensus_4022#1 CATTTTGAGTTCTGATCCAGGACGAACACGCAGCATCATATCCATCTTTCGATTCGATTT 445
************************************************************
consensus_4022#0 CCAAATTCCAATCGATCGGTCCGCGGCATCCCAATTTCAGTAGCTGTGGATCTGTGGTTT 712
consensus_4022#1 CCAAATTCCAATCGATCGGTCCGCGGCATCCCAATTTCAGTAGCTGTGGATCTGTGGTTT 505
************************************************************
consensus_4022#0 TCCTTTTTAATTTATATTATTGCTTTCGATTATGATTCATGGAAGGGACTTCTTCGATCG 772
consensus_4022#1 TCCTTTTTAATTTATATTATTGCTTTCGATTATGATTCATGGAAGGGACTTCTTCGATCG 565
************************************************************
consensus_4022#0 ATTGTATTCTTTTGCCGTCTATTAATTTGTCATCTCAAATGCAAGAATATCGATGATTAA 832
consensus_4022#1 ATTGTATTCTTTTGCCGTCTATTAATTTGTCATCTGAAATGCAAGAATATCGATAATTAA 625
*********************************** ****************** *****
consensus_4022#0 GGGAATTAGGGGGAGCTGGCAGGTGCACCAATAAGATTCGAGGACCATTGTACTACCTGT 892
consensus_4022#1 GGGAA------------------------------------------------------- 630
*****
consensus_4022#0 GTATTTATAGAAGAAGTATATTTG 916
consensus_4022#1 ------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||