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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4077#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1798 fasta sequence
[CCGTCGTGGGGTATCGACCAGTTCGACATGCTTGATGTCGGTCTCGGCACGCAGACTTATGAGTCTGAGGTTGCGCTCACGCTTCCAAAGTTGACTGGCAATGGCAACACTGCGGTTGGCGTCGGTGCGAGGAAGTGTGCCAAGAGGGGGGACAGCATTTGGGGTGCATGGTTCTTCTTCAATCACTACTTCAAACCTGCACTTGTGGAAAAGCCGAAGGGCAAGGTGACACGGGACTCTTCTGGGAGCGTTTCGGGCTTTGAGAAGTCTGATCTTCGCCTTGATGTCTTCCTGGTGCAGCATGACATGGAGAACATGTACATGTGGGTTTTTAAGGAACGGCCTGACAATGCCCTCGGGAAGATGCAGCTCCGGAGCTTCATGAATGGGCATTCCAAGCATGGTGAGCCATCCTTTCCATTCAGTGCAGATAAGGGCTTTGCAAGGTCACACCGCATGCAACGAAAGCACTATCGAGGGCTGTCCAACCCACAATGCCTTCATGGGATAGAGATTGTGAGTTCACCAAATCTGTCAGCTGTTCCTGAAGCTGAAATGAAAAGGTGGGCGGAACTTACAGGAAGAGAACTTAATTTCTCAATTCCTCCTGAAGCAAGTGACTTTGAATCATGGAGGAATCTTCCAAGCACTGATTTCGAACTTGATAGGCCACTGCCACTGTCATCAAAGATTACACATGGCTCTCACAGTCACAAAAAGGCACTGAATGGTTCAGGTCTTAACCTTTCTACGCCACCATCATCAGACGATGGGATGGACCTTTCACCAAAATGCGCCAAGCGACGGAAGGACTTCTTTGCTCATGGTGCAGATGAGGATTGCGTGATGGCAAATAATTCTTGTTCTGACAGAGAGCAAGAGATAGAAGTTCACACAGGTGAGCCGTCATGGATGCATGAGTTCACTGGTGTAGCAAAACATGCAAGTGGACCTGTTACGGCTGCCAAGACAATATATGAGGACGATGAAGGCTACTTAATCATGGTGAGCATGCTCTTCTCTGATCCTCACAGTGTCAAGGTCTCTTGGAGGAACACATTGACACATGGCATTGTGAAGATATCGTGTGTGAGCACTGCTCGAATGCCCTTTGTTAAGAGACATGACAGGACATTCAAGTTGACTGATCCTTTCCCTGAGCACTGCCCTCCTGGAGAATTTGTGAGAGAGATACCTTTGGCTACAAGGATTCCAGAAGATGCAAAGCTCGAAGCGTATTATGACGAGACTGGCACTGGACTGGAAATCATGGTCCCCAAGCACCGAGTTGGACCCGAAGAGCATGAAGTCCAGGTTTGCATGAGGCCCCCACACCTTGGTGAAAACGATCTTCTTTTATCATAGAACAGAAAACAGTTTAGTCTTTAGATCTTCCTGTGTCATGCCATGATATGCAGGAAAGTAACAAGTGATGCCATGGATATTTTGCTGCTAAACATTTAGCTGAAATTCCTTTCTCAGTAGTGTTGGTGATTTAGGCAAAAAAGTTACCACTTTGTTGATTCTCCCCTGTACTTTTTACACTAGCACCACTATATTGGAGATCTTGATTTCTATGGAACATGGCAAAGTTAAAATTCTGTATATATATCTGATGATCAAGTTCAACGGTTCATTACTCCATAATAATGTCGACAGCTACTTACGACTAGAAGTTCGGAACTGTGTTGTCAATTTCAGCAATTGTTTGTAATCGCTGTCTTAATCATTTCAATGTGCTGTACTACAATACTACTGGCTGGATCAGCTTTCAACTGAAACCAAAAACTCGATCCCA]
[+] EMBL AK120777 [CCGTCGTGGGGTATCGACCAGTTCGACATGCTTGATGTCGGTCTCGGCACGCAGACTTATGAGTCTGAGGTTGCGCTCACGCTTCCAAAGTTGACTGGCAATGGCAACACTGCGGTTGGCGTCGGTGCGAGGAAGTGTGCCAAGAGGGGGGACAGCATTTGGGGTGCATGGTTCTTCTTCAATCACTACTTCAAACCTGCACTTGTGGAAAAGCCGAAGGGCAAGGTGACACGGGACTCTTCTGGGAGCGTTTCGGGCTTTGAGAAGTCTGATCTTCGCCTTGATGTCTTCCTGGTGCAGCATGACATGGAGAACATGTACATGTGGGTTTTTAAGGAACGGCCTGACAATGCCCTCGGGAAGATGCAGCTCCGGAGCTTCATGAATGGGCATTCCAAGCATGGTGAGCCATCCTTTCCATTCAGTGCAGATAAGGGCTTTGCAAGGTCACACCGCATGCAACGAAAGCACTATCGAGGGCTGTCCAACCCACAATGCCTTCATGGGATAGAGATTGTGAGTTCACCAAATCTGTCAGCTGTTCCTGAAGCTGAAATGAAAAGGTGGGCGGAACTTACAGGAAGAGAACTTAATTTCTCAATTCCTCCTGAAGCAAGTGACTTTGAATCATGGAGGAATCTTCCAAGCACTGATTTCGAACTTGATAGGCCACTGCCACTGTCATCAAAGATTACACATGGCTCTCACAGTCACAAAAAGGCACTGAATGGTTCAGGTCTTAACCTTTCTACGCCACCATCATCAGACGATGGGATGGACCTTTCACCAAAATGCGCCAAGCGACGGAAGGACTTCTTTGCTCATGGTGCAGATGAGGATTGCGTGATGGCAAATAATTCTTGTTCTGACAGAGAGCAAGAGATAGAAGTTCACACAGGTGAGCCGTCATGGATGCATGAGTTCACTGGTGTAGCAAAACATGCAAGTGGACCTGTTACGGCTGCCAAGACAATATATGAGGACGATGAAGGCTACTTAATCATGGTGAGCATGCTCTTCTCTGATCCTCACAGTGTCAAGGTCTCTTGGAGGAACACATTGACACATGGCATTGTGAAGATATCGTGTGTGAGCACTGCTCGAATGCCCTTTGTTAAGAGACATGACAGGACATTCAAGTTGACTGATCCTTTCCCTGAGCACTGCCCTCCTGGAGAATTTGTGAGAGAGATACCTTTGGCTACAAGGATTCCAGAAGATGCAAAGCTCGAAGCGTATTATGACGAGACTGGCACTGGACTGGAAATCATGGTCCCCAAGCACCGAGTTGGACCCGAAGAGCATGAAGTCCAGGTTTGCATGAGGCCCCCACACCTTGGTGAAAACGATCTTCTTTTATCATAGAACAGAAAACAGTTTAGTCTTTAGATCTTCCTGTGTCATGCCATGATATGCAGGAAAGTAACAAGTGATGCCATGGATATTTTGCTGCTAAACATTTAGCTGAAATTCCTTTCTCAGTAGTGTTGGTGATTTAGGCAAAAAAGTTACCACTTTGTTGATTCTCCCCTGTACTTTTTACACTAGCACCACTATATTGGAGATCTTGATTTCTATGGAACATGGCAAAGTTAAAATTCTGTATATATATCTGATGATCAAGTTCAACGGTTCATTACTCCATAATAATGTCGACAGCTACTTACGACTAGAAGTTCGGAACTGTGTTGTCAATTTCAGCAATTGTTTGTAATCGCTGTCTTAATCATTTCAATGTGCTGTACTACAATACTACTGGCTGGATCAGCTTTCAACTGAAACCAAAAACTCGATCCCA]
[+] EMBL BP184943 [CCGTCGTGGGGTATCGACCAGTTCGACATGCTTGATGTCGGTCTCGGCACGCAGACTTATGAGTCTGAGGTTGCGCTCACGCTTCCAAAGTTGACTGGCAATGGCAACACTGCGGTTGGCGTCGGTGCGAGGAAGTGTGCCAAGAGGGGGGACAGCATTTGGGGTGCATGGTTCTTCTTCAATCACTACTTCAAACCTGCACTTGTGGAAAAGCCGAAGGGCAAGGTGACACGGGACTCTTCTGGGAGCGTTTCGGGCTTTGAGAAGTCTGATCTTCGCCTTGATGTCTTCCTGGTGCAGCATGACATGGAGAACATGTACATGTGGGTTTTTAAGGAACGGCCTGACAATGCCCTCGGGAAGATGCAGCTCCGGAGCTTCATGAATGGGCATTCCAAGCAT ]
consensusID : consensus_4077#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 336 fasta sequence
[AGAGGACGAGACAAGGGGGAACAGAAAACAGTTTAGTCTTTAGATCTTCCTGTGTCATGCCATGATATGCAGGAAAGTAACAAGTGATGCCATGGATATTTTGCTGCTAAACATTTAGCTGAAATTCCTTTCTCAGTAGTGTTGGTGATTTAGGCAAAAAAGTTACCACTTTGTTGATTCTCCCCTGTACTTTTTACACTAGCACCACTATATTGGAGATCTTGATTTCTATGGAACATGGCAAAGTTAAAATTCTGTATATATATCTGATGATCAGGTTCAACGGTTCATTACTCCATAATAATGTCGACAGCTACTTACGNCTAAAAAAAAAAA]
[-] EMBL CA760621 [AGAGGACGAGACAAGGGGGAACAGAAAACAGTTTAGTCTTTAGATCTTCCTGTGTCATGCCATGATATGCAGGAAAGTAACAAGTGATGCCATGGATATTTTGCTGCTAAACATTTAGCTGAAATTCCTTTCTCAGTAGTGTTGGTGATTTAGGCAAAAAAGTTACCACTTTGTTGATTCTCCCCTGTACTTTTTACACTAGCACCACTATATTGGAGATCTTGATTTCTATGGAACATGGCAAAGTTAAAATTCTGTATATATATCTGATGATCAGGTTCAACGGTTCATTACTCCATAATAATGTCGACAGCTACTTACGNCTAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4077#0 CCGTCGTGGGGTATCGACCAGTTCGACATGCTTGATGTCGGTCTCGGCACGCAGACTTAT 60
consensus_4077#1 ------------------------------------------------------------
consensus_4077#0 GAGTCTGAGGTTGCGCTCACGCTTCCAAAGTTGACTGGCAATGGCAACACTGCGGTTGGC 120
consensus_4077#1 ------------------------------------------------------------
consensus_4077#0 GTCGGTGCGAGGAAGTGTGCCAAGAGGGGGGACAGCATTTGGGGTGCATGGTTCTTCTTC 180
consensus_4077#1 ------------------------------------------------------------
consensus_4077#0 AATCACTACTTCAAACCTGCACTTGTGGAAAAGCCGAAGGGCAAGGTGACACGGGACTCT 240
consensus_4077#1 ------------------------------------------------------------
consensus_4077#0 TCTGGGAGCGTTTCGGGCTTTGAGAAGTCTGATCTTCGCCTTGATGTCTTCCTGGTGCAG 300
consensus_4077#1 ------------------------------------------------------------
consensus_4077#0 CATGACATGGAGAACATGTACATGTGGGTTTTTAAGGAACGGCCTGACAATGCCCTCGGG 360
consensus_4077#1 ------------------------------------------------------------
consensus_4077#0 AAGATGCAGCTCCGGAGCTTCATGAATGGGCATTCCAAGCATGGTGAGCCATCCTTTCCA 420
consensus_4077#1 ------------------------------------------------------------
consensus_4077#0 TTCAGTGCAGATAAGGGCTTTGCAAGGTCACACCGCATGCAACGAAAGCACTATCGAGGG 480
consensus_4077#1 ------------------------------------------------------------
consensus_4077#0 CTGTCCAACCCACAATGCCTTCATGGGATAGAGATTGTGAGTTCACCAAATCTGTCAGCT 540
consensus_4077#1 ------------------------------------------------------------
consensus_4077#0 GTTCCTGAAGCTGAAATGAAAAGGTGGGCGGAACTTACAGGAAGAGAACTTAATTTCTCA 600
consensus_4077#1 ------------------------------------------------------------
consensus_4077#0 ATTCCTCCTGAAGCAAGTGACTTTGAATCATGGAGGAATCTTCCAAGCACTGATTTCGAA 660
consensus_4077#1 ------------------------------------------------------------
consensus_4077#0 CTTGATAGGCCACTGCCACTGTCATCAAAGATTACACATGGCTCTCACAGTCACAAAAAG 720
consensus_4077#1 ------------------------------------------------------------
consensus_4077#0 GCACTGAATGGTTCAGGTCTTAACCTTTCTACGCCACCATCATCAGACGATGGGATGGAC 780
consensus_4077#1 ------------------------------------------------------------
consensus_4077#0 CTTTCACCAAAATGCGCCAAGCGACGGAAGGACTTCTTTGCTCATGGTGCAGATGAGGAT 840
consensus_4077#1 ------------------------------------------------------------
consensus_4077#0 TGCGTGATGGCAAATAATTCTTGTTCTGACAGAGAGCAAGAGATAGAAGTTCACACAGGT 900
consensus_4077#1 ------------------------------------------------------------
consensus_4077#0 GAGCCGTCATGGATGCATGAGTTCACTGGTGTAGCAAAACATGCAAGTGGACCTGTTACG 960
consensus_4077#1 ------------------------------------------------------------
consensus_4077#0 GCTGCCAAGACAATATATGAGGACGATGAAGGCTACTTAATCATGGTGAGCATGCTCTTC 1020
consensus_4077#1 ------------------------------------------------------------
consensus_4077#0 TCTGATCCTCACAGTGTCAAGGTCTCTTGGAGGAACACATTGACACATGGCATTGTGAAG 1080
consensus_4077#1 ------------------------------------------------------------
consensus_4077#0 ATATCGTGTGTGAGCACTGCTCGAATGCCCTTTGTTAAGAGACATGACAGGACATTCAAG 1140
consensus_4077#1 ------------------------------------------------------------
consensus_4077#0 TTGACTGATCCTTTCCCTGAGCACTGCCCTCCTGGAGAATTTGTGAGAGAGATACCTTTG 1200
consensus_4077#1 ------------------------------------------------------------
consensus_4077#0 GCTACAAGGATTCCAGAAGATGCAAAGCTCGAAGCGTATTATGACGAGACTGGCACTGGA 1260
consensus_4077#1 ------------------------------------------------------------
consensus_4077#0 CTGGAAATCATGGTCCCCAAGCACCGAGTTGGACCCGAAGAGCATGAAGTCCAGGTTTGC 1320
consensus_4077#1 ------------------------------------------------------------
consensus_4077#0 ATGAGGCCCCCACACCTTGGTGAAAACGATCTTCTTTTATCATAGAACAGAAAACAGTTT 1380
consensus_4077#1 --------------------AGAGGACGA------GACAAGGGGGAACAGAAAACAGTTT 34
** **** * ****************
consensus_4077#0 AGTCTTTAGATCTTCCTGTGTCATGCCATGATATGCAGGAAAGTAACAAGTGATGCCATG 1440
consensus_4077#1 AGTCTTTAGATCTTCCTGTGTCATGCCATGATATGCAGGAAAGTAACAAGTGATGCCATG 94
************************************************************
consensus_4077#0 GATATTTTGCTGCTAAACATTTAGCTGAAATTCCTTTCTCAGTAGTGTTGGTGATTTAGG 1500
consensus_4077#1 GATATTTTGCTGCTAAACATTTAGCTGAAATTCCTTTCTCAGTAGTGTTGGTGATTTAGG 154
************************************************************
consensus_4077#0 CAAAAAAGTTACCACTTTGTTGATTCTCCCCTGTACTTTTTACACTAGCACCACTATATT 1560
consensus_4077#1 CAAAAAAGTTACCACTTTGTTGATTCTCCCCTGTACTTTTTACACTAGCACCACTATATT 214
************************************************************
consensus_4077#0 GGAGATCTTGATTTCTATGGAACATGGCAAAGTTAAAATTCTGTATATATATCTGATGAT 1620
consensus_4077#1 GGAGATCTTGATTTCTATGGAACATGGCAAAGTTAAAATTCTGTATATATATCTGATGAT 274
************************************************************
consensus_4077#0 CAAGTTCAACGGTTCATTACTCCATAATAATGTCGACAGCTACTTACGACTAGAAGTTCG 1680
consensus_4077#1 CAGGTTCAACGGTTCATTACTCCATAATAATGTCGACAGCTACTTACGNCTAAAAAAAAA 334
** ********************************************* *** **
consensus_4077#0 GAACTGTGTTGTCAATTTCAGCAATTGTTTGTAATCGCTGTCTTAATCATTTCAATGTGC 1740
consensus_4077#1 AA---------------------------------------------------------- 336
*
consensus_4077#0 TGTACTACAATACTACTGGCTGGATCAGCTTTCAACTGAAACCAAAAACTCGATCCCA 1798
consensus_4077#1 ----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||