cluster # 4051

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Oryza sativa
cluster # 4051 cluster # 4051 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4051#0 length = 1554 sequences # 2

consensus_4051#1 length = 339 sequences # 1

consensusID : consensus_4051#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1554
fasta sequence

                              [CAAATCAACAACACACGATCAATCGATCGATTAATCCTCTCGAGTAATCGCCTTGAAATCATCGGTTGATTTCTTGCAGAGATTAAGTAGCAGCAGGTGTTCGTCGAGCCGAGCGGCGATGTCTCCCTCCCCTGATCTCGCCCGGATCCTCCCCCGCGTGCTCATCGTCTCCCGCCGCACCGTCCGCAAGAACAAGTTCGTCGACTTCGTCGGGGAGTACCACCTCGACCTCATCGTGGGATACGGCGCAGTGCCGGTGATCGTGCCGCGGGTCGCCGGCGTGCACACGCTGCTCGACTCGTTCGAGCCCATCCATGGCGTGCTGCTGTGCGAGGGCGAGGACGTCGACCCGTCGCTGTACGGCGGCGGCGGTGCGGGGTCAGGGGGGCTCTCGGCGGAGCAGCTCGACGCTGTGCGGAGCCTCCACCCGAGCGACGCCGCCATCGACCACGAGAAGGACTCCATCGAGCTCCGCCTCGCGCGCCGCTGCCTCGAGCGCAACATCCCCTTCCTCGGCATCTGCCGCGGCTCGCAGGTGCTCAACGTCGCCCGCGGCGGCACGCTCTACCAGGACGTCGACCACGAGCTCCCCGCCGCCGCCGCCGCCGTTCGCCACATCAACTACGACAACTACGACGGGCACCGCCACCCGGTGCGCGTCCTCCCCGGCACGCCGCTGCACGAGTGGTTCGCGGAGTCGCTCGACGGCGAGGACAGCCGGCTGACGGTGAACAGCTACCACCACCAGGGCGTGCGGCGGCTGGCGGAGCGGTTCGTGCCCATGGCGTTCGCGCCGGACGGCCTCGTCGAGGGGTTCTACGACCCCGACGCGTACAACCCCGGCGAGGGCAAGTTCATCATGGGGCTCCAGTTCCACCCGGAGCGCATGCGGAAGGCCGGCTCCGACGAGTTCGACTACCCGGGCTGCCCCATGGCCTACCAGGCGTTCGTCCGCGCCGTCGTCGCGTACCAGGAGAAGCTGGCCGCCGCCGCCGCCGCCATGCCCGCCTCGCCGAAGCTGAACCAGGAGATGGAGAAGCAGCGCAAGGTGCTCGTCCGGAGCTTCTCGCTCGCCAAGAACCTGTACGTCTCCGGCGCCGAAGCTGGCACGCCGCGGCCGGCCGAGCAGCGCGACCTCGACGCCGGCGCCGAGTTCCTCGAGCAGTCGAACACGGCGGCGCTGAGCGTGCAGCAGGAGAAGCGGCTGAAGCAGATGGGCGCGACGGTGAGGAACGCGTCGGGGTACATCAACCGGCTGAAGCTGAACGAGGAGCGGGAGGCGGCGGCGAGGGCGCTCATGGCGAAGATGTCCATCGACCAGCTCTCCGACCTCGCCTCCTTCTACCACATCATGGGGACCATCTGCTCCGAGGTGCTCGACAGGAAGCTGCACTCCGCTGCTCCCGCTCCATGAATCTCTCTTGCCTCGCTCTCCATCACACCATGCTGTGTGCTCCTGCTTGTTTGTTTGTTTGATCATTCTCATGACGACATGATTGATATTATCAAATGTTAATGCAAATGTTTACGAGATAATATTATCGTGTTTCTGTT]

[+] EMBL AK106157             [CAAATCAACAACACACGATCAATCGATCGATTAATCCTCTCGAGTAATCGCCTTGAAATCATCGGTTGATTTCTTGCAGAGATTAAGTAGCAGCAGGTGTTCGTCGAGCCGAGCGGCGATGTCTCCCTCCCCTGATCTCGCCCGGATCCTCCCCCGCGTGCTCATCGTCTCCCGCCGCACCGTCCGCAAGAACAAGTTCGTCGACTTCGTCGGGGAGTACCACCTCGACCTCATCGTGGGATACGGCGCAGTGCCGGTGATCGTGCCGCGGGTCGCCGGCGTGCACACGCTGCTCGACTCGTTCGAGCCCATCCATGGCGTGCTGCTGTGCGAGGGCGAGGACGTCGACCCGTCGCTGTACGGCGGCGGCGGTGCGGGGTCAGGGGGGCTCTCGGCGGAGCAGCTCGACGCTGTGCGGAGCCTCCACCCGAGCGACGCCGCCATCGACCACGAGAAGGACTCCATCGAGCTCCGCCTCGCGCGCCGCTGCCTCGAGCGCAACATCCCCTTCCTCGGCATCTGCCGCGGCTCGCAGGTGCTCAACGTCGCCCGCGGCGGCACGCTCTACCAGGACGTCGACCACGAGCTCCCCGCCGCCGCCGCCGCCGTTCGCCACATCAACTACGACAACTACGACGGGCACCGCCACCCGGTGCGCGTCCTCCCCGGCACGCCGCTGCACGAGTGGTTCGCGGAGTCGCTCGACGGCGAGGACAGCCGGCTGACGGTGAACAGCTACCACCACCAGGGCGTGCGGCGGCTGGCGGAGCGGTTCGTGCCCATGGCGTTCGCGCCGGACGGCCTCGTCGAGGGGTTCTACGACCCCGACGCGTACAACCCCGGCGAGGGCAAGTTCATCATGGGGCTCCAGTTCCACCCGGAGCGCATGCGGAAGGCCGGCTCCGACGAGTTCGACTACCCGGGCTGCCCCATGGCCTACCAGGCGTTCGTCCGCGCCGTCGTCGCGTACCAGGAGAAGCTGGCCGCCGCCGCCGCCGCCATGCCCGCCTCGCCGAAGCTGAACCAGGAGATGGAGAAGCAGCGCAAGGTGCTCGTCCGGAGCTTCTCGCTCGCCAAGAACCTGTACGTCTCCGGCGCCGAAGCTGGCACGCCGCGGCCGGCCGAGCAGCGCGACCTCGACGCCGGCGCCGAGTTCCTCGAGCAGTCGAACACGGCGGCGCTGAGCGTGCAGCAGGAGAAGCGGCTGAAGCAGATGGGCGCGACGGTGAGGAACGCGTCGGGGTACATCAACCGGCTGAAGCTGAACGAGGAGCGGGAGGCGGCGGCGAGGGCGCTCATGGCGAAGATGTCCATCGACCAGCTCTCCGACCTCGCCTCCTTCTACCACATCATGGGGACCATCTGCTCCGAGGTGCTCGACAGGAAGCTGCACTCCGCTGCTCCCGCTCCATGAATCTCTCTTGCCTCGCTCTCCATCACACCATGCTGTGTGCTCCTGCTTGTTTGTTTGTTTGATCATTCTCATGACGACATGATTGATATTATCAAATGTTAATGCAAATGTTTACGAGATAATATTATCGTGTTTCTGTT]
[+] EMBL OSC0361              [             CACGATCAATCGATCGATTAATCCTCTCGAGTAATCNCCTTGAAATCATCGGTTGATTTCTTGCAGAGATTAAGTAGCAGCAGGTGTTCGTCGAGCCGAGCGGCGATGTCTCCCTCCCCTGATCTCGCCCGGNTCCTCCCCCGCGTGCTCATCGTNTCCNGCCGCACCGTCCGCAAGAACAAGTTCGTNGACTTCGTGGNGGAGTACCACCTCGACCTCATCGTGGGATACGGCGCAGTGCCGGTAATCGTGCCGCGGGTNGCCGGCGTGCACACNTTGCTCGATTNGTTCGAGCCCATCCATGGn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]




>consensus_4051#0
CAAATCAACAACACACGATCAATCGATCGATTAATCCTCTCGAGTAATCGCCTTGAAATC
ATCGGTTGATTTCTTGCAGAGATTAAGTAGCAGCAGGTGTTCGTCGAGCCGAGCGGCGAT
GTCTCCCTCCCCTGATCTCGCCCGGATCCTCCCCCGCGTGCTCATCGTCTCCCGCCGCAC
CGTCCGCAAGAACAAGTTCGTCGACTTCGTCGGGGAGTACCACCTCGACCTCATCGTGGG
ATACGGCGCAGTGCCGGTGATCGTGCCGCGGGTCGCCGGCGTGCACACGCTGCTCGACTC
GTTCGAGCCCATCCATGGCGTGCTGCTGTGCGAGGGCGAGGACGTCGACCCGTCGCTGTA
CGGCGGCGGCGGTGCGGGGTCAGGGGGGCTCTCGGCGGAGCAGCTCGACGCTGTGCGGAG
CCTCCACCCGAGCGACGCCGCCATCGACCACGAGAAGGACTCCATCGAGCTCCGCCTCGC
GCGCCGCTGCCTCGAGCGCAACATCCCCTTCCTCGGCATCTGCCGCGGCTCGCAGGTGCT
CAACGTCGCCCGCGGCGGCACGCTCTACCAGGACGTCGACCACGAGCTCCCCGCCGCCGC
CGCCGCCGTTCGCCACATCAACTACGACAACTACGACGGGCACCGCCACCCGGTGCGCGT
CCTCCCCGGCACGCCGCTGCACGAGTGGTTCGCGGAGTCGCTCGACGGCGAGGACAGCCG
GCTGACGGTGAACAGCTACCACCACCAGGGCGTGCGGCGGCTGGCGGAGCGGTTCGTGCC
CATGGCGTTCGCGCCGGACGGCCTCGTCGAGGGGTTCTACGACCCCGACGCGTACAACCC
CGGCGAGGGCAAGTTCATCATGGGGCTCCAGTTCCACCCGGAGCGCATGCGGAAGGCCGG
CTCCGACGAGTTCGACTACCCGGGCTGCCCCATGGCCTACCAGGCGTTCGTCCGCGCCGT
CGTCGCGTACCAGGAGAAGCTGGCCGCCGCCGCCGCCGCCATGCCCGCCTCGCCGAAGCT
GAACCAGGAGATGGAGAAGCAGCGCAAGGTGCTCGTCCGGAGCTTCTCGCTCGCCAAGAA
CCTGTACGTCTCCGGCGCCGAAGCTGGCACGCCGCGGCCGGCCGAGCAGCGCGACCTCGA
CGCCGGCGCCGAGTTCCTCGAGCAGTCGAACACGGCGGCGCTGAGCGTGCAGCAGGAGAA
GCGGCTGAAGCAGATGGGCGCGACGGTGAGGAACGCGTCGGGGTACATCAACCGGCTGAA
GCTGAACGAGGAGCGGGAGGCGGCGGCGAGGGCGCTCATGGCGAAGATGTCCATCGACCA
GCTCTCCGACCTCGCCTCCTTCTACCACATCATGGGGACCATCTGCTCCGAGGTGCTCGA
CAGGAAGCTGCACTCCGCTGCTCCCGCTCCATGAATCTCTCTTGCCTCGCTCTCCATCAC
ACCATGCTGTGTGCTCCTGCTTGTTTGTTTGTTTGATCATTCTCATGACGACATGATTGA
TATTATCAAATGTTAATGCAAATGTTTACGAGATAATATTATCGTGTTTCTGTT

consensusID : consensus_4051#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 339
fasta sequence

                              [GCAGATGGGCGCGACGGTGAGGAACGCGTCGGGGTACATCAACCGGCTGAAGCTGAACGAGGAGCGGGAGGCGGCGGCGAGGGCGCTCATGGCGAAGATGTCCATCGACCAGCTCTCCGACCTCGCCTCCTTCTACCACATCATGGGGACCATCTGCTCCGAGGTGCTCGACAGGAAGCTGCACTCCGCTGCTCCCGCTCCATGAATCTCTCTTGCCTCGCTCTCCATCACACCATGCTGTGTGCTCCTGCTTGTTTGTTTGTTTGATCATTCTCATGACGACATGATTGATATTATCAAATGTTAATGCAAATGTTTACGAGATNAAAAAAAAAAAAA]

[+] EMBL CA756726             [GCAGATGGGCGCGACGGTGAGGAACGCGTCGGGGTACATCAACCGGCTGAAGCTGAACGAGGAGCGGGAGGCGGCGGCGAGGGCGCTCATGGCGAAGATGTCCATCGACCAGCTCTCCGACCTCGCCTCCTTCTACCACATCATGGGGACCATCTGCTCCGAGGTGCTCGACAGGAAGCTGCACTCCGCTGCTCCCGCTCCATGAATCTCTCTTGCCTCGCTCTCCATCACACCATGCTGTGTGCTCCTGCTTGTTTGTTTGTTTGATCATTCTCATGACGACATGATTGATATTATCAAATGTTAATGCAAATGTTTACGAGATNAAAAAAAAAAAAA]




>consensus_4051#1
GCAGATGGGCGCGACGGTGAGGAACGCGTCGGGGTACATCAACCGGCTGAAGCTGAACGA
GGAGCGGGAGGCGGCGGCGAGGGCGCTCATGGCGAAGATGTCCATCGACCAGCTCTCCGA
CCTCGCCTCCTTCTACCACATCATGGGGACCATCTGCTCCGAGGTGCTCGACAGGAAGCT
GCACTCCGCTGCTCCCGCTCCATGAATCTCTCTTGCCTCGCTCTCCATCACACCATGCTG
TGTGCTCCTGCTTGTTTGTTTGTTTGATCATTCTCATGACGACATGATTGATATTATCAA
ATGTTAATGCAAATGTTTACGAGATNAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4051#0      CAAATCAACAACACACGATCAATCGATCGATTAATCCTCTCGAGTAATCGCCTTGAAATC 60
consensus_4051#1      ------------------------------------------------------------
                                                                                  

consensus_4051#0      ATCGGTTGATTTCTTGCAGAGATTAAGTAGCAGCAGGTGTTCGTCGAGCCGAGCGGCGAT 120
consensus_4051#1      ------------------------------------------------------------
                                                                                  

consensus_4051#0      GTCTCCCTCCCCTGATCTCGCCCGGATCCTCCCCCGCGTGCTCATCGTCTCCCGCCGCAC 180
consensus_4051#1      ------------------------------------------------------------
                                                                                  

consensus_4051#0      CGTCCGCAAGAACAAGTTCGTCGACTTCGTCGGGGAGTACCACCTCGACCTCATCGTGGG 240
consensus_4051#1      ------------------------------------------------------------
                                                                                  

consensus_4051#0      ATACGGCGCAGTGCCGGTGATCGTGCCGCGGGTCGCCGGCGTGCACACGCTGCTCGACTC 300
consensus_4051#1      ------------------------------------------------------------
                                                                                  

consensus_4051#0      GTTCGAGCCCATCCATGGCGTGCTGCTGTGCGAGGGCGAGGACGTCGACCCGTCGCTGTA 360
consensus_4051#1      ------------------------------------------------------------
                                                                                  

consensus_4051#0      CGGCGGCGGCGGTGCGGGGTCAGGGGGGCTCTCGGCGGAGCAGCTCGACGCTGTGCGGAG 420
consensus_4051#1      ------------------------------------------------------------
                                                                                  

consensus_4051#0      CCTCCACCCGAGCGACGCCGCCATCGACCACGAGAAGGACTCCATCGAGCTCCGCCTCGC 480
consensus_4051#1      ------------------------------------------------------------
                                                                                  

consensus_4051#0      GCGCCGCTGCCTCGAGCGCAACATCCCCTTCCTCGGCATCTGCCGCGGCTCGCAGGTGCT 540
consensus_4051#1      ------------------------------------------------------------
                                                                                  

consensus_4051#0      CAACGTCGCCCGCGGCGGCACGCTCTACCAGGACGTCGACCACGAGCTCCCCGCCGCCGC 600
consensus_4051#1      ------------------------------------------------------------
                                                                                  

consensus_4051#0      CGCCGCCGTTCGCCACATCAACTACGACAACTACGACGGGCACCGCCACCCGGTGCGCGT 660
consensus_4051#1      ------------------------------------------------------------
                                                                                  

consensus_4051#0      CCTCCCCGGCACGCCGCTGCACGAGTGGTTCGCGGAGTCGCTCGACGGCGAGGACAGCCG 720
consensus_4051#1      ------------------------------------------------------------
                                                                                  

consensus_4051#0      GCTGACGGTGAACAGCTACCACCACCAGGGCGTGCGGCGGCTGGCGGAGCGGTTCGTGCC 780
consensus_4051#1      ------------------------------------------------------------
                                                                                  

consensus_4051#0      CATGGCGTTCGCGCCGGACGGCCTCGTCGAGGGGTTCTACGACCCCGACGCGTACAACCC 840
consensus_4051#1      ------------------------------------------------------------
                                                                                  

consensus_4051#0      CGGCGAGGGCAAGTTCATCATGGGGCTCCAGTTCCACCCGGAGCGCATGCGGAAGGCCGG 900
consensus_4051#1      ------------------------------------------------------------
                                                                                  

consensus_4051#0      CTCCGACGAGTTCGACTACCCGGGCTGCCCCATGGCCTACCAGGCGTTCGTCCGCGCCGT 960
consensus_4051#1      ------------------------------------------------------------
                                                                                  

consensus_4051#0      CGTCGCGTACCAGGAGAAGCTGGCCGCCGCCGCCGCCGCCATGCCCGCCTCGCCGAAGCT 1020
consensus_4051#1      ------------------------------------------------------------
                                                                                  

consensus_4051#0      GAACCAGGAGATGGAGAAGCAGCGCAAGGTGCTCGTCCGGAGCTTCTCGCTCGCCAAGAA 1080
consensus_4051#1      ------------------------------------------------------------
                                                                                  

consensus_4051#0      CCTGTACGTCTCCGGCGCCGAAGCTGGCACGCCGCGGCCGGCCGAGCAGCGCGACCTCGA 1140
consensus_4051#1      ------------------------------------------------------------
                                                                                  

consensus_4051#0      CGCCGGCGCCGAGTTCCTCGAGCAGTCGAACACGGCGGCGCTGAGCGTGCAGCAGGAGAA 1200
consensus_4051#1      ------------------------------------------------------------
                                                                                  

consensus_4051#0      GCGGCTGAAGCAGATGGGCGCGACGGTGAGGAACGCGTCGGGGTACATCAACCGGCTGAA 1260
consensus_4051#1      ---------GCAGATGGGCGCGACGGTGAGGAACGCGTCGGGGTACATCAACCGGCTGAA 51
                               ***************************************************

consensus_4051#0      GCTGAACGAGGAGCGGGAGGCGGCGGCGAGGGCGCTCATGGCGAAGATGTCCATCGACCA 1320
consensus_4051#1      GCTGAACGAGGAGCGGGAGGCGGCGGCGAGGGCGCTCATGGCGAAGATGTCCATCGACCA 111
                      ************************************************************

consensus_4051#0      GCTCTCCGACCTCGCCTCCTTCTACCACATCATGGGGACCATCTGCTCCGAGGTGCTCGA 1380
consensus_4051#1      GCTCTCCGACCTCGCCTCCTTCTACCACATCATGGGGACCATCTGCTCCGAGGTGCTCGA 171
                      ************************************************************

consensus_4051#0      CAGGAAGCTGCACTCCGCTGCTCCCGCTCCATGAATCTCTCTTGCCTCGCTCTCCATCAC 1440
consensus_4051#1      CAGGAAGCTGCACTCCGCTGCTCCCGCTCCATGAATCTCTCTTGCCTCGCTCTCCATCAC 231
                      ************************************************************

consensus_4051#0      ACCATGCTGTGTGCTCCTGCTTGTTTGTTTGTTTGATCATTCTCATGACGACATGATTGA 1500
consensus_4051#1      ACCATGCTGTGTGCTCCTGCTTGTTTGTTTGTTTGATCATTCTCATGACGACATGATTGA 291
                      ************************************************************

consensus_4051#0      TATTATCAAATGTTAATGCAAATGTTTACGAGATAATATTATCGTGTTTCTGTT 1554
consensus_4051#1      TATTATCAAATGTTAATGCAAATGTTTACGAGATNAAAAAAAAAAAAA------ 339
                      ********************************** * *  *