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Oryza sativa
cluster # 4040 cluster # 4040       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4040#0 length = 1235 sequences # 3  

consensusID : consensus_4040#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1235
fasta sequence
                              [GTTCAAACATACTAATGGATTCATGCAAAAGGCATCTAGAAACCATGAGGCGTTGTCGAACTGATGCTTCTAATGCTTGGAGAACAGCTGCCTGGGTGAGGGTTCCCTATCCATTCCAGTGGGGCCCTCCTACATTTCATTTCAAAACGAGCATCATTATGGTAATAGTTTCACTGGTTGCATCAGTTGATTCGCTTTCCTCGTATCATGCTACGTCATTGCTGGTCAATTTAAGTCCGCCAACACGTGGAGTTGTTAGCAGAGGGATTGGCTTTGAAGGGATTTCCACTCTTATCGCTGGAGTATGGGGTACAGGAACTGGCTCGACAACTCTAACAGAGAACATACATACCCTTGAGAATACCAAAATGGCCAGCAGAAGAGCCTTGCAGTTTGGCGCAGTCCTGTTGGTCATTTTTTCATTCTTTGGAAAAATTGGAGCCCTCCTTGCCTCCATTCCTGTTGCTTTGGCTGCCTCTGTTCTGTGCTTCACCTGGGCACTAATCGTCGCGCTTGGCTTGTCCACATTGCGATACACCCAAGCCGCAAGCTCGAGAAACATGATAATCGTCGGGTTTACGCTGTTCATCTCCATGTCTGTCCCAGCTTATTTCCAGCAATATGAACCCAGCACCAATCTTATTCTACCAAGCTATCTCCTTCCATACGCCGCAGCTTCAAGCGGACCGGTTCGCAGTGGCAGCAACGGGCTAAACTTTGCGGTGAACGCGCTCCTATCCATAAACGTGGTGGTGGCTCTCCTCGTCGCCTTGATCCTCGACAACACGGTGCCAGGCAGCAGGCAGGAGCGCGGGGTGTACATCTGGTCAGATCCAAACTCGCTGGAGATGGACCCTGCGTCGCTGGAGCCGTACCGGTTGCCTGAGAAGATCTCATGCTGGTTCAGATGGGCAAAGTGTGTCGGCATCTAACAACAAAAACAACAACAGAAGGAATGACCCCCCAACTGCACATTGCGTGCCGGAGGTGAAAGATTCTATTTATTCTATTGCACCCTGCTGGTGTAGGGATCATATGGAAGAGAGAGTTAATATATACGGATGCTATTTAGATAGGACCATGTTGATTCTGCTAGCTCCGAGGATGTCTGAGCATACTACCACTTATAAGTTGTAAATGTAGTCGTTTTGTTAGGAATGATTACCTATGTATTGACAGGTCTCTACGTGAAAAGAACTTCTCAGATTAGTTCTTGTGTGCAAAAAAAAAAAAAA]

[+] EMBL AK059640             [GTTCAAACATACTAATGGATTCATGCAAAAGGCATCTAGAAACCATGAGGCGTTGTCGAACTGATGCTTCTAATGCTTGGAGAACAGCTGCCTGGGTGAGGGTTCCCTATCCATTCCAGTGGGGCCCTCCTACATTTCATTTCAAAACGAGCATCATTATGGTAATAGTTTCACTGGTTGCATCAGTTGATTCGCTTTCCTCGTATCATGCTACGTCATTGCTGGTCAATTTAAGTCCGCCAACACGTGGAGTTGTTAGCAGAGGGATTGGCTTTGAAGGGATTTCCACTCTTATCGCTGGAGTATGGGGTACAGGAACTGGCTCGACAACTCTAACAGAGAACATACATACCCTTGAGAATACCAAAATGGCCAGCAGAAGAGCCTTGCAGTTTGGCGCAGTCCTGTTGGTCATTTTTTCATTCTTTGGAAAAATTGGAGCCCTCCTTGCCTCCATTCCTGTTGCTTTGGCTGCCTCTGTTCTGTGCTTCACCTGGGCACTAATCGTCGCGCTTGGCTTGTCCACATTGCGATACACCCAAGCCGCAAGCTCGAGAAACATGATAATCGTCGGGTTTACGCTGTTCATCTCCATGTCTGTCCCAGCTTATTTCCAGCAATATGAACCCAGCACCAATCTTATTCTACCAAGCTATCTCCTTCCATACGCCGCAGCTTCAAGCGGACCGGTTCGCAGTGGCAGCAACGGGCTAAACTTTGCGGTGAACGCGCTCCTATCCATAAACGTGGTGGTGGCTCTCCTCGTCGCCTTGATCCTCGACAACACGGTGCCAGGCAGCAGGCAGGAGCGCGGGGTGTACATCTGGTCAGATCCAAACTCGCTGGAGATGGACCCTGCGTCGCTGGAGCCGTACCGGTTGCCTGAGAAGATCTCATGCTGGTTCAGATGGGCAAAGTGTGTCGGCATCTAACAACAAAAACAACAACAGAAGGAATGACCCCCCAACTGCACATTGCGTGCCGGAGGTGAAAGATTCTATTTATTCTATTGCACCCTGCT GTGTAGGGATCATATGGAAGAGAGAGTTAATATATACGGATGCTATTTAGATAGGACCATGTTGATTCTGCTAGCTCCGAGGATGTCTGAGCATACTACCACTTATAAGTTGTAAATGTAGTCGTTTTGTTAGGAATGATTACCTATGTATTGACAGG                                                       ]
[+] EMBL AK061151             [  TCAAACATACTAATGGATTCATGCAAAAGGCATCTAGAAACCATGAGGCGTTGTCGAACTGATGCTTCTAATGCTTGGAGAACAGCTGCCTGGGTGAGGGTTCCCTATCCATTCCAGTGGGGCCCTCCTACATTTCATTTCAAAACGAGCATCATTATGGTAATAGTTTCACTGGTTGCATCAGTTGATTCGCTTTCCTCGTATCATGCTACGTCATTGCTGGTCAATTTAAGTCCGCCAACACGTGGAGTTGTTAGCAGAGGGATTGGCTTTGAAGGGATTTCCACTCTTATCGCTGGAGTATGGGGTACAGGAACTGGCTCGACAACTCTAACAGAGAACATACATACCCTTGAGAATACCAAAATGGCCAGCAGAAGAGCCTTGCAGTTTGGCGCAGTCCTGTTGGTCATTTTTTCATTCTTTGGAAAAATTGGAGCCCTCCTTGCCTCCATTCCTGTTGCTTTGGCTGCCTCTGTTCTGTGCTTCACCTGGGCACTAATCGTCGCGCTTGGCTTGTCCACATTGCGATACACCCAAGCCGCAAGCTCGAGAAACATGATAATCGTCGGGTTTACGCTGTTCATCTCCATGTCTGTCCCAGCTTATTTCCAGCAATATGAACCCAGCACCAATCTTATTCTACCAAGCTATCTCCTTCCATACGCCGCAGCTTCAAGCGGACCGGTTCGCAGTGGCAGCAACGGGCTAAACTTTGCGGTGAACGCGCTCCTATCCATAAACGTGGTGGTGGCTCTCCTCGTCGCCTTGATCCTCGACAACACGGTGCCAGGCAGCAGGCAGGAGTGCGGGGTGTACATCTGGTCAGATCCAAACTCGCTGGAGATGGACCCTGCGTCGCTGGAGCCGTACCGGTTGCCTGAGAAGATCTCATGCTGGTTCAGATGGGCAAAGTGTGTCGGCATCTAACAACAAAAACAACAACAGAAGGAATGACCCCCCAACTGCACATTGCGTGCCGGAGGTGAAAGATTCTATTTATTCTATTGCACCCTGCTGGTGTAGGGATCATATGGAAGAGAGAGTTAATATATACGGATGCTATTTAGATAGGACCATGTTGATTCTGCTAGCTCCGAGGATGTCTGAGCATACTACCACTTATAAGTTGTAAATGTAGTCGTTTTGTTAGGAATGATTACCTATGTATTGACAGGTCTCTACGTGAAAAGAACTTCTCAGATTAGT                        ]
[-] EMBL CA763008             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       caccgagGCAA GGGCCTAACTCTGCGATGAACGCGCTCCTATCCATAAACGTGGTGGTGGCTCTACTCGTTGCCTTGATCCTCGACAACACGGTGCCAGGCAGCAGGCAGGAGCCCGGGGTGTACATCTGGTCAGATCCAAACTCGCTGGAGATGGACCCTGCGTCGCTGGAGCCGTACCGGTTGCCTGAGAAGATCTCATGCTGGTTCAGATGGGCAAAGTGTGTCGGCATCTAACAACAAAAACAGCAACAGAAGGAATGACCCCCCAACTGCACATTGCGTGCCGGAGGTGAAAGATTCTATTTATTCTATTGCACCCTGCTGGTGTAGGGATCATATGGAAGAGAGAGTTAATATATACGGATGCTATTTAGATAGGACCATGTTGATTCTGCTAGCTCCGAGGATGTCTGAGCATACTACCACTTATAAGTTGTAAAAGTAGTCGTTTTGTTAGGAATGATTACCTATGTATTGACAGGTCTTTACCTGAAAAGAACTTCTCAGATTAGTTCTTGTGTGCAAAAAAAAAAAAAA]


>consensus_4040#0 GTTCAAACATACTAATGGATTCATGCAAAAGGCATCTAGAAACCATGAGGCGTTGTCGAA CTGATGCTTCTAATGCTTGGAGAACAGCTGCCTGGGTGAGGGTTCCCTATCCATTCCAGT GGGGCCCTCCTACATTTCATTTCAAAACGAGCATCATTATGGTAATAGTTTCACTGGTTG CATCAGTTGATTCGCTTTCCTCGTATCATGCTACGTCATTGCTGGTCAATTTAAGTCCGC CAACACGTGGAGTTGTTAGCAGAGGGATTGGCTTTGAAGGGATTTCCACTCTTATCGCTG GAGTATGGGGTACAGGAACTGGCTCGACAACTCTAACAGAGAACATACATACCCTTGAGA ATACCAAAATGGCCAGCAGAAGAGCCTTGCAGTTTGGCGCAGTCCTGTTGGTCATTTTTT CATTCTTTGGAAAAATTGGAGCCCTCCTTGCCTCCATTCCTGTTGCTTTGGCTGCCTCTG TTCTGTGCTTCACCTGGGCACTAATCGTCGCGCTTGGCTTGTCCACATTGCGATACACCC AAGCCGCAAGCTCGAGAAACATGATAATCGTCGGGTTTACGCTGTTCATCTCCATGTCTG TCCCAGCTTATTTCCAGCAATATGAACCCAGCACCAATCTTATTCTACCAAGCTATCTCC TTCCATACGCCGCAGCTTCAAGCGGACCGGTTCGCAGTGGCAGCAACGGGCTAAACTTTG CGGTGAACGCGCTCCTATCCATAAACGTGGTGGTGGCTCTCCTCGTCGCCTTGATCCTCG ACAACACGGTGCCAGGCAGCAGGCAGGAGCGCGGGGTGTACATCTGGTCAGATCCAAACT CGCTGGAGATGGACCCTGCGTCGCTGGAGCCGTACCGGTTGCCTGAGAAGATCTCATGCT GGTTCAGATGGGCAAAGTGTGTCGGCATCTAACAACAAAAACAACAACAGAAGGAATGAC CCCCCAACTGCACATTGCGTGCCGGAGGTGAAAGATTCTATTTATTCTATTGCACCCTGC TGGTGTAGGGATCATATGGAAGAGAGAGTTAATATATACGGATGCTATTTAGATAGGACC ATGTTGATTCTGCTAGCTCCGAGGATGTCTGAGCATACTACCACTTATAAGTTGTAAATG TAGTCGTTTTGTTAGGAATGATTACCTATGTATTGACAGGTCTCTACGTGAAAAGAACTT CTCAGATTAGTTCTTGTGTGCAAAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)