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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4036#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1362 fasta sequence
[CCATTCCATGTACAGACTTATATTTGTTTCTATGTACAAGGGCATGGCACAGCGATCAACCGCTGAATGCCTTGTTTAAGCCAAAGGTAAATGACAGGTGCCCAGAGAAACAAAACACAGCAGACGTTTGCCTCGCGTTGCAGAATTGAAGCCTGTTCGACCTGTAACCAAACCAAACCTCTTGCACATTCTCTCTGTCAGTGGCAGTACTTTATGTCGTGCCTAAGCTCTGCATCCTCAAATACCAGGTCGTTTGACACAGCACCAGGACAACCAATGACCGGGCACCCCTTGAGAGAGGAACCCATGTAGTTCATGATGTGCTGCCGCTCGAATATGTGGCCACAAGTCATAATGAATCAAAGAAAAAAAATAATCAGTGAAGTAGGCTGCAGTTATTAGGCTAGGGAGTGCTCCCTCCAAATATCTAATCACAAATAAATGTTATTTATTCATGGTCCAATTTTATAAATTTTGTCCGATCAAATATTGCATTGAAAATATAATATTTTTATTAGGTGTTACAAATATTTCACACCAGAAATTATATGCTCAATATTGCACATTGGAATTTTTAGCAACCAATCCGATATCTGGATTCTGGACTTTTTTCTGTCTAAAACAGCACTATTTTGTGATAGAGGAGCTAATAACTGAAGTATATTTTGCTGACGATGTACCTTCTCAATGGCTGAGTTAACTCTGCAATCTCCGTCCCGGACAGTGGGCAATTGGTGTACTTGTCAAGAGATATAGCAATCTCATGGTTAACATTGTGAACCTGCTGTTCCCTCTCCAGTGCAGCCTTAAATTGTAGAAACAGAAGGTTGTCATCATGATCTATCTTCAACAGATGTGGTTTCACATTCTCAGCAGCAGCCACTAATTTGAACGCTTCGGGCGCTCTAATGGCATTGCAGAAGTTAACCACAATATCGTGTGCTACATTCACGATTTTACGCACCTCGTCTTGTCGACCGATCTTGATGAACTGGAAGGCGACATCCCGTAGGGAAATAAGCACATCCTCCAGCCTCTTGCCAAGATGGTGGGGTTGCTCCTGGGATTCACACGGTGAGGGCGGCGAGGGGGCGACCGTGTCCGAGGCGCGCGCGTCCCCCTGGTCGAGGTCGAGGACGCCCGCCGGCCGGGGCGGCGCCGAGGAGGCGGCTCGTCGTAGACGGCGCACCTCCCCAATCAGCTCCTTGAGAGTCCAGCCCTCGTACGGGCGACCGCGGGATCGGGTGGCAGCCACGGGCGGCAAGCTCTGTGGTGAAGCGGGCCGAGGGGGCGCCATGGCGGCGCGGCGAGGAAGGAGTCGGGAGTTAGGGCTCGGGTGATATCGACGGGGACGGCCGGGGA]
[+] EMBL CB673573 [CCATTCCATGTACAGACTTATATTTGTTTCTATGTACAAGGGCATGGCACAGCGATCAACCGCTGAATGCCTTGTTTAAGCCAAAGGTAAATGACAGGTGCCCAGAGAAACAAAACACAGCAGACGTTTGCCTCGCGTTGCAGAATTGAAGCCTGTTCGACCTGTAACCAAACCAAACCTCTTGCACATTCTCTCTGTCAGTGGCAGTACTTTATGTCGTGCCTAAGCTCTGCATCCTCAAATACCAGGTCGTTTGACACAGCACCAGGACAACCAATGACCGGGCACCCCTTGAGAGAGGAACCCATGTAGTTCATGATGTGCTGCCGCTCGAATATGTGGCCACAAGTCATAATGAATCAAAGAAAAAAAATAATCAGTGAAGTAGGCTGCAGTTATTAGGCTAGGGAGTGCTCCCTCCAAATATCTAATCACAAATAAATGTTATTTATTCATGGTCCAATTTTATAAATTTTGTCCGATCAAATATTGCATTGAAAATATAATATTTTTATTAGGTGTTACAAATATTTCACACCAGAAATTATATGCTCAATATTGCACATTGGAATTTTTAGCAACCAATCCGATATCTGGATTCTGGACTTTTTTCTGTCTAAAACAGCACTATTTTGTGATAGAGGAGCTAATAACTGAAGTATATTTTGCTGACGATGTACCTTCTCAATGGCTGAGTTA ]
[-] EMBL CB673572 [ GCTCAATATTGCACATTGGAATTTTTAGCAACCAATCCGATATCTGGATTCTGGACTTTTTTCTGTCTAAAACAGCACTATTTTGTGATAGAGGAGCTAATAACTGAAGTATATTTTGCTGACGATGTACCTTCTCAATGGCTGAGTTAACTCTGCAATCTCCGTCCCGGACAGTGGGCAATTGGTGTACTTGTCAAGAGATATAGCAATCTCATGGTTAACATTGTGAACCTGCTGTTCCCTCTCCAGTGCAGCCTTAAATTGTAGAAACAGAAGGTTGTCATCATGATCTATCTTCAACAGATGTGGTTTCACATTCTCAGCAGCAGCCACTAATTTGAACGCTTCGGGCGCTCTAATGGCATTGCAGAAGTTAACCACAATATCGTGTGCTACATTCACGATTTTACGCACCTCGTCTTGTCGACCGATCTTGATGAACTGGAAGGCGACATCCCGTAGGGAAATAAGCACATCCTCCAGCCTCTTGCCAAGATGGTGGGGTTGCTCCTGGGATTCACACGGTGAGGGCGGCGAGGGGGCGACCGTGTCCGAGGCGCGCGCGTCCCCCTGGTCGAGGTCGAGGACGCCCGCCGGCCGGGGCGGCGCCGAGGAGGCGGCTCGTCGTAGACGGCGCACCTCCCCAATCAGCTCCTTGAGAGTCCAGCCCTCGTACGGGCGACCGCGGGATCGGGTGGCAGCCACGGGCGGCAAGCTCTGTGGTGAAGCGGGCCGAGGGGGCGCCATGGCGGCGCGGCGAGGAAGGAGTCGGGAGTTAGGGCTCGGGTGATATCGACGGGGACGGCCGGGGA]
consensusID : consensus_4036#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 995 fasta sequence
[TGACAGTGCTCATTCATTTGCAGGTGTTGGAACTCTTCCATTCCATGTACAGAATAATATTTGTTTCTATGTACAAGGGCATGGCACAGCGATCAACCGCTGAATGCCTTGTTTAAGCCAAAGGTAAATGACAGGTGCCCAGAGAAACAAAACACAGCAGACGTTTGCCTCGCGTTGCAGAATTGAAGCCTGTTCGACCTGTAACCAAACCAAACCTCTTGCACATTCTCTCTGTCAGTGGCAGTACTTTATGTCGTGCCTAAGCTCTGCATCCTCAAATACCAGGTCGTTTGACACAGCACCAGGACAACCTTCTCAATGGCTGAGTTAACTCTGCAATCTCCGTCCCGGACAGTGGGCAATTGGTGTACTTGTCAAGAGATATAGCAATCTCATGGTTAACATTGTGAACCTGCTCCAGTGCAGCCTTAAATTGTAGAAACAGAAGGTTGTCATCATGATCTATCTTCAACAGATGTGGTTTCACATTCTCAGCAGCAGCCACTAATTTGAACGCTTCGGGCGCTCTAATGGCATTGCAGAAGTTAACCACAATATCGTGTGCTACATTCACGATTTTACGCACCTCGTCTTGTCGACCGATCTTGATGAACTGGAAGGCGACATCCCGTAGGGAAATAAGCACATCCTCCAGCCTCTTGCCAAGATGGTGGGGTTGCTCCTGGGATTCACACGGTGAGGGCGGCGAGGGGGCGACCGTGTCCGAGGCGCGCGCGTCCCCCTGGTCGAGGTCGAGGACGCCCGCCGGCCGGGGCGGCGCCGAGGAGGCGGCTCGTCGTAGACGGCGCACCTCCCCAATCAGCTCCTTGAGAGTCCAGCCCTCGTACGGGCGACCGCGGGATCGGGTGGCAGCCACGGGCGGCAAGCTCTGTGGTGAAGCGGGCCGAGGGGGCGCCATGGCGGCGCGGCGAGGAAGGAGTCGGGAGTTAGGGCTCGGGTGATATCGACGGGGACGGCCGGGGAGGGCGAAATGG]
[-] EMBL AK099956 [TGACAGTGCTCATTCATTTGCAGGTGTTGGAACTCTTCCATTCCATGTACAGAATAATATTTGTTTCTATGTACAAGGGCATGGCACAGCGATCAACCGCTGAATGCCTTGTTTAAGCCAAAGGTAAATGACAGGTGCCCAGAGAAACAAAACACAGCAGACGTTTGCCTCGCGTTGCAGAATTGAAGCCTGTTCGACCTGTAACCAAACCAAACCTCTTGCACATTCTCTCTGTCAGTGGCAGTACTTTATGTCGTGCCTAAGCTCTGCATCCTCAAATACCAGGTCGTTTGACACAGCACCAGGACAACCTTCTCAATGGCTGAGTTAACTCTGCAATCTCCGTCCCGGACAGTGGGCAATTGGTGTACTTGTCAAGAGATATAGCAATCTCATGGTTAACATTGTGAACCTGCTCCAGTGCAGCCTTAAATTGTAGAAACAGAAGGTTGTCATCATGATCTATCTTCAACAGATGTGGTTTCACATTCTCAGCAGCAGCCACTAATTTGAACGCTTCGGGCGCTCTAATGGCATTGCAGAAGTTAACCACAATATCGTGTGCTACATTCACGATTTTACGCACCTCGTCTTGTCGACCGATCTTGATGAACTGGAAGGCGACATCCCGTAGGGAAATAAGCACATCCTCCAGCCTCTTGCCAAGATGGTGGGGTTGCTCCTGGGATTCACACGGTGAGGGCGGCGAGGGGGCGACCGTGTCCGAGGCGCGCGCGTCCCCCTGGTCGAGGTCGAGGACGCCCGCCGGCCGGGGCGGCGCCGAGGAGGCGGCTCGTCGTAGACGGCGCACCTCCCCAATCAGCTCCTTGAGAGTCCAGCCCTCGTACGGGCGACCGCGGGATCGGGTGGCAGCCACGGGCGGCAAGCTCTGTGGTGAAGCGGGCCGAGGGGGCGCCATGGCGGCGCGGCGAGGAAGGAGTCGGGAGTTAGGGCTCGGGTGATATCGACGGGGACGGCCGGGGAGGGCGAAATGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4036#0 CCATTCCATGTACAGACTTATATTTGTTTCTATGTACAAGGGCATGGCACAGCGATCAAC 60
consensus_4036#1 ------------------------------------------------------------
consensus_4036#0 CGCTGAATGCCTTGTTTAAGCCAAAGGTAAATGACAGGTGCCCAGAGAAACAAAACACAG 120
consensus_4036#1 ------------------------------------------------------------
consensus_4036#0 CAGACGTTTGCCTCGCGTTGCAGAATTGAAGCCTGTTCGACCTGTAACCAAACCAAACCT 180
consensus_4036#1 ------------------------------------------------------------
consensus_4036#0 CTTGCACATTCTCTCTGTCAGTGGCAGTACTTTATGTCGTGCCTAAGCTCTGCATCCTCA 240
consensus_4036#1 ------------------------------------------------------------
consensus_4036#0 AATACCAGGTCGTTTGACACAGCACCAGGACAACCAATGACCGGGCACCCCTTGAGAGAG 300
consensus_4036#1 ------------------------------------------------------------
consensus_4036#0 GAACCCATGTAGTTCATGATGTGCTGCCGCTCGAATATGTGGCCACAAGTCATAATGAAT 360
consensus_4036#1 ------------------------------------------------------------
consensus_4036#0 CAAAGAAAAAAAATAATCAGTGA-AGTAGGCTGCAGTTATTAGGCTAGGGAGTGCTCCCT 419
consensus_4036#1 --------------------TGACAGTGCTCATTCATTTGCAGGTGTTGGAACTCTTCCA 40
*** *** * ** *** *** ** **
consensus_4036#0 CCAAATATCTAATCACAAATAAATGTTATTTATTCATGGTCCAATTTTATAAATTTTGTC 479
consensus_4036#1 TTCCATGTACAG--AATAATATTTGTT-TCTATGTACAAGGGCATGGCACAGCGATCAAC 97
** * * * **** **** * *** * ** * * * *
consensus_4036#0 CGATCAAATATTGCATTGAAAATATAATATTTTTATTAGGTGTTACAAATATTTCACACC 539
consensus_4036#1 CG-CTGAATGCCTTGTTTAAGCCA-AAGGTAAATGACAGGTGCCCAGAGAAACAAAACAC 155
** *** ** ** * ** * * ***** * * * *
consensus_4036#0 AGAAATTATATGCTCAATATTGCACATTGGAATTTTTAGCAACCAATCCGATATCTGGA- 598
consensus_4036#1 AGCAGACGTTTGCCTCGCGTTGCAGAATTGAAGCCTGTTCGACCTGTAACCAAACCAAAC 215
** * * *** ***** * * *** * * *** * * * *
consensus_4036#0 -TTCTGGAC-TTTTTTCTGTCTAAAACAGCACT--ATTTTGTGATAGAGGAGCTAATAAC 654
consensus_4036#1 CTCTTGCACATTCTCTCTGTCAGTGGCAGTACTTTATGTCGTGCCTAAGCTCTGCATCCT 275
* ** ** ** * ****** *** *** ** * *** ** **
consensus_4036#0 TGAAGTATATTTTGCT-GACGATGTACC---------TTCTCAATGGCTGAGTTAACTCT 704
consensus_4036#1 CAAATACCAGGTCGTTTGACACAGCACCAGGACAACCTTCTCAATGGCTGAGTTAACTCT 335
** * * * * *** * *** ***********************
consensus_4036#0 GCAATCTCCGTCCCGGACAGTGGGCAATTGGTGTACTTGTCAAGAGATATAGCAATCTCA 764
consensus_4036#1 GCAATCTCCGTCCCGGACAGTGGGCAATTGGTGTACTTGTCAAGAGATATAGCAATCTCA 395
************************************************************
consensus_4036#0 TGGTTAACATTGTGAACCTGCTGTTCCCTCTCCAGTGCAGCCTTAAATTGTAGAAACAGA 824
consensus_4036#1 TGGTTAACATTGTGAACCTGCT---------CCAGTGCAGCCTTAAATTGTAGAAACAGA 446
********************** *****************************
consensus_4036#0 AGGTTGTCATCATGATCTATCTTCAACAGATGTGGTTTCACATTCTCAGCAGCAGCCACT 884
consensus_4036#1 AGGTTGTCATCATGATCTATCTTCAACAGATGTGGTTTCACATTCTCAGCAGCAGCCACT 506
************************************************************
consensus_4036#0 AATTTGAACGCTTCGGGCGCTCTAATGGCATTGCAGAAGTTAACCACAATATCGTGTGCT 944
consensus_4036#1 AATTTGAACGCTTCGGGCGCTCTAATGGCATTGCAGAAGTTAACCACAATATCGTGTGCT 566
************************************************************
consensus_4036#0 ACATTCACGATTTTACGCACCTCGTCTTGTCGACCGATCTTGATGAACTGGAAGGCGACA 1004
consensus_4036#1 ACATTCACGATTTTACGCACCTCGTCTTGTCGACCGATCTTGATGAACTGGAAGGCGACA 626
************************************************************
consensus_4036#0 TCCCGTAGGGAAATAAGCACATCCTCCAGCCTCTTGCCAAGATGGTGGGGTTGCTCCTGG 1064
consensus_4036#1 TCCCGTAGGGAAATAAGCACATCCTCCAGCCTCTTGCCAAGATGGTGGGGTTGCTCCTGG 686
************************************************************
consensus_4036#0 GATTCACACGGTGAGGGCGGCGAGGGGGCGACCGTGTCCGAGGCGCGCGCGTCCCCCTGG 1124
consensus_4036#1 GATTCACACGGTGAGGGCGGCGAGGGGGCGACCGTGTCCGAGGCGCGCGCGTCCCCCTGG 746
************************************************************
consensus_4036#0 TCGAGGTCGAGGACGCCCGCCGGCCGGGGCGGCGCCGAGGAGGCGGCTCGTCGTAGACGG 1184
consensus_4036#1 TCGAGGTCGAGGACGCCCGCCGGCCGGGGCGGCGCCGAGGAGGCGGCTCGTCGTAGACGG 806
************************************************************
consensus_4036#0 CGCACCTCCCCAATCAGCTCCTTGAGAGTCCAGCCCTCGTACGGGCGACCGCGGGATCGG 1244
consensus_4036#1 CGCACCTCCCCAATCAGCTCCTTGAGAGTCCAGCCCTCGTACGGGCGACCGCGGGATCGG 866
************************************************************
consensus_4036#0 GTGGCAGCCACGGGCGGCAAGCTCTGTGGTGAAGCGGGCCGAGGGGGCGCCATGGCGGCG 1304
consensus_4036#1 GTGGCAGCCACGGGCGGCAAGCTCTGTGGTGAAGCGGGCCGAGGGGGCGCCATGGCGGCG 926
************************************************************
consensus_4036#0 CGGCGAGGAAGGAGTCGGGAGTTAGGGCTCGGGTGATATCGACGGGGACGGCCGGGGA-- 1362
consensus_4036#1 CGGCGAGGAAGGAGTCGGGAGTTAGGGCTCGGGTGATATCGACGGGGACGGCCGGGGAGG 986
**********************************************************
consensus_4036#0 ---------
consensus_4036#1 GCGAAATGG 995
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||