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Oryza sativa
cluster # 4059 cluster # 4059       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4059#0 length = 1808 sequences # 3  

consensusID : consensus_4059#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1808
fasta sequence
                              [AAACATCAAATCTTCCTGTGTGAGAGATCAAGAGAGAGGAAGTGATAGATTTTTTTTACCTGACCTAGCTGTTTGATACTTTGATTTGTTAATTTCTTGTGCATTTGCTGTTTGTGATCCGTTGCTGTGATCGATGTGCCCCTGAACGAGGTCCACGACGTCGTTGGAGTTGGCGCCGGCGAGCCGGCGAAGATGGATCGCCGCCGCGCGGCGGA-GCTGATGCTGCTGTCCCTCTCCTCGCAGAGAACGCGCATGGCGCTCGTGGGTGGCAACCACACCGCCGCCCGCTTCTGCACCCGCTAACCCCGCCGCCGCCGCCGTCTCCTCCTCTTCTTCTCCCATCTCTTCTCTCTCTTGATCATCTTCTCCGTTCATCTCTGCTCTGAGTGTGTTTGATCCTCTTCTTGGCGATATTTTTGTGTTGGGATCAAAGGCGACGATGAAGAAATTAGCTGCGAGGGATGGCAGGGCCGCCAGCAATGGCAGGCTCCTCCGGCTGGTGGCGCGGGCGGCGCTCCTCGCCGTCGTCGTGCTTTCTCTCGTGTCGCTCCGGCTGGTGCTCTCGCCGGCCACGGCGGTGGGCGACGACGGCGAGCTCTACCTGCCGGTGCTACTCGCCGAAGTAAGCGACCGCGGCTACCTGCGCCACGGCAGCCGCTCGGTGTTCGTCGGCGACGCCGGGTCGTGGGCGCCGTTCCTCGAGCGGCACCACGTCGCCGTCTTCCGCGCCGGCAAGCTCCGCGAGCTCGCCGACGAGTCCGTCGACGCCGTCCTCTTCGACGGCGACGCGGTTCAGCTCGGCGCCGTCAACCGCGTCCTCAAGCTCGGCGGCGTCGCCGCCGGTTTCGCCACGTCGGGGTCGTCGACGTTGCAGCTGCCTGACAACTACAAGGCCGTGTTCGCGCACAGGTCGGAGGCGGCCATCGCCTTCGCCGTGGAGAAGACCACGCCGCCGACCACGAGCGCCGCCGTGACGGCTTCGCCGGTGGGACCTCACCGGAAGCTCCTCGCATTGCCGGGGAGCAAGAAGGACGACGCGTTGGCCGGTCTCGAGGCCGTGCTCCTCGAGCCGCCGCAGAGGCAGCACCGGCGAATCATCCGGCGGCTGCGGCCAAGGTACCTCCCGGAGCTGACCGGCGACTCGCTGGAAGGCTACCGCCGACGAACGTTCATCGACGTGGCGCCCTCTCGCGGCGGCGGCGCGGCGTCGTGGTTCAAGAAGCACTACCCGAGAGGGGAGCGCGTGTTCGACATGGTGCGCCTCGACGCCGCCGACGCGACGGAGCCGGCGGCGAGCTCATCGGCGGCGGGGATCGCCGAGTGGCTGGAAGGGAACGTGAGGGAGGAGGACTACGTGGTGGTGAAGGCCGGCGTGGAGGCCGTGGAGGAGATCCTCCGCAGGCGCGCCGCCGTCCGCCGCGTCGACGAGCTCTTCCTCGACTGCGACGCCGGCGCCGGCGCCGACGCGGCACGCCGCCCCTACTGGGAGTGCCTGGCGCTGTACGGCCGGCTGCGTGACCACGGCGTCGCCGTGCATCAATGGTGGGAGCTCATGAATGCTCGACCACGTAGAGAGAGAAAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAAATGATGGAGCTCATGAGAGGGAAGAGATCACTTTGGGTTCAGAACAAACTATGAATATGCAGGGTACTGATTAACAGCTAACGGATAAATATATTTGGTTTTGGTTGGGGAAGAGTATAAACTTATGTAAATCAAGCAAAACAGTTGTTCCAAGATTGGACAATTTTTGGATCTTGAAATTCAAAAA]

[+] EMBL AK070250             [AAACATCAAATCTTCCTGTGTGAGAGATCAAGAGAGAGGAAGTGATAGATTTTTTTTACCTGACCTAGCTGTTTGATACTTTGATTTGTTAATTTCTTGTGCATTTGCTGTTTGTGATCCGTTGCTGTGATCGATGTGCCCCTGAACGAGGTCCACGACGTCGTTGGAGTTGGCGCCGGCGAGCCGGCGAAGATGGATCGCCGCCGCGCGGCGGA GCTGATGCTGCTGTCCCTCTCCTCGCAGAGAACGCGCATGGCGCTCGTGGGTGGCAACCACACCGCCGCCCGCTTCTGCACCCGCTAACCCCGCCGCCGCCGCCGTCTCCTCCTCTTCTTCTCCCATCTCTTCTCTCTCTTGATCATCTTCTCCGTTCATCTCTGCTCTGAGTGTGTTTGATCCTCTTCTTGGCGATATTTTTGTGTTGGGATCAAAGGCGACGATGAAGAAATTAGCTGCGAGGGATGGCAGGGCCGCCAGCAATGGCAGGCTCCTCCGGCTGGTGGCGCGGGCGGCGCTCCTCGCCGTCGTCGTGCTTTCTCTCGTGTCGCTCCGGCTGGTGCTCTCGCCGGCCACGGCGGTGGGCGACGACGGCGAGCTCTACCTGCCGGTGCTACTCGCCGAAGTAAGCGACCGCGGCTACCTGCGCCACGGCAGCCGCTCGGTGTTCGTCGGCGACGCCGGGTCGTGGGCGCCGTTCCTCGAGCGGCACCACGTCGCCGTCTTCCGCGCCGGCAAGCTCCGCGAGCTCGCCGACGAGTCCGTCGACGCCGTCCTCTTCGACGGCGACGCGGTTCAGCTCGGCGCCGTCAACCGCGTCCTCAAGCTCGGCGGCGTCGCCGCCGGTTTCGCCACGTCGGGGTCGTCGACGTTGCAGCTGCCTGACAACTACAAGGCCGTGTTCGCGCACAGGTCGGAGGCGGCCATCGCCTTCGCCGTGGAGAAGACCACGCCGCCGACCACGAGCGCCGCCGTGACGGCTTCGCCGGTGGGACCTCACCGGAAGCTCCTCGCATTGCCGGGGAGCAAGAAGGACGACGCGTTGGCCGGTCTCGAGGCCGTGCTCCTCGAGCCGCCGCAGAGGCAGCACCGGCGAATCATCCGGCGGCTGCGGCCAAGGTACCTCCCGGAGCTGACCGGCGACTCGCTGGAAGGCTACCGCCGACGAACGTTCATCGACGTGGCGCCCTCTCGCGGCGGCGGCGCGGCGTCGTGGTTCAAGAAGCACTACCCGAGAGGGGAGCGCGTGTTCGACATGGTGCGCCTCGACGCCGCCGACGCGACGGAGCCGGCGGCGAGCTCATCGGCGGCGGGGATCGCCGAGTGGCTGGAAGGGAACGTGAGGGAGGAGGACTACGTGGTGGTGAAGGCCGGCGTGGAGGCCGTGGAGGAGATCCTCCGCAGGCGCGCCGCCGTCCGCCGCGTCGACGAGCTCTTCCTCGACTGCGACGCCGGCGCCGGCGCCGACGCGGCACGCCGCCCCTACTGGGAGTGCCTGGCGCTGTACGGCCGGCTGCGTGACCACGGCGTCGCCGTGCATCAATGGTGGGAGCTCATGAATGCTCGACCACGTAGAGAGAGAAAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAAATGATGGAGCTCATGAGAGGGAAGAGATCACTTTGGGTTCAGAACAAACTATGAATATGCAGGGTACTGATTAACAGCTAACGGATAAATAT                                                                                               ]
[+] EMBL C72105               [                            CAAGAGAGAGGAAGTGATAGATTTTTTTTACCTGACCTAGCTGTTTGATACTTTGATTTGTTAATTTCTTGTGCATTTGCTGTTTGTGATCCGTTGCTGTGATCGATGTGCCCCTGAACGAGGTCCACGACGTCGTTGGAGTTGGCGCCGGCGAGCCGG GAAGATGGATCGCCGCCGCGC GNGGANGCTGATGCTGCTGTCCCTCTCCTCGCAGAGAACGCGCATGGCGCTCGTGGGTGGCAACCACACCGCCGCCCGCTTCTGCACCCGCTAACCCCGCCGCCGCCGCCGTCTCCTCCTCTTCTTCTCCCATCTCTTCTCTCTCTTGATCATCTTCTCCGTTCATCTCTGCTCTGAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU101116             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GACCACGTAGAGAGAGAAAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAAATGATGGAGCTCATGAGAGGGAAGAGATCACTTTGGGTTCAGAACAAACTATGAATATGCAGGGTACTGATTAACAGCTAACGGATAAATATATTTGGTTTTGGTTGGGGAAGAGTATAAACTTATGTAAATCAAGCAAAACAGTTGTTCCAAGATTGGACAATTTTTGGATCTTGAAATTCAAAAA]


>consensus_4059#0 AAACATCAAATCTTCCTGTGTGAGAGATCAAGAGAGAGGAAGTGATAGATTTTTTTTACC TGACCTAGCTGTTTGATACTTTGATTTGTTAATTTCTTGTGCATTTGCTGTTTGTGATCC GTTGCTGTGATCGATGTGCCCCTGAACGAGGTCCACGACGTCGTTGGAGTTGGCGCCGGC GAGCCGGCGAAGATGGATCGCCGCCGCGCGGCGGAGCTGATGCTGCTGTCCCTCTCCTCG CAGAGAACGCGCATGGCGCTCGTGGGTGGCAACCACACCGCCGCCCGCTTCTGCACCCGC TAACCCCGCCGCCGCCGCCGTCTCCTCCTCTTCTTCTCCCATCTCTTCTCTCTCTTGATC ATCTTCTCCGTTCATCTCTGCTCTGAGTGTGTTTGATCCTCTTCTTGGCGATATTTTTGT GTTGGGATCAAAGGCGACGATGAAGAAATTAGCTGCGAGGGATGGCAGGGCCGCCAGCAA TGGCAGGCTCCTCCGGCTGGTGGCGCGGGCGGCGCTCCTCGCCGTCGTCGTGCTTTCTCT CGTGTCGCTCCGGCTGGTGCTCTCGCCGGCCACGGCGGTGGGCGACGACGGCGAGCTCTA CCTGCCGGTGCTACTCGCCGAAGTAAGCGACCGCGGCTACCTGCGCCACGGCAGCCGCTC GGTGTTCGTCGGCGACGCCGGGTCGTGGGCGCCGTTCCTCGAGCGGCACCACGTCGCCGT CTTCCGCGCCGGCAAGCTCCGCGAGCTCGCCGACGAGTCCGTCGACGCCGTCCTCTTCGA CGGCGACGCGGTTCAGCTCGGCGCCGTCAACCGCGTCCTCAAGCTCGGCGGCGTCGCCGC CGGTTTCGCCACGTCGGGGTCGTCGACGTTGCAGCTGCCTGACAACTACAAGGCCGTGTT CGCGCACAGGTCGGAGGCGGCCATCGCCTTCGCCGTGGAGAAGACCACGCCGCCGACCAC GAGCGCCGCCGTGACGGCTTCGCCGGTGGGACCTCACCGGAAGCTCCTCGCATTGCCGGG GAGCAAGAAGGACGACGCGTTGGCCGGTCTCGAGGCCGTGCTCCTCGAGCCGCCGCAGAG GCAGCACCGGCGAATCATCCGGCGGCTGCGGCCAAGGTACCTCCCGGAGCTGACCGGCGA CTCGCTGGAAGGCTACCGCCGACGAACGTTCATCGACGTGGCGCCCTCTCGCGGCGGCGG CGCGGCGTCGTGGTTCAAGAAGCACTACCCGAGAGGGGAGCGCGTGTTCGACATGGTGCG CCTCGACGCCGCCGACGCGACGGAGCCGGCGGCGAGCTCATCGGCGGCGGGGATCGCCGA GTGGCTGGAAGGGAACGTGAGGGAGGAGGACTACGTGGTGGTGAAGGCCGGCGTGGAGGC CGTGGAGGAGATCCTCCGCAGGCGCGCCGCCGTCCGCCGCGTCGACGAGCTCTTCCTCGA CTGCGACGCCGGCGCCGGCGCCGACGCGGCACGCCGCCCCTACTGGGAGTGCCTGGCGCT GTACGGCCGGCTGCGTGACCACGGCGTCGCCGTGCATCAATGGTGGGAGCTCATGAATGC TCGACCACGTAGAGAGAGAAAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGA AATGATGGAGCTCATGAGAGGGAAGAGATCACTTTGGGTTCAGAACAAACTATGAATATG CAGGGTACTGATTAACAGCTAACGGATAAATATATTTGGTTTTGGTTGGGGAAGAGTATA AACTTATGTAAATCAAGCAAAACAGTTGTTCCAAGATTGGACAATTTTTGGATCTTGAAA TTCAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)