These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4080#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 660 fasta sequence [GCAGGAATTCGGCACGAGGCTCGATCTCGTAGTAGACATCGCTACACACACATATATATACATGCATTAATAACTAATCATCCGTCGATCGACGCCGGCCGGCGGCGACCGATCGATCGAGATGGCGAGAAGAGCGACCGCGCGCGGGGCTGGGCTGCCGGCGCCGTTCGTCGTCGTCGTCTCTGTGCTGCTGCTGCTGCTGGGATCGCTGCCGCTCCACGAGGTCGCGGCGGCGGAAGACGAAGATCAGATTGGTGGCGGTGGTGGGCTGGAACATGGTGCGCGCGGCCCCACTTGGCGGGGCTGCTGCAACCAGTATAAAGAGCGAGGGGAGCCAGGGGGTAGCTACACACGGAGAGGGAGGTTTGGACCCTGCTTTCCTACGCAGCCATGCCACAAACCAATACCATAGATGCCAGGCCCCAAGGGTGATCAAGATATATAGGGGGCGTACGTGACACTGATCGATCCGCACACCGTACTATACGTATTTTATCCCGTTATATATATACCGTTGGTTCCTTCGATCCGCTCTTCCTCCTCCTAATAAATCTTATTCTCTCCGTTAAAGTTGTCTCTTCCTAAACTCATTGTTAATGGCAATATTACGTACTCCCTCCGTATTTTAATGTATGACGCCGTTGACTTTTTAAGACCATT] [+] EMBL CA756508 [GCAGGAATTCGGCACGAGGCTCGATCTCGTAGTAGACATCGCTACACACACATATATATACATGCATTAATAACTAATCATCCGTCGATCGACGCCGGCCGGCGGCGACCGATCGATCGAGATGGCGAGAAGAGCGACCGCGCGCGGGGCTGGGCTGCCGGCGCCGTTCGTCGTCGTCGTCTCTGTGCTGCTGCTGCTGCTGGGATCGCTGCCGCTCCACGAGGTCGCGGCGGCGGAAGACGAAGATCAGATTGGTGGCGGTGGTGGGCTGGAACATGGTGCGCGCGGCCCCACTTGGCGGGGCTGCTGCAACCAGTATAAAGAGCGAGGGGAGCCAGGGGGTAGCTACACACGGAGAGGGAGGTTTGGACCCTGCTTTCCTACGCAGCCATGCCACAAACCAATACCATAGATGCCAGGCCCCAAGGGTGATCAAGATATATAGGGGGCGTACGTGACACTGATCGATCCGCACACCGTACTATACGTATTTTATCCCGTTATATATATACCGTTGGTTCCTTCGATCCGCTCTTCCTCCTCCTAATAAATCTTATTCTCTCCGTTAAAGTTGTCTCTTCCTA ] [+] EMBL AK062469 [ acatactcGCTCGATCTCGTAGTAGACATCGCTACACACACATATATATACATACATTAATAACTAATCATCCGTCGATCGACGCCGGCCGGCGGCGACCGATCGATCGAGATGGCGAGAAGAGCGACCGCGCGCGGGGCTGGGCTGCCGGCGCCGTTCGTCGTCGTCGTCTCTGTGCTGCTGCTGCTGCTGGGATCGCTGCCGCTCCACGAGGTCGCGGCGGCGGAAGACGAAGATCAGATTGGTGGCGGTGGTGGGCTGGAACATGGTGCGCGCGGCCCCACTTGGCGGGGCTGCTGCAACCAGTATAAAGAGCGAGGGGAGCCAGGGGGTAGCTACACAGGGAGAGGGAGGTTTGGACCTTGCATTCCTACGCAGCCATGCCACAAACCAATACCATAGATGCCAGGCACCAGTGGTGATCAGTATATATAGTGGGCGTACGTGACACTGATCGATACGCACA CGTACTATACGTA TATATACGGTTATATATATA CGTAGGTAC TCGAT CGCTCTCCCT CTCCTAAATAATC TA TCCCTCCGTT AAGTTGTC CTTCCGTAACTCATTGTTAATGGCAATATTACGTACTCCCTCCGTATTTTAATGTATGACGCCGTTGACTTTTTAAGACCATT] consensusID : consensus_4080#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 645 fasta sequence [CGCTCGATCTCGTAGTAGACATCGCCTACACACATATACATATATTAATAACTAATCGTCCGACCGATCGATCGAGATGGCGAGGAGAGCGACCGCGCGCGGGGCTGGGCTGCCGGCGCCGTTCGTCGTCATCGTCTCTGTACTGCTGCTGCTGCTGCTGGGATCGCTGCCGCTCCACGAGGTCGCGGCGGCGGAAGACGAAGATCAGATTGGTGGCGGTGGGCTGGAACATGGTGCAAGTGCGTTAAAACCAGACCGCGGCCCCCTTTGGCGGGGGTGCTGCAACCAGTATAAAGAGGGAGGTAGCTACACAGGGAGGGGGAGGTTTGGACCTTGCATTCCTACGCAGCCATGCCCCAAACCAATACCATAGATGCCATCATCATCACCACCAGTGGTGAGTATAGTGCGGGTGACACTGATCACGATAAGCACACGTACTATACGTATATACGGTTATATATAAATACATAGGCACATCTGCGAATAAATGTACTCGATCGCTCTCCCTCTCCTGGATAATACTCCCTCTATCCCAGAATATAGCAACCTAAGCCATCCTAGGTTGCTATATTCTAGGACGGAGGGAGTATATCCCTCCGTTAAGTTGTCCTTCCATCATTGTTAATGGCAATATTATATAAT] [+] EMBL AK063060 [CGCTCGATCTCGTAGTAGACATCGCCTACACACATATACATATATTAATAACTAATCGTCCGACCGATCGATCGAGATGGCGAGGAGAGCGACCGCGCGCGGGGCTGGGCTGCCGGCGCCGTTCGTCGTCATCGTCTCTGTACTGCTGCTGCTGCTGCTGGGATCGCTGCCGCTCCACGAGGTCGCGGCGGCGGAAGACGAAGATCAGATTGGTGGCGGTGGGCTGGAACATGGTGCAAGTGCGTTAAAACCAGACCGCGGCCCCCTTTGGCGGGGGTGCTGCAACCAGTATAAAGAGGGAGGTAGCTACACAGGGAGGGGGAGGTTTGGACCTTGCATTCCTACGCAGCCATGCCCCAAACCAATACCATAGATGCCATCATCATCACCACCAGTGGTGAGTATAGTGCGGGTGACACTGATCACGATAAGCACACGTACTATACGTATATACGGTTATATATAAATACATAGGCACATCTGCGAATAAATGTACTCGATCGCTCTCCCTCTCCTGGATAATACTCCCTCTATCCCAGAATATAGCAACCTAAGCCATCCTAGGTTGCTATATTCTAGGACGGAGGGAGTATATCCCTCCGTTAAGTTGTCCTTCCATCATTGTTAATGGCAATATTATATAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4080#0 GCAGGAATTCGGCACGAGGCTCGATCTCGTAGTAGACATCGCTACACACACATATATATA 60 consensus_4080#1 -----------------CGCTCGATCTCGTAGTAGACATCGCC-----TACACACATATA 38 ************************ *** * ***** consensus_4080#0 CATGCATTAATAACTAATCATCCGTCGATCGACGCCGGCCGGCGGCGACCGATCGATCGA 120 consensus_4080#1 CATATATTAATAACTAATCGTCCG-----------------------ACCGATCGATCGA 75 *** ************** **** ************* consensus_4080#0 GATGGCGAGAAGAGCGACCGCGCGCGGGGCTGGGCTGCCGGCGCCGTTCGTCGTCGTCGT 180 consensus_4080#1 GATGGCGAGGAGAGCGACCGCGCGCGGGGCTGGGCTGCCGGCGCCGTTCGTCGTCATCGT 135 ********* ********************************************* **** consensus_4080#0 CTCTGT---GCTGCTGCTGCTGCTGGGATCGCTGCCGCTCCACGAGGTCGCGGCGGCGGA 237 consensus_4080#1 CTCTGTACTGCTGCTGCTGCTGCTGGGATCGCTGCCGCTCCACGAGGTCGCGGCGGCGGA 195 ****** *************************************************** consensus_4080#0 AGACGAAGATCAGATTGGTGGCGGTGGTGGGCTGGAACATGGTGCG-------------- 283 consensus_4080#1 AGACGAAGATCAGATTGGTGGCGGTG---GGCTGGAACATGGTGCAAGTGCGTTAAAACC 252 ************************** **************** consensus_4080#0 ----CGCGGCCCCACTTGGCGGGGCTGCTGCAACCAGTATAAAGAGCGAGGGGAGCCAGG 339 consensus_4080#1 AGACCGCGGCCCCCTTTGGCGGGGGTGCTGCAACCAGTATAAAGAG------------GG 300 ********* ********* ********************* ** consensus_4080#0 GGGTAGCTACACACGGAGAGGGAGGTTTGGACCCTGCTTTCCTACGCAGCCATGCCACAA 399 consensus_4080#1 AGGTAGCTACACAGGGAGGGGGAGGTTTGGACCTTGCATTCCTACGCAGCCATGCCCCAA 360 ************ **** ************** *** ****************** *** consensus_4080#0 ACCAATACCATAGATGCCAGGCCCCAAGGGTGATCAAGATATATAGGGGGCGTACGTGAC 459 consensus_4080#1 ACCAATACCATAGATGCCAT-CATCATCACCACCAGTGGTGAGTATAGTGCGG--GTGAC 417 ******************* * ** * * ** * *** ***** consensus_4080#0 ACTGATC--GATCCGCACACCGTACTATACGTATTTTATCCCGTTATATATATAC-CGTT 516 consensus_4080#1 ACTGATCACGATAAGCACAC-GTACTATACGTAT---ATACGGTTATATATAAATACATA 473 ******* *** ****** ************* ** * ********** * * * consensus_4080#0 GGTTCCTTCG-----------ATCCGCTCTTCCTCCTCCTAATAAATCTTATTCTCTCCG 565 consensus_4080#1 GGCACATCTGCGAATAAATGTACTCGATCGCTCTCCCTCTCCTGGATAATACTCCCTCTA 533 ** * * * * ** ** **** ** * ** ** ** *** consensus_4080#0 TTAAAGT-TGTCTCTTCCTAAACTCATTGTTAATGGCAATATT---------ACGTACTC 615 consensus_4080#1 TCCCAGAATATAGCAACCTAAGC-CATCCTAGGTTGCTATATTCTAGGACGGAGGGAGTA 592 * ** * * * ***** * *** * * ** ***** * * * * consensus_4080#0 CCTCCGTATTTTAATGTATGACGCCGTTGACTTTTTAAGACCATT--------- 660 consensus_4080#1 TATCCCTCCGTTAAGTTGTCCTTCCATC-ATTGTTAATGGCAATATTATATAAT 645 *** * **** * * ** * * * ** * * * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||