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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4064#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1188 fasta sequence
[GCCTGCGACCACCTCCTCCCCAACCTCCGAGAGGCCGCGTCCGGGCCGGAGGGCGTCACGGCCGACGCCATCAGGGACGCGTTCCTGGCCACGGAGGAAGGCTTCCTCGCGGTCGTCTCGCGGATGTGGGAGGCGCAGCCGGACATGGCCACCGTCGGGACGTGCTGCCTCGTCGGAGTCGTGCACCAGAGGACGCTCTTCGTCGCCAACCTCGGGGATTCCAGGGCCGTTCTTGGGAAGAAGGTTGGTCGCGCTGGTCAGATTACCGCCGAGCAACTGTCCAGTGAGCATAACGCCAATGAAGAGGATGTCAGGCAGGAGCTCATGGCTCAGCACCCAGATGATCCTCAGATTGTTGCTCTTAAACATGGGGTTTGGAGAGTCAAGGGCATCATACAGGTGTCCAGATCATTAGGCGATGCATATCTAAAGCATAGTCAGTATAACACGGAACAGATCAAACCAAAGTTCAGGCTCCCTGAACCATTCAGCAGGCCTATATTGAGTGCCAACCCATCTATCATCGCACGTTGCCTTCAACCAAGTGATTGCTTCATCATATTTGCCTCCGATGGTTTGTGGGAACACCTGAGTAATCAGCAGGCTGTTGAGATTGTGCACAACCATCAACGAGCTGGAAGTGCAAGAAGGCTCATAAAGGCAGCTCTCCATGAAGCAGCACGGAAACGTGAGATGCGTTATTCAGACCTTATGAAGATTGACAAGAAGGTTCGCAGGCATTTCCATGACGATATCACTGTCATCGTCTTATTCATAAATTATGACCAATTAGCTAAAGGTCATTCACAAGGGCAATCTCTATCCATCAGATGTGCTTTAGATCATTGATTATGAGCTAATCCTACCATGAATGATCAGTTTCTGTGGGCAACAATCGCTACTCTGATGGTTTCATCAACCATACCATTGTGAACAGCCCACAACCTCCTGCAGCAG-TTTTTTTTTCTTTTTTCCCTTTGGCTTTTGCACATAAAACTGACTACCTTCTAAATTGTCAGTTTTCCCCTCAAACGAATCGGATAAATGTGCATATTCCTGAAGCTGGAACTTTGCCTAGAGTTGAGGGAGCTTTATTAAGGATTATCATGTATTTTTTAATTGATTCATTTGTTCTCGTTTACATAAGCTAGTTTCTTTTGTATTGAGGAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK120748 [GCCTGCGACCACCTCCTCCCCAACCTCCGAGAGGCCGCGTCCGGGCCGGAGGGCGTCACGGCCGACGCCATCAGGGACGCGTTCCTGGCCACGGAGGAAGGCTTCCTCGCGGTCGTCTCGCGGATGTGGGAGGCGCAGCCGGACATGGCCACCGTCGGGACGTGCTGCCTCGTCGGAGTCGTGCACCAGAGGACGCTCTTCGTCGCCAACCTCGGGGATTCCAGGGCCGTTCTTGGGAAGAAGGTTGGTCGCGCTGGTCAGATTACCGCCGAGCAACTGTCCAGTGAGCATAACGCCAATGAAGAGGATGTCAGGCAGGAGCTCATGGCTCAGCACCCAGATGATCCTCAGATTGTTGCTCTTAAACATGGGGTTTGGAGAGTCAAGGGCATCATACAGGTGTCCAGATCATTAGGCGATGCATATCTAAAGCATAGTCAGTATAACACGGAACAGATCAAACCAAAGTTCAGGCTCCCTGAACCATTCAGCAGGCCTATATTGAGTGCCAACCCATCTATCATCGCACGTTGCCTTCAACCAAGTGATTGCTTCATCATATTTGCCTCCGATGGTTTGTGGGAACACCTGAGTAATCAGCAGGCTGTTGAGATTGTGCACAACCATCAACGAGCTGGAAGTGCAAGAAGGCTCATAAAGGCAGCTCTCCATGAAGCAGCACGGAAACGTGAGATGCGTTATTCAGACCTTATGAAGATTGACAAGAAGGTTCGCAGGCATTTCCATGACGATATCACTGTCATCGTCTTATTCATAAATTATGACCAATTAGCTAAAGGTCATTCACAAGGGCAATCTCTATCCATCAGATGTGCTTTAGATCATTGATTATGAGCTAATCCTACCATGAATGATCAGTTTCTGTGGGCAACAATCGCTACTCTGATGGTTTCATCAACCATACCATTGTGAACAGCCCACAACCTCCTGCAGCAG TTTTTTTTTCTTTTTTCCCTTTGGCTTTTGCACATAAAACTGACTACCTTCTAAATTGTCAGTTTTCCCCTCAAACGAATCGGATAAATGTGCATATTCCTGAAGCTGGAACTTTGCCTAGAGTTGAGGGAGCTTTATTAAGGATTATCATGTATTTTTTAATTGATTCATTTGTTCTCGTTTACATAAGCTAGTTTCTTT ]
[-] EMBL CA762881 [ TTTAGTGCCCACCCATCTATCATCGCCCGTTGCCTTCACCCAAGTGATTGCTTCATCATATTTGCCTCCGATGGTTTGTGGGAACCCCTGAGTAATCAGCAGGCTGTTGAGATTGTGCACAACCATCAACGAGCTGGAAGTGCAAGAAGGCTCATAAAGGCAGCTCTCCATGAAGCAGCACGGAAACGTGAGATGCGTTATTCAGACCTTATGAAGATTGACAAGAAGGTTCGCAGGCCTTTCCCTGACGATATCACCGTCATCGTTTTATTCATAAATTATGGCCCATTAGCTAAAGGTCATTCCCAAGGGCAATCTCTATCCCTTAGATGTGCTTTAGATCCTTGATTATGAGCTAATCCTTCCCTGAATGATCAGTTTCTGTGGGCAACAATCGCTACTTTGATGGTTTCATCAACCATACCCTTGTGAACAGCCCCCAACCTCCTGCAGCAGTTTTTTTTTTCTTTTTTCCCTTTGGCTTTTGCCCATAAAACTGACTACCTTTTAAATTGTCAGTTTTCCCCCCCAACGAATTGGATAAATGTGCATATTCCTGAAACTGGAACTTTGCCTAGAGTTGAGGGAGCTTTATTAAGGATTATCATGTATTTTTTAATTGATTCATTTGTTCTCGTTTACATAAGCTAGTTTCTTTTGTATTGAGGAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_4064#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence
[GGTGTCCAGATCATTAGGCGATGCATATCTAAAGCATAGTCAGTATAACACGGAACAGATCAAACCAAAGTTCAGGCTCCCTGAACCATTCAGCAGGCCTATATTGAGTGCCAACCCATCTATCATCGCACGTTGCCTTCAACCAAGTGATTGCTTCATCATATTTGCCTCCGATGGTTTGTGGGAACACCTGAGTAATCAGCAGGCTGTTGAGATTGTGCACAACCATCAACGAGCTGTAAGATTCTGCACATTTAACTTGTTTATCTACTGCTTCACATTCTGGTCTCTGCTGTTGCCTAAGGGCTTGTTCAGTTAATCCCTCTCACAAGGGGATTGAGGGGGATTTGGAGGGAATTTATTCCACACATATTGTGGTGTGGAATTATTGCCCCTCAATACTCTCCAATTCCCTCCTCTTGAGGATTAGACGAGCAAGGCCCAAGTGATCTTAAACAATTTGCAATATTTTATGACCGGAGTTTTTCCCACTGAATTTTTTGTTAAGGCTTCAGGACATGAACGGTGAACCTTGGAACCTTATTTCACCTGGAAATAATGCCTTGATGTATTTTGCTATAATATTTACAATCAAATGTATGCATTAA]
[+] EMBL CB096882 [GGTGTCCAGATCATTAGGCGATGCATATCTAAAGCATAGTCAGTATAACACGGAACAGATCAAACCAAAGTTCAGGCTCCCTGAACCATTCAGCAGGCCTATATTGAGTGCCAACCCATCTATCATCGCACGTTGCCTTCAACCAAGTGATTGCTTCATCATATTTGCCTCCGATGGTTTGTGGGAACACCTGAGTAATCAGCAGGCTGTTGAGATTGTGCACAACCATCAACGAGCTGTAAGATTCTGCACATTTAACTTGTTTATCTACTGCTTCACATTCTGGTCTCTGCTGTTGCCTAAGGGCTTGTTCAGTTAATCCCTCTCACAAGGGGATTGAGGGGGATTTGGAGGGAATTTATTCCACACATATTGTGGTGTGGAATTATTGCCCCTCAATACTCTCCAATTCCCTCCTCTTGAGGATTAGACGAGCAAGGCCCAAGTGATCTTAAACAATTTGCAATATTTTATGACCGGAGTTTTTCCCACTGAATTTTTTGTTAAGGCTTCAGGACATGAACGGTGAACCTTGGAACCTTATTTCACCTGGAAATAATGCCTTGATGTATTTTGCTATAATATTTACAATCAAATGTATGCATTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4064#0 GCCTGCGACCACCTCCTCCCCAACCTCCGAGAGGCCGCGTCCGGGCCGGAGGGCGTCACG 60
consensus_4064#1 ------------------------------------------------------------
consensus_4064#0 GCCGACGCCATCAGGGACGCGTTCCTGGCCACGGAGGAAGGCTTCCTCGCGGTCGTCTCG 120
consensus_4064#1 ------------------------------------------------------------
consensus_4064#0 CGGATGTGGGAGGCGCAGCCGGACATGGCCACCGTCGGGACGTGCTGCCTCGTCGGAGTC 180
consensus_4064#1 ------------------------------------------------------------
consensus_4064#0 GTGCACCAGAGGACGCTCTTCGTCGCCAACCTCGGGGATTCCAGGGCCGTTCTTGGGAAG 240
consensus_4064#1 ------------------------------------------------------------
consensus_4064#0 AAGGTTGGTCGCGCTGGTCAGATTACCGCCGAGCAACTGTCCAGTGAGCATAACGCCAAT 300
consensus_4064#1 ------------------------------------------------------------
consensus_4064#0 GAAGAGGATGTCAGGCAGGAGCTCATGGCTCAGCACCCAGATGATCCTCAGATTGTTGCT 360
consensus_4064#1 ------------------------------------------------------------
consensus_4064#0 CTTAAACATGGGGTTTGGAGAGTCAAGGGCATCATACAGGTGTCCAGATCATTAGGCGAT 420
consensus_4064#1 --------------------------------------GGTGTCCAGATCATTAGGCGAT 22
**********************
consensus_4064#0 GCATATCTAAAGCATAGTCAGTATAACACGGAACAGATCAAACCAAAGTTCAGGCTCCCT 480
consensus_4064#1 GCATATCTAAAGCATAGTCAGTATAACACGGAACAGATCAAACCAAAGTTCAGGCTCCCT 82
************************************************************
consensus_4064#0 GAACCATTCAGCAGGCCTATATTGAGTGCCAACCCATCTATCATCGCACGTTGCCTTCAA 540
consensus_4064#1 GAACCATTCAGCAGGCCTATATTGAGTGCCAACCCATCTATCATCGCACGTTGCCTTCAA 142
************************************************************
consensus_4064#0 CCAAGTGATTGCTTCATCATATTTGCCTCCGATGGTTTGTGGGAACACCTGAGTAATCAG 600
consensus_4064#1 CCAAGTGATTGCTTCATCATATTTGCCTCCGATGGTTTGTGGGAACACCTGAGTAATCAG 202
************************************************************
consensus_4064#0 CAGGCTGTTGAGATTGTGCACAACCATCAACGAGCTGGAAGTGCAAGAAGGCTCATAAAG 660
consensus_4064#1 CAGGCTGTTGAGATTGTGCACAACCATCAACGAGCTGTAAGATTCTGCACATTTA---AC 259
************************************* *** * * * * *
consensus_4064#0 GCAGCTCTCCATGAAGCAGCACGGAAACGTGAGATGCGTTATTCAGACCTTATGAAGATT 720
consensus_4064#1 TTGTTTATCTACTGCTTCACATTCTGGTCTCTGCTGT-TGCCTAAGGGCTTGTTCAGTT- 317
* ** * ** * * ** * * ** *** * ** *
consensus_4064#0 GACAAGAAGGTTCGCAGGCATTTCCATGACGATATCACTGTCATCGTCTTATTCATAAAT 780
consensus_4064#1 ---AATCCCTCTCACAAGGGGATTGAGGGGGATTTGGAGGGAATT-TATTCCACACATAT 373
** ** ** * * * * *** * * ** * ** ** * **
consensus_4064#0 TATGACCAATTAGCTAAAGGTCATTCACAAGGGCAATCTCTATCCATCAGATGTGCTTTA 840
consensus_4064#1 TGTGGT--GTGGAATTATTGCCCCTCA-----ATACTCTCCAATTCCC-----TCCTCTT 421
* ** * * * * * *** * **** * * * ** *
consensus_4064#0 GATCATTGATTATGAGCTAATCCTACCATGAATGATCAGTTTCTGTGGGCAACAATCGCT 900
consensus_4064#1 GAGGATTAG--ACGAGCAAGGCCCA-----AGTGATCTTAAACAATTTGCAATATTTTAT 474
** *** * **** * ** * * ***** * * **** * * *
consensus_4064#0 ACTCTGATGGTTTCATCAACCATACCATTGTGAACAGCCCACAACCTCCTGCAGCAGTTT 960
consensus_4064#1 GACCGGA-GTTTTTCCCACTGAATTTTTTGTTAAGGCTTCAGGACATGA-ACGGTGAACC 532
* ** * *** ** * **** ** ** ** * * *
consensus_4064#0 TTTTTTCTTTTTTCCCTTTGGCTTTTGCACATAAAACTGACTACCTTCTAAATTGTCAGT 1020
consensus_4064#1 TTGGAACCTTATTTCACCTGG-------AAATAATGCCT-TGATGTATTTTGCTATAATA 584
** * ** ** * *** * **** * * * * * * *
consensus_4064#0 TTTCCCCTCAAACGAATCGGATAAATGTGCATATTCCTGAAGCTGGAACTTTGCCTAGAG 1080
consensus_4064#1 TTTACAATCAAATGTATGCATTAA------------------------------------ 608
*** * ***** * ** ***
consensus_4064#0 TTGAGGGAGCTTTATTAAGGATTATCATGTATTTTTTAATTGATTCATTTGTTCTCGTTT 1140
consensus_4064#1 ------------------------------------------------------------
consensus_4064#0 ACATAAGCTAGTTTCTTTTGTATTGAGGAAAAAAAAAAAAAAAAAAAA 1188
consensus_4064#1 ------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||