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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4035#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1142 fasta sequence
[CGCCGCCCGCCGCCGCGTCATCTCTTCTCTTCTGTTAAACCCCCTCCGCCACCGTCGCTGCCGCCGCCGCCGCCTCCGGAGCCCGAGACGATGTCGCGCCTCGGCCGCTACGGCCCACCGGCGGTCCGCGACTCCTACTCCCTCCTCGTCCTCAACGTCTCCTTCCGCACGACGGCCGACGACCTCCTCGCGCTCTTCGACCGCTGCGGCGAGGTCCTCGACATCCGCATCCCCCGCGACCGCAGGACTGGGGATTCGAGAGGGTTCGCGTTCGTGAGGTACAAGTACGAGGACGAGGCGCAGAAGGCCGTCGATAAGCTCGACGGGAGGACGGTGGATGGAGGGATATCATGGTGCAGTTCGCCAAGTACGGCCCAAATGCTGAAAGAATTCATAAGGGGAGGATTGTAGAAGAGATTTCGAAGCCAAGAGGCCGATCCAGAAGTCCTAGTCCAAAACGGAGGTATCGTGCTGACTACCGAGACAGGGGCTACCGTGATGACTATCGGGACAGACA-CTATCGTGATGACTATCAGGACAGGGAGTATAGGAGAAGCCGAAGCATAGAGAGGTATGAACGTGAGAGGTATCAAGAAAAAGGCTATCGTCGCAGGAGCCGGAGCATTAGCCCTGATTATGACAGGAGGCATCGCAAGAATGGGCCCAGGGATGAACGTTCTCCACGCTCTCGAAGCCCTTTGACCTAGCTGAATGCCCTACACAATATATCATAGATAGCTTGAGGATGAATAGACCGGAGCCTTGTCTGCTTGCTTAGGACGGATACTGATAATGGTGTAGTGTTCAACATGGCTGCATTTGAGCATCCAAGGCTGCTTCCTTGTTAACAAGACAGCACCTTTTGAGAACAATGTAGATTTCTGTTATTTTTTGTATCTACTTTATTTCTTATATCCATGTCAGTGCTATTTTTTTCCCTCAATTGAGTGCTTATTATAGACTGTAATTTGCATGATGGAGCGAAGAGGTGTTGGTTGATAATTGCTCCGTATGCAAGTTGCTGTCATGATCTTGCGGTTGACGGACCATGTTGATGCTAAACACCTTGATGATGATTTTGGTGATTCTGAGGCTGATAATTTTGCTGCCCGATTTCATCCTTTCCTGTAAAAAAAAAAAAA]
[+] EMBL AK073057 [CGCCGCCCGCCGCCGCGTCATCTCTTCTCTTCTGTTAAACCCCCTCCGCCACCGTCGCTGCCGCCGCCGCCGCCTCCGGAGCCCGAGACGATGTCGCGCCTCGGCCGCTACGGCCCACCGGCGGTCCGCGACTCCTACTCCCTCCTCGTCCTCAACGTCTCCTTCCGCACGACGGCCGACGACCTCCTCGCGCTCTTCGACCGCTGCGGCGAGGTCCTCGACATCCGCATCCCCCGCGACCGCAGGACTGGGGATTCGAGAGGGTTCGCGTTCGTGAGGTACAAGTACGAGGACGAGGCGCAGAAGGCCGTCGATAAGCTCGACGGGAGGACGGTGGATGGAGGGATATCATGGTGCAGTTCGCCAAGTACGGCCCAAATGCTGAAAGAATTCATAAGGGGAGGATTGTAGAAGAGATTTCGAAGCCAAGAGGCCGATCCAGAAGTCCTAGTCCAAAACGGAGGTATCGTGCTGACTACCGAGACAGGGGCTACCGTGATGACTATCGGGACAGACA CTATCGTGATGACTATCAGGACAGGGAGTATAGGAGAAGCCGAAGCATAGAGAGGTATGAACGTGAGAGGTATCAAGAAAAAGGCTATCGTCGCAGGAGCCGGAGCATTAGCCCTGATTATGACAGGAGGCATCGCAAGAATGGGCCCAGGGATGAACGTTCTCCACGCTCTCGAAGCCCTTTGACCTAGCTGAATGCCCTACACAATATATCATAGATAGCTTGAGGATGAATAGACCGGAGCCTTGTCTGCTTGCTTAGGACGGATACTGATAATGGTGTAGTGTTCAACATGGCTGCATTTGAGCATCCAAGGCTGCTTCCTTGTTAACAAGACAGCACCTTTTGAGAACAATGTAGATTTCTGTTATTTTTTGTATCTACTTTATTTCTTATATCCATGTCAGTGCTATTTTTTTCCCTCAATTGAGTGCTTATTATAGACTGTAATTTGCATGATGGAGCGAAGAGGTGTTGGTTGATAATTGCTCCGTATGCAAGTTGCTGTCATGATCTTGCGGTTGACGGACCATGTTGATGCTAAACACCTTGATGATGATTTTGGTG ]
[-] EMBL CA761640 [ ACCGAGACAGGGGCTACCGTGATGACTATCGGGACAGACACCTATCGTGATGACTATCAGGACAGGGAGTATAGGAGAAGCCGAAGCATAGAGAGGTATGAACGTGAGAGGTATCAAGAAAAAGGCTATCGTCGCAGGAGCCGGAGCATTAGCCCTGATTATGACAGGAGGCATCGCAAGAATGGGCCCAGGGATGAACATTCTCCACGTTCTCGAAGCCCTTTGACCTAGCTGAATGCCCTACACAATATATCATAGATAGCTTGAGGATGAATAGACCGGAGCCTTGTCTGCTTGCTTAGGACGAATACTGATAATGGTGTAGTGTTCAACATGTCTGCATTTGAGCATCCAAGGCTGCTTCCTTGTTAACAAGACAGCACCTTTTGAGAACAATGTAGATTTCTGTTATTTTTTGTATCTACTTTATTTCTTATATCCATGTCAGTGCTA TTTTTTCCCTCAATTGAGTGCTTATTATAGGCTGTAATTTGCATGATGGAGCGAAGAGGTGTTGGTTGATAATTGCTCCGTATGCAAGTTGCTGTCATGATCTTGCGGTTGACGGACCATGTTGATGCTAAACACCTTGATGATGATTTTGGTGATTCTGAGGCTGATAATTTTGCTGCCCGATTTCATCCTTTCCTGTAAAAAAAAAAAAA]
consensusID : consensus_4035#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 961 fasta sequence
[AACCATATGCCTAATAATTTGATTTAGTTGCCAGTCTTATCTTATGGTGTCTTTTCTCAGCTTTTGGTCATTTCTCATTGACAGCTTTTACACTCTTTTTTTCTTTTTCTTTTTCTCTCTCTTTTTTTTGGTGGGATAGAACTTTTATAATTGGGCCCTGCTTTACCAAACAAAAATAGTGTAATGAAAATTTGGGTGCTCTGCAACATACCATATCTGGTCAAGAAGTACCATTTCAGTCTTCAAAGCAATACTGACATCTTTTACACTAAATTTAGCATGGGTACTTTTTTTCTGCCAGAAAGAAAATATGTTGTAGGAAATTATCGGTTACAATTCTACACAAGAATGTGCATGTATGAAACACTCAGAAGTCAAAACGATTTCACACATTACATTTGCCTTTCTGTTTGTGTTTGCAGTCATAAGGGGAGGATTGTAGAAGAGATTTCGAAGCCAAGAGGCCGATCCAGAAGTCCTAGTCCAAAACGGAGGTATCGTGCTGACTACCGAGACAGGGGCTACCGTGATGACTATCGGGACAGACACTATCGTGATGACTATCAGGACAGGGAGTATAGGAGAAGCCGAAGCATAGAGAGGTATGAACGTGAGAGGTATCAAGAAAAAGGCTATCGTCGCAGGAGCCGGAGCATTAGCCCTGATTATGACAGGAGGCATCGCAAGAATGGGCCCAGGGATGAACGTTCTCCACGCTCTCGAAGCCCTTTGACCTAGCTGAATGCCCTACACAATATATCATAGATAGCTTGAGGATGAATAGACCGGAGCCTTGTCTGCTTGCTTAGGACGAATACTGATAATGGTGTAGTGTTCAACATGGCTGCATTTGAGCATCCAAGGCTGCTTCCTTGTTAACAAGACAGCACCTTTTGAGAACAATGTAGATTTCTGTTATTTTTTGTATCTACTTTATTTCTTATATCCATGTCAGTGCTAT]
[+] EMBL AK062658 [AACCATATGCCTAATAATTTGATTTAGTTGCCAGTCTTATCTTATGGTGTCTTTTCTCAGCTTTTGGTCATTTCTCATTGACAGCTTTTACACTCTTTTTTTCTTTTTCTTTTTCTCTCTCTTTTTTTTGGTGGGATAGAACTTTTATAATTGGGCCCTGCTTTACCAAACAAAAATAGTGTAATGAAAATTTGGGTGCTCTGCAACATACCATATCTGGTCAAGAAGTACCATTTCAGTCTTCAAAGCAATACTGACATCTTTTACACTAAATTTAGCATGGGTACTTTTTTTCTGCCAGAAAGAAAATATGTTGTAGGAAATTATCGGTTACAATTCTACACAAGAATGTGCATGTATGAAACACTCAGAAGTCAAAACGATTTCACACATTACATTTGCCTTTCTGTTTGTGTTTGCAGTCATAAGGGGAGGATTGTAGAAGAGATTTCGAAGCCAAGAGGCCGATCCAGAAGTCCTAGTCCAAAACGGAGGTATCGTGCTGACTACCGAGACAGGGGCTACCGTGATGACTATCGGGACAGACACTATCGTGATGACTATCAGGACAGGGAGTATAGGAGAAGCCGAAGCATAGAGAGGTATGAACGTGAGAGGTATCAAGAAAAAGGCTATCGTCGCAGGAGCCGGAGCATTAGCCCTGATTATGACAGGAGGCATCGCAAGAATGGGCCCAGGGATGAACGTTCTCCACGCTCTCGAAGCCCTTTGACCTAGCTGAATGCCCTACACAATATATCATAGATAGCTTGAGGATGAATAGACCGGAGCCTTGTCTGCTTGCTTAGGACGAATACTGATAATGGTGTAGTGTTCAACATGGCTGCATTTGAGCATCCAAGGCTGCTTCCTTGTTAACAAGACAGCACCTTTTGAGAACAATGTAGATTTCTGTTATTTTTTGTATCTACTTTATTTCTTATATCCATGTCAGTGCTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4035#0 ------------CGCCGCCCGCCGCCGCGTCATCTCTTCTCTTCTGTTAAACCCCCTCCG 48
consensus_4035#1 AACCATATGCCTAATAATTTGATTTAGTTGCCAGTCTTATCTTATGGTGTCTTTTCTCAG 60
* * * **** **** ** * *** *
consensus_4035#0 CCACCGTCGCTGCCGCCGCCGCCGCCTCCGGAGCCCGAGACGATGTCGCGCCTCGGCCGC 108
consensus_4035#1 CTTTTGGTCATTTCTCATTGACAGCTTTTACACTCTTT--TTTTCTTTTTCTTTTTCTCT 118
* * * * * * ** * * * * * * * *
consensus_4035#0 TACGGCCCACCGGCGGTCCGCGACTCCTACTCCCTCCTCGTCCTCAAC--GTCTCCTTCC 166
consensus_4035#1 CTCTTTTTTTTGGTGGGATAGAACTTTTATAATTGGGCCCTGCTTTACCAAACAAAAATA 178
* ** ** *** ** * * ** ** *
consensus_4035#0 GCACGACGGCCGACGACCTCCTC-GCGCTCTTCGACCGCTGCGGCGAGGTCCTCGACATC 225
consensus_4035#1 GTGTAATGAAAATTTGGGTGCTCTGCAACATACCATATCTG-GTCAAGAAGTACCATTTC 237
* * * * *** ** * * * *** * * ** * * **
consensus_4035#0 CGCATCCCCCGCGACCGCAGGACTGGGGATTCGAGA----GGGTTCGCGTTCGTGAGGTA 281
consensus_4035#1 AGTCTTCAAAGCAATACTGACATCTTTTACACTAAATTTAGCATGGGTACTTTTTTTCTG 297
* * * ** * * * * * * * * * * * *
consensus_4035#0 CAAGTACGAGGACGAGGCGCAGAAGGCCGTCGATAA--GCTCGACGGGAGGACG---GTG 336
consensus_4035#1 CCAGAAAGAAAATATGTTGTAGGAAATTATCGGTTACAATTCTACACAAGAATGTGCATG 357
* ** * ** * * * ** * *** * * ** ** ** * * **
consensus_4035#0 GATGGAG-----GGATATCATGGTGCAGTTCGCCAAGTACG---GCCCAAATGCTGAAA- 387
consensus_4035#1 TATGAAACACTCAGAAGTCAAAACG-ATTTCACACATTACATTTGCCTTTCTGTTTGTGT 416
*** * ** *** * * *** * * *** *** ** *
consensus_4035#0 --GAATTCATAAGGGGAGGATTGTAGAAGAGATTTCGAAGCCAAGAGGCCGATCCAGAAG 445
consensus_4035#1 TTGCAGTCATAAGGGGAGGATTGTAGAAGAGATTTCGAAGCCAAGAGGCCGATCCAGAAG 476
* * ******************************************************
consensus_4035#0 TCCTAGTCCAAAACGGAGGTATCGTGCTGACTACCGAGACAGGGGCTACCGTGATGACTA 505
consensus_4035#1 TCCTAGTCCAAAACGGAGGTATCGTGCTGACTACCGAGACAGGGGCTACCGTGATGACTA 536
************************************************************
consensus_4035#0 TCGGGACAGACACTATCGTGATGACTATCAGGACAGGGAGTATAGGAGAAGCCGAAGCAT 565
consensus_4035#1 TCGGGACAGACACTATCGTGATGACTATCAGGACAGGGAGTATAGGAGAAGCCGAAGCAT 596
************************************************************
consensus_4035#0 AGAGAGGTATGAACGTGAGAGGTATCAAGAAAAAGGCTATCGTCGCAGGAGCCGGAGCAT 625
consensus_4035#1 AGAGAGGTATGAACGTGAGAGGTATCAAGAAAAAGGCTATCGTCGCAGGAGCCGGAGCAT 656
************************************************************
consensus_4035#0 TAGCCCTGATTATGACAGGAGGCATCGCAAGAATGGGCCCAGGGATGAACGTTCTCCACG 685
consensus_4035#1 TAGCCCTGATTATGACAGGAGGCATCGCAAGAATGGGCCCAGGGATGAACGTTCTCCACG 716
************************************************************
consensus_4035#0 CTCTCGAAGCCCTTTGACCTAGCTGAATGCCCTACACAATATATCATAGATAGCTTGAGG 745
consensus_4035#1 CTCTCGAAGCCCTTTGACCTAGCTGAATGCCCTACACAATATATCATAGATAGCTTGAGG 776
************************************************************
consensus_4035#0 ATGAATAGACCGGAGCCTTGTCTGCTTGCTTAGGACGGATACTGATAATGGTGTAGTGTT 805
consensus_4035#1 ATGAATAGACCGGAGCCTTGTCTGCTTGCTTAGGACGAATACTGATAATGGTGTAGTGTT 836
************************************* **********************
consensus_4035#0 CAACATGGCTGCATTTGAGCATCCAAGGCTGCTTCCTTGTTAACAAGACAGCACCTTTTG 865
consensus_4035#1 CAACATGGCTGCATTTGAGCATCCAAGGCTGCTTCCTTGTTAACAAGACAGCACCTTTTG 896
************************************************************
consensus_4035#0 AGAACAATGTAGATTTCTGTTATTTTTTGTATCTACTTTATTTCTTATATCCATGTCAGT 925
consensus_4035#1 AGAACAATGTAGATTTCTGTTATTTTTTGTATCTACTTTATTTCTTATATCCATGTCAGT 956
************************************************************
consensus_4035#0 GCTATTTTTTTCCCTCAATTGAGTGCTTATTATAGACTGTAATTTGCATGATGGAGCGAA 985
consensus_4035#1 GCTAT------------------------------------------------------- 961
*****
consensus_4035#0 GAGGTGTTGGTTGATAATTGCTCCGTATGCAAGTTGCTGTCATGATCTTGCGGTTGACGG 1045
consensus_4035#1 ------------------------------------------------------------
consensus_4035#0 ACCATGTTGATGCTAAACACCTTGATGATGATTTTGGTGATTCTGAGGCTGATAATTTTG 1105
consensus_4035#1 ------------------------------------------------------------
consensus_4035#0 CTGCCCGATTTCATCCTTTCCTGTAAAAAAAAAAAAA 1142
consensus_4035#1 -------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||