|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4030#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2422 fasta sequence
[CGAGCAGCTGCACCTGTCGGACAACCAGCTCGCGGGGCGCATCCCGGCGGAGCTGAGCAACTGCAGCAGCCTCACGGCGCTCCAGCTCGACAAGAACGGCCTGACCGGCGCCATCCCGCCGCAGCTCGGCGAGCTCAGGGCGCTGCAGGTGCTGTTCCTCTGGGGCAACGCGCTCTCCGGCGCGATACCGCCGTCGCTCGGCAACTGCACCGAGCTGTACGCGCTCGACCTGTCCAGGAACCGCCTCGCCGGCGGCATCCCCGACGAGGTGTTCGCGCTGCAGAAGCTCAGCAAGCTGCTCCTCCTCGGGAACGCGCTCTCCGGGAGGCTCCCGCCGAGCGTCGCCGACTGCTCGTCGCTGGTGCGCCTCCGGCTCGGCGAGAACCAGCTCGCCGGCGAGATACCCAGGGAGATCGGCAAGCTGCCGAACCTGGTGTTCCTGGACCTCTACTCCAACAAGTTCACCGGCGCGCTCCCCGGCGAGCTCGCCAACATCACGGTGCTCGAGCTGCTCGACGTCCACAACAACAGCTTCACGGGTGCCATCCCGCCGCAGTTCGGCGAGCTCATGAACCTGGAGCAGCTTGACCTGAGCATGAACAAGCTCACCGGCGAGATACCGGCGAGCTTCGGCAACTTCAGCTACCTCAACAAGCTCATCCTCAGCGGCAACATGCTCTCCGGGACATTGCCCAAGTCGATTCGCAACCTGCAGAAGCTGACCATGCTGGAGCTGAGCAACAACAGCTTCTCCGGTCCGATACCGCCGGAGATTGGCGCGCTCTCGAGCCTGAGCATTAGCCTTGACCTCAGCTCGAACAGGTTCACCGGCGAGCTGCCGGATGAGATGTCCAGCTTGACGCAGCTGCAGTCGCTCGACCTCTCCAGCAATGGCTTGTATGGCAGCATCTCAGTGTTGAGTGGGCTCACCAGCTTGACATCTCTCAACATTTCGTACAACAATTTCTCCGGCGCGATCCCGGTGACACCGTTCTTCAAGACATTGTCATCGAGCTCCTACATCAACAATCCCAACCTCTGCGAGTCCTACGACGGGCACACTTGTGCATCAGACATGGTTCGCAGGACGGCACTGAAGACCGTCAAGACCGTGATCCTTGTCTGTGCTGTTCTGGGCTCAATCACTCTGTTGCTTGTTGTGGTCTGGATCCTGATCAACAGAAGCAGAACACTCGCGGGCAAGAAGGCGATGAGCATGTCGGTTGCGGGTGGCGATGACTTCTCGCACCCGTGGACGTTCACGCCGTTCCAGAAGCTGAACTTCTGCGTCGATAACATCTTGGAGTGCCTGAGAGATGAGAATGTGATCGGCAAAGGTTGCTCAGGTGTTGTGTACAGAGCTGAGATGCCGAATGGGGAGATCATCGCCGTGAAGAAGCTGTGGAAGACATCGAAGGAGGAGCCAATCGACGCGTTCGCTGCTGAGATTCAGATATTGGGGCACATCAGGCACCGGAACATCGTCAAGCTGCTTGGTTACTGCTCAAACAAGTATGTTAAGCTCTTGCTCTACAACTACATCCCCAATGGCAATCTGCAACAGCTCCTGAAGGATAACAGGAGCCTGGACTGGGATACCCGGTACAAGATCGCCGTCGGCGCAGCACAAGGGCTGGCCTATCTGCACCATGATTGCGTCCCGGCGATACTCCACCGCGATGTCAAGTGCAATAATATACTGCTTGATACGAAGTATGAGGCATACTTGGCTGACTTTGGGCTGGCCAAGCTGATGAACTCCCCCAACTATCATCATGCTATGTCACGCATCGCCGGTTCTTATGGATACATTGCTCCAGAGTATGGCTACACCACGAAGATCACCGAGAAGAGCGACGTGTACAGCTACGGGGTGGTGCTCCTGGAGATCCTGAGCGGGCGGAGCGCGGTGGAGACGGTGGTGGGCGACTCCCTCCACATCGTGGAGTGGGCGAAGAAGAAGATGGGGAGCTACGAGCCAGCGGTGAACATCCTGGACCCGAAGCTGCGCGGCATGCCGGACCAGCTGGTCCAGGAGATGCTGCAGACGCTGGGGATCGCCATCTTCTGCGTGAACCCGGCGCCCGCGGAGCGGCCCACCATGAAGGAGGTGGTGGCCTTCCTCAAGGAGGTGAAGTGCTCTCCCGAGGAGTGGGGGAAGATCTCCCAGCAGCCGCTCATCAAGCCCGGGAGCCAGCAAGGTTGACATGAACATCAAGAACATGGAACATGAACATTGCTGCTGGTGTAGCAGTTGATTCAGTGGCTCAGCAAGGGGTTCAAGGAGTAGGATTTTGATAAGATGCAGCCTAGCTTAGCTTGGGTTAGGGGGGTGGAAAAAAAATTTCTTGTACAGCTCCAAATGGCGTTGCGTTGCAGCTCATTTTGGTGAACTTTGAATGGGGAAAAATTCCGCGGTTAT]
[+] EMBL AK101039 [CGAGCAGCTGCACCTGTCGGACAACCAGCTCGCGGGGCGCATCCCGGCGGAGCTGAGCAACTGCAGCAGCCTCACGGCGCTCCAGCTCGACAAGAACGGCCTGACCGGCGCCATCCCGCCGCAGCTCGGCGAGCTCAGGGCGCTGCAGGTGCTGTTCCTCTGGGGCAACGCGCTCTCCGGCGCGATACCGCCGTCGCTCGGCAACTGCACCGAGCTGTACGCGCTCGACCTGTCCAGGAACCGCCTCGCCGGCGGCATCCCCGACGAGGTGTTCGCGCTGCAGAAGCTCAGCAAGCTGCTCCTCCTCGGGAACGCGCTCTCCGGGAGGCTCCCGCCGAGCGTCGCCGACTGCTCGTCGCTGGTGCGCCTCCGGCTCGGCGAGAACCAGCTCGCCGGCGAGATACCCAGGGAGATCGGCAAGCTGCCGAACCTGGTGTTCCTGGACCTCTACTCCAACAAGTTCACCGGCGCGCTCCCCGGCGAGCTCGCCAACATCACGGTGCTCGAGCTGCTCGACGTCCACAACAACAGCTTCACGGGTGCCATCCCGCCGCAGTTCGGCGAGCTCATGAACCTGGAGCAGCTTGACCTGAGCATGAACAAGCTCACCGGCGAGATACCGGCGAGCTTCGGCAACTTCAGCTACCTCAACAAGCTCATCCTCAGCGGCAACATGCTCTCCGGGACATTGCCCAAGTCGATTCGCAACCTGCAGAAGCTGACCATGCTGGAGCTGAGCAACAACAGCTTCTCCGGTCCGATACCGCCGGAGATTGGCGCGCTCTCGAGCCTGAGCATTAGCCTTGACCTCAGCTCGAACAGGTTCACCGGCGAGCTGCCGGATGAGATGTCCAGCTTGACGCAGCTGCAGTCGCTCGACCTCTCCAGCAATGGCTTGTATGGCAGCATCTCAGTGTTGAGTGGGCTCACCAGCTTGACATCTCTCAACATTTCGTACAACAATTTCTCCGGCGCGATCCCGGTGACACCGTTCTTCAAGACATTGTCATCGAGCTCCTACATCAACAATCCCAACCTCTGCGAGTCCTACGACGGGCACACTTGTGCATCAGACATGGTTCGCAGGACGGCACTGAAGACCGTCAAGACCGTGATCCTTGTCTGTGCTGTTCTGGGCTCAATCACTCTGTTGCTTGTTGTGGTCTGGATCCTGATCAACAGAAGCAGAACACTCGCGGGCAAGAAGGCGATGAGCATGTCGGTTGCGGGTGGCGATGACTTCTCGCACCCGTGGACGTTCACGCCGTTCCAGAAGCTGAACTTCTGCGTCGATAACATCTTGGAGTGCCTGAGAGATGAGAATGTGATCGGCAAAGGTTGCTCAGGTGTTGTGTACAGAGCTGAGATGCCGAATGGGGAGATCATCGCCGTGAAGAAGCTGTGGAAGACATCGAAGGAGGAGCCAATCGACGCGTTCGCTGCTGAGATTCAGATATTGGGGCACATCAGGCACCGGAACATCGTCAAGCTGCTTGGTTACTGCTCAAACAAGTATGTTAAGCTCTTGCTCTACAACTACATCCCCAATGGCAATCTGCAACAGCTCCTGAAGGATAACAGGAGCCTGGACTGGGATACCCGGTACAAGATCGCCGTCGGCGCAGCACAAGGGCTGGCCTATCTGCACCATGATTGCGTCCCGGCGATACTCCACCGCGATGTCAAGTGCAATAATATACTGCTTGATACGAAGTATGAGGCATACTTGGCTGACTTTGGGCTGGCCAAGCTGATGAACTCCCCCAACTATCATCATGCTATGTCACGCATCGCCGGTTCTTATGGATACATTGCTCCAGAGTATGGCTACACCACGAAGATCACCGAGAAGAGCGACGTGTACAGCTACGGGGTGGTGCTCCTGGAGATCCTGAGCGGGCGGAGCGCGGTGGAGACGGTGGTGGGCGACTCCCTCCACATCGTGGAGTGGGCGAAGAAGAAGATGGGGAGCTACGAGCCAGCGGTGAACATCCTGGACCCGAAGCTGCGCGGCATGCCGGACCAGCTGGTCCAGGAGATGCTGCAGACGCTGGGGATCGCCATCTTCTGCGTGAACCCGGCGCCCGCGGAGCGGCCCACCATGAAGGAGGTGGTGGCCTTCCTCAAGGAGGTGAAGTGCTCTCCCGAGGAGTGGGGGAAGATCTCCCAGCAGCCGCTCATCAAGCCCGGGAGCCAGCAAGGTTGACATGAACATCAAGAACATGGAACATGAACATTGCTGCTGGTGTAGCAGTTGATTCAGTGGCTCAGCAAGGGGTTCAAGGAGTAGGATTTTGATAAGATGCAGCCTAGCTTAGCTTGGGTTAGGGGGGTGGAAAAAAAATTTCTTGTACAGCTCCAAATGGCGTTGCGTTGCAGCTCATTTTGGTGAACTTTGAATGGGGAAAAATTCCGCGGTTAT]
[+] EMBL CA756789 [ ATTCGCAACCTGCAGAAGCTGACCATGCTGGAGCTGAGCAACAACAGCTTCTCCGGTCCGATACCGCCGGAGATTGGCGCGCTCTCGAGCCTGAGCATTAGCCTTGACCTCAGCTCGAACAGGTTCACCGGCGAGCTGCCGGATGAGATGTCCAGCTTGACGCAGCTGCAGTCGCTCGACCTCTCCAGCAATGGCTTGTATGGCAGCATCTCAGTGTTGAGTGGGCTCACCAGCTT ]
consensusID : consensus_4030#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 548 fasta sequence
[CTGGCCCAAGATTATGTTGATATGCTTAAAACATCCAAGAAATTTATCCTGACATACATTTCCTCATTTTCAGAGTATGGCTACACCACGAAGATCACCGAGAAGAGCGACGTGTACAGCTACGGGGTGGTGCTCCTGGAGATCCTGAGCGGGCGGAGCGCGGTGGAGGCGGTGGTGGGCGACTCCCTCCACATCGTGGAGTGGGCGAAGAAGAAGATGGGGAGCTACGAGCCAGCGGTGAACATCCTGGACCCGAAGCTGCGCGGCATGCCGGACCAGCTGGTCCAGGAGATGCTGCAGACGCTGGGGATCGCCATCTTCTGCGTGAACCCGGCGCCCGCGGAGCGGCCCACCATGAAGGAGGTGGTGGCCTTCCTCAAGGAGGTGAAGTGCTCTCCCGAGGAGTGGGGGAAGATCTCCCAGCAGCCGCTCATCAAGCCCGGGAGCCAGCAAGGTTGACATGAACATCAAGAACATGGAACATGAACATTGCTGCTGGTGTAGCAGTTGATTCAGTGGCTCAGCAAGGGGTTCAAGGAGTAGGATTT]
[-] EMBL AK062501 [CTGGCCCAAGATTATGTTGATATGCTTAAAACATCCAAGAAATTTATCCTGACATACATTTCCTCATTTTCAGAGTATGGCTACACCACGAAGATCACCGAGAAGAGCGACGTGTACAGCTACGGGGTGGTGCTCCTGGAGATCCTGAGCGGGCGGAGCGCGGTGGAGGCGGTGGTGGGCGACTCCCTCCACATCGTGGAGTGGGCGAAGAAGAAGATGGGGAGCTACGAGCCAGCGGTGAACATCCTGGACCCGAAGCTGCGCGGCATGCCGGACCAGCTGGTCCAGGAGATGCTGCAGACGCTGGGGATCGCCATCTTCTGCGTGAACCCGGCGCCCGCGGAGCGGCCCACCATGAAGGAGGTGGTGGCCTTCCTCAAGGAGGTGAAGTGCTCTCCCGAGGAGTGGGGGAAGATCTCCCAGCAGCCGCTCATCAAGCCCGGGAGCCAGCAAGGTTGACATGAACATCAAGAACATGGAACATGAACATTGCTGCTGGTGTAGCAGTTGATTCAGTGGCTCAGCAAGGGGTTCAAGGAGTAGGATTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4030#0 CGAGCAGCTGCACCTGTCGGACAACCAGCTCGCGGGGCGCATCCCGGCGGAGCTGAGCAA 60
consensus_4030#1 ------------------------------------------------------------
consensus_4030#0 CTGCAGCAGCCTCACGGCGCTCCAGCTCGACAAGAACGGCCTGACCGGCGCCATCCCGCC 120
consensus_4030#1 ------------------------------------------------------------
consensus_4030#0 GCAGCTCGGCGAGCTCAGGGCGCTGCAGGTGCTGTTCCTCTGGGGCAACGCGCTCTCCGG 180
consensus_4030#1 ------------------------------------------------------------
consensus_4030#0 CGCGATACCGCCGTCGCTCGGCAACTGCACCGAGCTGTACGCGCTCGACCTGTCCAGGAA 240
consensus_4030#1 ------------------------------------------------------------
consensus_4030#0 CCGCCTCGCCGGCGGCATCCCCGACGAGGTGTTCGCGCTGCAGAAGCTCAGCAAGCTGCT 300
consensus_4030#1 ------------------------------------------------------------
consensus_4030#0 CCTCCTCGGGAACGCGCTCTCCGGGAGGCTCCCGCCGAGCGTCGCCGACTGCTCGTCGCT 360
consensus_4030#1 ------------------------------------------------------------
consensus_4030#0 GGTGCGCCTCCGGCTCGGCGAGAACCAGCTCGCCGGCGAGATACCCAGGGAGATCGGCAA 420
consensus_4030#1 ------------------------------------------------------------
consensus_4030#0 GCTGCCGAACCTGGTGTTCCTGGACCTCTACTCCAACAAGTTCACCGGCGCGCTCCCCGG 480
consensus_4030#1 ------------------------------------------------------------
consensus_4030#0 CGAGCTCGCCAACATCACGGTGCTCGAGCTGCTCGACGTCCACAACAACAGCTTCACGGG 540
consensus_4030#1 ------------------------------------------------------------
consensus_4030#0 TGCCATCCCGCCGCAGTTCGGCGAGCTCATGAACCTGGAGCAGCTTGACCTGAGCATGAA 600
consensus_4030#1 ------------------------------------------------------------
consensus_4030#0 CAAGCTCACCGGCGAGATACCGGCGAGCTTCGGCAACTTCAGCTACCTCAACAAGCTCAT 660
consensus_4030#1 ------------------------------------------------------------
consensus_4030#0 CCTCAGCGGCAACATGCTCTCCGGGACATTGCCCAAGTCGATTCGCAACCTGCAGAAGCT 720
consensus_4030#1 ------------------------------------------------------------
consensus_4030#0 GACCATGCTGGAGCTGAGCAACAACAGCTTCTCCGGTCCGATACCGCCGGAGATTGGCGC 780
consensus_4030#1 ------------------------------------------------------------
consensus_4030#0 GCTCTCGAGCCTGAGCATTAGCCTTGACCTCAGCTCGAACAGGTTCACCGGCGAGCTGCC 840
consensus_4030#1 ------------------------------------------------------------
consensus_4030#0 GGATGAGATGTCCAGCTTGACGCAGCTGCAGTCGCTCGACCTCTCCAGCAATGGCTTGTA 900
consensus_4030#1 ------------------------------------------------------------
consensus_4030#0 TGGCAGCATCTCAGTGTTGAGTGGGCTCACCAGCTTGACATCTCTCAACATTTCGTACAA 960
consensus_4030#1 ------------------------------------------------------------
consensus_4030#0 CAATTTCTCCGGCGCGATCCCGGTGACACCGTTCTTCAAGACATTGTCATCGAGCTCCTA 1020
consensus_4030#1 ------------------------------------------------------------
consensus_4030#0 CATCAACAATCCCAACCTCTGCGAGTCCTACGACGGGCACACTTGTGCATCAGACATGGT 1080
consensus_4030#1 ------------------------------------------------------------
consensus_4030#0 TCGCAGGACGGCACTGAAGACCGTCAAGACCGTGATCCTTGTCTGTGCTGTTCTGGGCTC 1140
consensus_4030#1 ------------------------------------------------------------
consensus_4030#0 AATCACTCTGTTGCTTGTTGTGGTCTGGATCCTGATCAACAGAAGCAGAACACTCGCGGG 1200
consensus_4030#1 ------------------------------------------------------------
consensus_4030#0 CAAGAAGGCGATGAGCATGTCGGTTGCGGGTGGCGATGACTTCTCGCACCCGTGGACGTT 1260
consensus_4030#1 ------------------------------------------------------------
consensus_4030#0 CACGCCGTTCCAGAAGCTGAACTTCTGCGTCGATAACATCTTGGAGTGCCTGAGAGATGA 1320
consensus_4030#1 ------------------------------------------------------------
consensus_4030#0 GAATGTGATCGGCAAAGGTTGCTCAGGTGTTGTGTACAGAGCTGAGATGCCGAATGGGGA 1380
consensus_4030#1 ------------------------------------------------------------
consensus_4030#0 GATCATCGCCGTGAAGAAGCTGTGGAAGACATCGAAGGAGGAGCCAATCGACGCGTTCGC 1440
consensus_4030#1 ------------------------------------------------------------
consensus_4030#0 TGCTGAGATTCAGATATTGGGGCACATCAGGCACCGGAACATCGTCAAGCTGCTTGGTTA 1500
consensus_4030#1 ------------------------------------------------------------
consensus_4030#0 CTGCTCAAACAAGTATGTTAAGCTCTTGCTCTACAACTACATCCCCAATGGCAATCTGCA 1560
consensus_4030#1 ------------------------------------------------------------
consensus_4030#0 ACAGCTCCTGAAGGATAACAGGAGCCTGGACTGGGATACCCGGTACAAGATCGCCGTCGG 1620
consensus_4030#1 ------------------------------------------------------------
consensus_4030#0 CGCAGCACAAGGGCTGGCCTATCTGCACCATGATTGCGTCCCGGCGATACTCCACCGCGA 1680
consensus_4030#1 ------------------------------------------------------------
consensus_4030#0 TGTCAAGTGCAATAATATACTGCTTGATACGAAGTATGAGGCATACTTGGCTGACTTTGG 1740
consensus_4030#1 ------------------------------------------------------------
consensus_4030#0 GCTGGCCAAGCTGATGAACTCCCCCAACTATCATCATGCTATGTCACGCATCGCCGGTTC 1800
consensus_4030#1 -CTGGCCCAA--GATTATGTTGATATGCTTAAAACAT-CCAAGAAATTTATC-CTGACAT 55
****** * *** * * ** * *** * * * * *** * *
consensus_4030#0 TTATGGATACATTGCTCCAGAGTATGGCTACACCACGAAGATCACCGAGAAGAGCGACGT 1860
consensus_4030#1 ACATTTCCTCATT--TTCAGAGTATGGCTACACCACGAAGATCACCGAGAAGAGCGACGT 113
** **** * *******************************************
consensus_4030#0 GTACAGCTACGGGGTGGTGCTCCTGGAGATCCTGAGCGGGCGGAGCGCGGTGGAGACGGT 1920
consensus_4030#1 GTACAGCTACGGGGTGGTGCTCCTGGAGATCCTGAGCGGGCGGAGCGCGGTGGAGGCGGT 173
******************************************************* ****
consensus_4030#0 GGTGGGCGACTCCCTCCACATCGTGGAGTGGGCGAAGAAGAAGATGGGGAGCTACGAGCC 1980
consensus_4030#1 GGTGGGCGACTCCCTCCACATCGTGGAGTGGGCGAAGAAGAAGATGGGGAGCTACGAGCC 233
************************************************************
consensus_4030#0 AGCGGTGAACATCCTGGACCCGAAGCTGCGCGGCATGCCGGACCAGCTGGTCCAGGAGAT 2040
consensus_4030#1 AGCGGTGAACATCCTGGACCCGAAGCTGCGCGGCATGCCGGACCAGCTGGTCCAGGAGAT 293
************************************************************
consensus_4030#0 GCTGCAGACGCTGGGGATCGCCATCTTCTGCGTGAACCCGGCGCCCGCGGAGCGGCCCAC 2100
consensus_4030#1 GCTGCAGACGCTGGGGATCGCCATCTTCTGCGTGAACCCGGCGCCCGCGGAGCGGCCCAC 353
************************************************************
consensus_4030#0 CATGAAGGAGGTGGTGGCCTTCCTCAAGGAGGTGAAGTGCTCTCCCGAGGAGTGGGGGAA 2160
consensus_4030#1 CATGAAGGAGGTGGTGGCCTTCCTCAAGGAGGTGAAGTGCTCTCCCGAGGAGTGGGGGAA 413
************************************************************
consensus_4030#0 GATCTCCCAGCAGCCGCTCATCAAGCCCGGGAGCCAGCAAGGTTGACATGAACATCAAGA 2220
consensus_4030#1 GATCTCCCAGCAGCCGCTCATCAAGCCCGGGAGCCAGCAAGGTTGACATGAACATCAAGA 473
************************************************************
consensus_4030#0 ACATGGAACATGAACATTGCTGCTGGTGTAGCAGTTGATTCAGTGGCTCAGCAAGGGGTT 2280
consensus_4030#1 ACATGGAACATGAACATTGCTGCTGGTGTAGCAGTTGATTCAGTGGCTCAGCAAGGGGTT 533
************************************************************
consensus_4030#0 CAAGGAGTAGGATTTTGATAAGATGCAGCCTAGCTTAGCTTGGGTTAGGGGGGTGGAAAA 2340
consensus_4030#1 CAAGGAGTAGGATTT--------------------------------------------- 548
***************
consensus_4030#0 AAAATTTCTTGTACAGCTCCAAATGGCGTTGCGTTGCAGCTCATTTTGGTGAACTTTGAA 2400
consensus_4030#1 ------------------------------------------------------------
consensus_4030#0 TGGGGAAAAATTCCGCGGTTAT 2422
consensus_4030#1 ----------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||