Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4026 cluster # 4026       Sequences # 3       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4026#0 length = 844 sequences # 3  
consensusID : consensus_4026#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 844
fasta sequence 
                              [CAAGCCATGGCCCTTTCTGTAGCGCGCAGAGCACCACCACCACGCTGATCGGCATCATGGCCGAGGCAGACGGCCGGTAGCTAGGCCACGCGCACGCCACGACGGCCCGCACATATGTAAGCGCGCGGCAGTGGTGGAAACTAAACTGGAGAGGCTCGGAGTTTGGAGATCGAGATGGCTGTTCACGTTGTGCTTCTCGCCGTGCCGGCGGCGGCGGCGGCGGGCGGAGGGTTCCTGCAGGCGTTCTTGCAGTACTCGTTCCTGGTGTGGCCGTTCAACCTCGTGCTGCCGCTGGCGCGCCACCTGCCGCGCGTCTGCGTCGCGCTCCGCGGCGCGGCGGAGTTCCTCGCCGGCGAGATGCGGATGTTCCTGAGCGGGCGGCGCAGGGTGCAGCTGCCGCAGCTGTCTGGCTACGGGCGCTCGTCGTCGTTGTCGCCAGGCGAGCGGAGGTCGCGGGAGGAGCTCGTCGCCTACACCATGGTTGCCCTCGTCGGGATCTCCTACTGATCATGGCGCTCTCGGCATTGTCGGGTGATCGAATGCGTCCTCTCCGATTGGTTTCTCGGAATCACTATTGTCACTTTGTCAGTGGGGAAGTGTTCATCATAGATAGGTTAGCTTTGCTGCTTTCTTTATTTTGATCTTGCACATAAGAAATCCTTCTGTTCTGTTCTTGCTGCATTTGTCAGCTGCGGCTCCTAGCTAGCTCCTCCATGACTCTGGATTTTTTTTTAAAAAAAAGCTTGATGAAACGATGTATATTGAAGAACTACGAGAAACTGGAGTCCGCATATTTTGATTGAGTTTAATTAGCATTTCGTCGCCGTCAGANAAAAGATAAAAA]

[+] EMBL AK120461             [CAAGCCATGGCCCTTTCTGTAGCGCGCAGAGCACCACCACCACGCTGATCGGCATCATGGCCGAGGCAGACGGCCGGTAGCTAGGCCACGCGCACGCCACGACGGCCCGCACATATGTAAGCGCGCGGCAGTGGTGGAAACTAAACTGGAGAGGCTCGGAGTTTGGAGATCGAGATGGCTGTTCACGTTGTGCTTCTCGCCGTGCCGGCGGCGGCGGCGGCGGGCGGAGGGTTCCTGCAGGCGTTCTTGCAGTACTCGTTCCTGGTGTGGCCGTTCAACCTCGTGCTGCCGCTGGCGCGCCACCTGCCGCGCGTCTGCGTCGCGCTCCGCGGCGCGGCGGAGTTCCTCGCCGGCGAGATGCGGATGTTCCTGAGCGGGCGGCGCAGGGTGCAGCTGCCGCAGCTGTCTGGCTACGGGCGCTCGTCGTCGTTGTCGCCAGGCGAGCGGAGGTCGCGGGAGGAGCTCGTCGCCTACACCATGGTTGCCCTCGTCGGGATCTCCTACTGATCATGGCGCTCTCGGCATTGTCGGGTGATCGAATGCGTCCTCTCCGATTGGTTTCTCGGAATCACTATTGTCACTTTGTCAGTGGGGAAGTGTTCATCATAGATAGGTTAGCTTTGCTGCTTTCTTTATTTTGATCTTGCACATAAGAAATCCTTCTGTTCTGTTCTTGCTGCATTTGTCAGCTGCGGCTCCTAGCTAGCTCCTCCATGACTCTGGATTTTTTTTTAAAAAAAAGCTTGATGAAACGATGTATATTGAAGAACTACGAGAAACTGGAGTCCGCATATTTTGATT                                           ]
[+] EMBL CA755530             [                     GCGCGCAGAGCACCACCACCACGCTGATCGGCATCATGGCCGAGGCAGACGGCCGGTAGCTAGGCCACGCGCACGCCACGACGGCCCGCACATATGTAAGCGCGCGGCAGTGGTGGAAACTAAACTGGAGAGGCTCGGAGTTTGGAGATCGAGATGGCTGTTCACGTTGTGCTTCTCGCCGTGCCGGCGGCGGCGGCGGCGGGCGGAGGGTTCCTGCAGGCGTTCTTGCAGTACTCGTTCCTGGTGTGGCCGTTCAACCTCGTGCTGCCGCTGGCGCGCCACCTGCCGCGCGTCTGCGTCGCGCTCCGCGGCGCGGCGGAGTTCCTCGCCGGCGAGATGCGGATGTTCCTGAGCGGGCGGCGCAGGGTGCAGCTGCCGCAGCTGTCTGGCTACGGGCGCTCGTCGTCGTTGTCGCCAGGCGAGCGGAGGTCGCGGGAGGAGCTCGTCGCCTACACCATGGTTGCCCTCGTCGGGATCTCCTACTGATCATGGCGCTCTCGGCATTGTCGGGTGATCGAATGCGTCCTCTCCGATTGGTTTCTCGGAATCACTATTGTCACTTTGTCAGTGGGGAAGTGTTCATCATAGATAGGTTAGCTTTGCTGCTTTCTTTATTTTGATCTTGCACATAAGAAATCCTTCTGTTCTGTTCTTGCTGCATTTGTCAGCTGCGGCTCCTAGCTAGCTCCTCCATGACTCTGGATTTTTTTTTAAAAAAAAGCTTGATGAAACGATGTATATTGAAGAACTACGAGAAACTGGAGTCCGCATATTTTGATTGAGTTTAATTAGCATTTCGTCGCCGTCAGANAAAAGATAAAAA]
[+] EMBL CF325570             [                               gACCACCACCACGCTGATCGGCATCATGGCCGAGGCAGACGGCCGGTAGCTAGGCCACGCGCACGCCACGACGGCCCGCACATATGTAAGCGCGCGGCAGTGGTGGAAACTAAACTGGAGAGGCTCGGAGTTTGGAGATCGAGATGGCTGTTCACGTTGTGCTTCTCGCCGTGCCGGCGGCGGCGGCGGCGGGCGGAGGGTTCCTGCAGGCGTTCTTGCAGTACTCGTTCCTGGTGTGGCCGTTCAACCTCGTGCTGCCGCTGGCGCGCCACCTGCCGCGCGTCTGCGTCGCGCTCCGCGGCGCGGCGGAGTTCCTCGCCGGCGAGATGCGGATGTTCCTGAGCGGGCGGCGCAGGGTGCAGCTGCCGCAGCTGTCTGGCTACGGGCGCTCGTCGTCGTTGTCGCCAGGCGAGCGGAGGTCGCGGGAGGAGCTCGTCGCCTACACCATGGTTGCCCTCGTCGGGATCTCCTACTGATCATGGCGCTCTCGGCATTGTCGGGTGATCGAATGCGTCCTCTCCGATTGGTTTCTCGGAATCACTATTGTCA                                                                                                                                                                                                                                                                        ]




>consensus_4026#0
CAAGCCATGGCCCTTTCTGTAGCGCGCAGAGCACCACCACCACGCTGATCGGCATCATGG
CCGAGGCAGACGGCCGGTAGCTAGGCCACGCGCACGCCACGACGGCCCGCACATATGTAA
GCGCGCGGCAGTGGTGGAAACTAAACTGGAGAGGCTCGGAGTTTGGAGATCGAGATGGCT
GTTCACGTTGTGCTTCTCGCCGTGCCGGCGGCGGCGGCGGCGGGCGGAGGGTTCCTGCAG
GCGTTCTTGCAGTACTCGTTCCTGGTGTGGCCGTTCAACCTCGTGCTGCCGCTGGCGCGC
CACCTGCCGCGCGTCTGCGTCGCGCTCCGCGGCGCGGCGGAGTTCCTCGCCGGCGAGATG
CGGATGTTCCTGAGCGGGCGGCGCAGGGTGCAGCTGCCGCAGCTGTCTGGCTACGGGCGC
TCGTCGTCGTTGTCGCCAGGCGAGCGGAGGTCGCGGGAGGAGCTCGTCGCCTACACCATG
GTTGCCCTCGTCGGGATCTCCTACTGATCATGGCGCTCTCGGCATTGTCGGGTGATCGAA
TGCGTCCTCTCCGATTGGTTTCTCGGAATCACTATTGTCACTTTGTCAGTGGGGAAGTGT
TCATCATAGATAGGTTAGCTTTGCTGCTTTCTTTATTTTGATCTTGCACATAAGAAATCC
TTCTGTTCTGTTCTTGCTGCATTTGTCAGCTGCGGCTCCTAGCTAGCTCCTCCATGACTC
TGGATTTTTTTTTAAAAAAAAGCTTGATGAAACGATGTATATTGAAGAACTACGAGAAAC
TGGAGTCCGCATATTTTGATTGAGTTTAATTAGCATTTCGTCGCCGTCAGANAAAAGATA
AAAA

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)