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Oryza sativa
cluster # 4058 cluster # 4058       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4058#0 length = 2601 sequences # 3  

consensusID : consensus_4058#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2601
fasta sequence
                              [AGCTGCTACCTTTGGGAGTTGGGTGGCGCCATGGCAACATCTTCGGTGGCCGCCATGCCGCACGACTCCACGCCATGGAGGGACCCCTCCAGGGCATCCTCCAGGCAGCCCGCCAGGGGGTTCTTCAACATCCTCGTCCCGCCGCCGCAGTCGCCGCGCCCGCGCTGCCCCGACCACCAACACCACCACCACCACCACCACCACGATGCTGCTGGTGGCGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGAGCCCACGCCGAGGCGGCGGAAGCAGATACTGGATCGGTGGGCGGCGGCGGCGGCGGCCGCGTCCGCCACGGCGTCCGCCGAGGCCCCCGCGCCGCAGGAGCAGAGGCGGAGGGCGAGGGACGCCGAGCTGTCCGCGCTCGCGTCGGCCACCCGCCCCGTGACCGCCCGCGCCGCCGTGTTCCGGGAGCCGTCCCCAGCGCCGTCGGACGCGTCGTCGGGGGCGGGGGCGGGGTGCGGGGGCGGGGCCGGGTGCGGCGCGGAGCTCCCGCCCGCGGCGCCGCGCGCGTCGTCGCTGATCCAGCGGTGGCGGGAGATCGAGGCGGTGGGGCCCGCCACGCCGCGGCCCTGCGACTGGCCTCCGACTCCGACGGCGGCTCGCCGCGGGGCCGCGTGGGGTGCATCGTCAAGAAGCTCAGCGGCACGTCGTCGATCCCCGACGACGAGCTGGACGCCGCCAACAAGGAGGTCGCGATGTCGCAGTCCGCGCCCCCGTCGCCCGCGCCGATGCGCGCCGGGGTGGAGCCGCCCACCAACATCGCCGGTATCAACGGGTCCAGGCCGACGCAGCTGGTAGTCCGCACGGTGCGTGGCCGCCGCGCAATGGAGGAGCTCGTCGCCATGATGGCCCATTGCCGGAGGTGCGAGCTCGCCGCGGTCGCCGACCGCCACGTCGTGTCGCGGTTCTCGCACAAAGGCAGGATCCAGTCCATGCTTCGTCTTAGGCTGTTGCGTCAGGGATTTAAAGTTAAGGATGAAGTTTGGACTCTACCAAAACCAGTCAGGCCACGCCTTCCAAAACATGAGCATGAGGCCTATACCACAAGCAAGTGCATTGCTGGTAACCAACATAAGGGTGGCCAGGTTTTGGCTGAGAAGTCTACTGGTTCTGTTGAGAGACTAGTTTCTTCGGATGGTTTAGGAAATGAACAAAATGATGGGCAGAACAGCAACAGTGAAAATCAATGTCAGGAAGGTTGCAAAAACATGGTAAAATTATGTACCCAGAATCAGGAATATTCTGAGCCATCGAGTTTCGTGAGGTATGACGAGCATAGTACCGTTGATGATGTCTCGCCAAGTACCATAAGCACATTGCATGAACTTTGCACTCCATCCTCAAGGGGTGATAATCTAAGAGAAGAAGACAACCAAAGCCTGAATGGTTCATGGGAAGAGAGGGCACTATGGATAAGTAGTCTTGGTTGGCCTGCACCAGTGGAAGCCATGAGTCCAGACAGCTGGAATCAGGATGAAATTGGGGATATTGAGAATCACACTCAGAATGAATTTAATGATCGCCCCTGGATAGATTCCCCTAACTCATGGAGATCATTGTGTGTTGCCACACAAGCAGACAGCGGTGCTTTGTCTGGCAATGCTGACATCTGCAATCTTCTTGAGAGCAAAAATGTCTCAAAGTCTCTTGAGAGTGATTTTAGCAATAAAATGAACAACATGTTGCTAACAATCTTGCGCAAACAAAGGCAACAACACATGATTGATGATTTTGAAGGATATTATGATGAGCGCTTATACTGGAGACAGAATGATGAACAACAGAATGCTGATCAGAGGGTATCTGCACAGTGTTCATTAGCACCTGTCTCCCATCTCCACCAACAAGAAGGCTGGCAGCATTCTTCGTTTGAACATCAACATCATGAAAACCAAAACTTCCTTGAAATGGAGGTCAGGGTTAGAAGTGAAATGGCACAGGTCCATC-ATGAAATATATGAACT-ACGGAAGTTGGTGGAAAGTTGTA-TTGCATCCCA-AGTAAAGATCCAGCACTCCATTAAAGAGGAGATGTGCAGTGCACTTCGCGAAGCAGGGTTGATGCCAAGCCAACCCGACACACCAGCAAAAAGGGGAAGCTGCTGCATCTGCCATCAGACGCAAGTTGACTCTCTACTTTACAGGTGTGGACATATGTGCACCTGTTTCAATTGCGCCGATCAGCTGAAATCGAGCAACAGGAGTTGCCCAATCTGCCAATCTCCTATTGAGGATGTTGTTCGAGCGCATATGAATTTTTGAGGTTTAGGTCTTAGGAGGAAGAAGAGCTGCCACTCTATAGCTTTAGATGTGGAGTTTGTGAAGCCCTGGTTTTGAGGAGGCTTCTTGAATCACCTTCATTAACAACCAAAAGTATACGAGCTAGCGTTTCTTGAGAAATGTAAATATGTTTTGTGCAAGCGCAATGTGTACTAAGTACTGACAGAAAGGAACAAACGAAATATCTAATCCAAATGCTGATCTTGTTTCTGATCATTTTTCTTGCTTTCCTTTGTTTCCTTTAAGTTCTGTATTGAACATGTTTGTAGCCTTCAGTTCTGATAATGGGCTTGTCTTG]

[+] EMBL AK120716             [AGCTGCTACCTTTGGGAGTTGGGTGGCGCCATGGCAACATCTTCGGTGGCCGCCATGCCGCACGACTCCACGCCATGGAGGGACCCCTCCAGGGCATCCTCCAGGCAGCCCGCCAGGGGGTTCTTCAACATCCTCGTCCCGCCGCCGCAGTCGCCGCGCCCGCGCTGCCCCGACCACCAACACCACCACCACCACCACCACCACGATGCTGCTGGTGGCGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGAGCCCACGCCGAGGCGGCGGAAGCAGATACTGGATCGGTGGGCGGCGGCGGCGGCGGCCGCGTCCGCCACGGCGTCCGCCGAGGCCCCCGCGCCGCAGGAGCAGAGGCGGAGGGCGAGGGACGCCGAGCTGTCCGCGCTCGCGTCGGCCACCCGCCCCGTGACCGCCCGCGCCGCCGTGTTCCGGGAGCCGTCCCCAGCGCCGTCGGACGCGTCGTCGGGGGCGGGGGCGGGGTGCGGGGGCGGGGCCGGGTGCGGCGCGGAGCTCCCGCCCGCGGCGCCGCGCGCGTCGTCGCTGATCCAGCGGTGGCGGGAGATCGAGGCGGTGGGGCCCGCCACGCCGCGGCCCTGCGACTGGCCTCCGACTCCGACGGCGGCTCGCCGCGGGGCCGCGTGGGGTGCATCGTCAAGAAGCTCAGCGGCACGTCGTCGATCCCCGACGACGAGCTGGACGCCGCCAACAAGGAGGTCGCGATGTCGCAGTCCGCGCCCCCGTCGCCCGCGCCGATGCGCGCCGGGGTGGAGCCGCCCACCAACATCGCCGGTATCAACGGGTCCAGGCCGACGCAGCTGGTAGTCCGCACGGTGCGTGGCCGCCGCGCAATGGAGGAGCTCGTCGCCATGATGGCCCATTGCCGGAGGTGCGAGCTCGCCGCGGTCGCCGACCGCCACGTCGTGTCGCGGTTCTCGCACAAAGGCAGGATCCAGTCCATGCTTCGTCTTAGGCTGTTGCGTCAGGGATTTAAAGTTAAGGATGAAGTTTGGACTCTACCAAAACCAGTCAGGCCACGCCTTCCAAAACATGAGCATGAGGCCTATACCACAAGCAAGTGCATTGCTGGTAACCAACATAAGGGTGGCCAGGTTTTGGCTGAGAAGTCTACTGGTTCTGTTGAGAGACTAGTTTCTTCGGATGGTTTAGGAAATGAACAAAATGATGGGCAGAACAGCAACAGTGAAAATCAATGTCAGGAAGGTTGCAAAAACATGGTAAAATTATGTACCCAGAATCAGGAATATTCTGAGCCATCGAGTTTCGTGAGGTATGACGAGCATAGTACCGTTGATGATGTCTCGCCAAGTACCATAAGCACATTGCATGAACTTTGCACTCCATCCTCAAGGGGTGATAATCTAAGAGAAGAAGACAACCAAAGCCTGAATGGTTCATGGGAAGAGAGGGCACTATGGATAAGTAGTCTTGGTTGGCCTGCACCAGTGGAAGCCATGAGTCCAGACAGCTGGAATCAGGATGAAATTGGGGATATTGAGAATCACACTCAGAATGAATTTAATGATCGCCCCTGGATAGATTCCCCTAACTCATGGAGATCATTGTGTGTTGCCACACAAGCAGACAGCGGTGCTTTGTCTGGCAATGCTGACATCTGCAATCTTCTTGAGAGCAAAAATGTCTCAAAGTCTCTTGAGAGTGATTTTAGCAATAAAATGAACAACATGTTGCTAACAATCTTGCGCAAACAAAGGCAACAACACATGATTGATGATTTTGAAGGATATTATGATGAGCGCTTATACTGGAGACAGAATGATGAACAACAGAATGCTGATCAGAGGGTATCTGCACAGTGTTCATTAGCACCTGTCTCCCATCTCCACCAACAAGAAGGCTGGCAGCATTCTTCGTTTGAACATCAACATCATGAAAACCAAAACTTCCTTGAAATGGAGGTCAGGGTTAGAAGTGAAATGGCACAGGTCCATC ATGAAATATATGAACT ACGGAAGTTGGTGGAAAGTTGTA TTGCATCCCA AGTAAAGATCCAGCACTCCATTAAAGAGGAGATGTGCAGTGCACTTCGCGAAGCAGGGTTGATGCCAAGCCAACCCGACACACCAGCAAAAAGGGGAAGCTGCTGCATCTGCCATCAGACGCAAGTTGACTCTCTACTTTACAGGTGTGGACATATGTGCACCTGTTTCAATTGCGCCGATCAGCTGAAATCGAGCAACAGGAGTTGCCCAATCTGCCAATCTCCTATTGAGGATGTTGTTCGAGCGCATATGAATTTTTGAGGTTTAGGTCTTAGGAGGAAGAAGAGCTGCCACTCTATAGCTTTAGATGTGGAGTTTGTGAAGCCCTGGTTTTGAGGAGGCTTCTTGAATCACCTTCATTAACAACCAAAAGTATACGAGCTAGCGTTTCTTGAGAAATGTAAATATGTTTTGTGCAAGCGCAATGTGTACTAAGTACTGACAGAAAGGAACAAACGAAATATCTAATCCAAATGCTGATCTTGTTTCTGATCATTTTTCTTGCTTTCCTTTGTTTCCTTTAAGTTCTGTATTGAACATGTTTGTAGCCTTCAGTTCTGATAATGGGCTTGTCTTG]
[+] EMBL CA767469             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     nGTCTTGGTTGGCCTGCACCAGTGGAAGCCATGAGTCCAGACAGCTGGAATCAGGATGAAATTGGGGATATTGAGAAT ACACTCAGAATGAATTTAATGATCGCCCCTGGATAGACTCCCCTAACTCATGGAGATCATTGTGTGTCGCCACACAAGCAGACAGCGGTGCTTTGTCTGGCAATGCTGACATCTGCAATCTTCTTGAGAGCAAAAATGTCTCAAAGTCTCTTGAGAGTGATTTTAGCAATAAAATGAACAACATGTTGCTAACAATCTTGCGCAAACAAAGGCAACAACACATGATTGATGATTTTGAAGGATATTATGATGAGCGCTTATACTGGAGACAGAATGATGAACAACAGAATGCTGATCAGAGGGTATCTGCACAGTGTTCATTAGCACCTGTCTCCCATCTCCACCAACAAGAAGGCTGGCAGCATTCTTCGTTTGAACATCAACATCATGAAAACCAAAACTTCCTTGAAATGGAGGTCAGGGTTAGAAGTGAAATGGCACAGGTCCATC ATGAAATATATGAACT ACGGAAGTTGGTGGAAAGTTGTA TTGCATCCCA AGTAAAGATCCAGCACTCCATTAAAGAGGAGATGTGCAGTGCACTTCGCGAAGCAGGGTTGATGCCAAGCCAACCCGACACACCAGCAAAAAGGGGAAGCTGCTGCATCTGCCATCAGACGCAAGTTGACTCTCTACTTTACAGGTGTGGACATATGTGCACCTGTTTCAATTGCGCCGATCAGCTGAAATCGAGCAACAGGAG                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BI812357             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GTCCATCAATGAAATATATGAACTCACGGAAGTTGGTGGAAAGTTGTATTTGCATCCCACAGTAAAGATCCAGCACTCCATTAAAGAGGAGATGT CAGT CACTTCGCGAACCAGGGTTGATGCCAAGCCAACCCGACACACCA C AAAAGGGGAAGCTGCTGCATCTGCCATCAGACGCAAGTTGACTCTCTACTTTACAGGTGTGGACATATGTGCACCTGTTTCAATTGCGCCGATCAGCTGAAATCGA CCACAGGAGTTGCCCAATCTGCC ATCTCCTATTGAGGATGTTGTTCGAGCGCATATGAATTTTTGAGGTTTAGGTCTTAGGAGGAAGAAGAGCTGCCACTCTATAGCTTTAGATGTGGAGTTTGTGAAG CCTGGTTTTGAGGAGGCTTCTTGAATCACCTTCATTAACAACC AAAGTATACGAGCTAGCGTTTCTTGAGAAATGTAAATATGTTTTGTGCAAGCGC ATGTGTACTGAGTACTGACAGAAAGGAACCAACGAAATATCTAATCC AATGCTGATCTTGTTTCTGATCAaaaaaaaa                                                                          ]


>consensus_4058#0 AGCTGCTACCTTTGGGAGTTGGGTGGCGCCATGGCAACATCTTCGGTGGCCGCCATGCCG CACGACTCCACGCCATGGAGGGACCCCTCCAGGGCATCCTCCAGGCAGCCCGCCAGGGGG TTCTTCAACATCCTCGTCCCGCCGCCGCAGTCGCCGCGCCCGCGCTGCCCCGACCACCAA CACCACCACCACCACCACCACCACGATGCTGCTGGTGGCGCGGCGGCGGCGGCGGCGGCG GCGGCGGCGGAGCCCACGCCGAGGCGGCGGAAGCAGATACTGGATCGGTGGGCGGCGGCG GCGGCGGCCGCGTCCGCCACGGCGTCCGCCGAGGCCCCCGCGCCGCAGGAGCAGAGGCGG AGGGCGAGGGACGCCGAGCTGTCCGCGCTCGCGTCGGCCACCCGCCCCGTGACCGCCCGC GCCGCCGTGTTCCGGGAGCCGTCCCCAGCGCCGTCGGACGCGTCGTCGGGGGCGGGGGCG GGGTGCGGGGGCGGGGCCGGGTGCGGCGCGGAGCTCCCGCCCGCGGCGCCGCGCGCGTCG TCGCTGATCCAGCGGTGGCGGGAGATCGAGGCGGTGGGGCCCGCCACGCCGCGGCCCTGC GACTGGCCTCCGACTCCGACGGCGGCTCGCCGCGGGGCCGCGTGGGGTGCATCGTCAAGA AGCTCAGCGGCACGTCGTCGATCCCCGACGACGAGCTGGACGCCGCCAACAAGGAGGTCG CGATGTCGCAGTCCGCGCCCCCGTCGCCCGCGCCGATGCGCGCCGGGGTGGAGCCGCCCA CCAACATCGCCGGTATCAACGGGTCCAGGCCGACGCAGCTGGTAGTCCGCACGGTGCGTG GCCGCCGCGCAATGGAGGAGCTCGTCGCCATGATGGCCCATTGCCGGAGGTGCGAGCTCG CCGCGGTCGCCGACCGCCACGTCGTGTCGCGGTTCTCGCACAAAGGCAGGATCCAGTCCA TGCTTCGTCTTAGGCTGTTGCGTCAGGGATTTAAAGTTAAGGATGAAGTTTGGACTCTAC CAAAACCAGTCAGGCCACGCCTTCCAAAACATGAGCATGAGGCCTATACCACAAGCAAGT GCATTGCTGGTAACCAACATAAGGGTGGCCAGGTTTTGGCTGAGAAGTCTACTGGTTCTG TTGAGAGACTAGTTTCTTCGGATGGTTTAGGAAATGAACAAAATGATGGGCAGAACAGCA ACAGTGAAAATCAATGTCAGGAAGGTTGCAAAAACATGGTAAAATTATGTACCCAGAATC AGGAATATTCTGAGCCATCGAGTTTCGTGAGGTATGACGAGCATAGTACCGTTGATGATG TCTCGCCAAGTACCATAAGCACATTGCATGAACTTTGCACTCCATCCTCAAGGGGTGATA ATCTAAGAGAAGAAGACAACCAAAGCCTGAATGGTTCATGGGAAGAGAGGGCACTATGGA TAAGTAGTCTTGGTTGGCCTGCACCAGTGGAAGCCATGAGTCCAGACAGCTGGAATCAGG ATGAAATTGGGGATATTGAGAATCACACTCAGAATGAATTTAATGATCGCCCCTGGATAG ATTCCCCTAACTCATGGAGATCATTGTGTGTTGCCACACAAGCAGACAGCGGTGCTTTGT CTGGCAATGCTGACATCTGCAATCTTCTTGAGAGCAAAAATGTCTCAAAGTCTCTTGAGA GTGATTTTAGCAATAAAATGAACAACATGTTGCTAACAATCTTGCGCAAACAAAGGCAAC AACACATGATTGATGATTTTGAAGGATATTATGATGAGCGCTTATACTGGAGACAGAATG ATGAACAACAGAATGCTGATCAGAGGGTATCTGCACAGTGTTCATTAGCACCTGTCTCCC ATCTCCACCAACAAGAAGGCTGGCAGCATTCTTCGTTTGAACATCAACATCATGAAAACC AAAACTTCCTTGAAATGGAGGTCAGGGTTAGAAGTGAAATGGCACAGGTCCATCATGAAA TATATGAACTACGGAAGTTGGTGGAAAGTTGTATTGCATCCCAAGTAAAGATCCAGCACT CCATTAAAGAGGAGATGTGCAGTGCACTTCGCGAAGCAGGGTTGATGCCAAGCCAACCCG ACACACCAGCAAAAAGGGGAAGCTGCTGCATCTGCCATCAGACGCAAGTTGACTCTCTAC TTTACAGGTGTGGACATATGTGCACCTGTTTCAATTGCGCCGATCAGCTGAAATCGAGCA ACAGGAGTTGCCCAATCTGCCAATCTCCTATTGAGGATGTTGTTCGAGCGCATATGAATT TTTGAGGTTTAGGTCTTAGGAGGAAGAAGAGCTGCCACTCTATAGCTTTAGATGTGGAGT TTGTGAAGCCCTGGTTTTGAGGAGGCTTCTTGAATCACCTTCATTAACAACCAAAAGTAT ACGAGCTAGCGTTTCTTGAGAAATGTAAATATGTTTTGTGCAAGCGCAATGTGTACTAAG TACTGACAGAAAGGAACAAACGAAATATCTAATCCAAATGCTGATCTTGTTTCTGATCAT TTTTCTTGCTTTCCTTTGTTTCCTTTAAGTTCTGTATTGAACATGTTTGTAGCCTTCAGT TCTGATAATGGGCTTGTCTTG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)