These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4081#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 943 fasta sequence [TCGAGGTCGAGGCTGCGTGGGTGTGCGACGTCGGGGATGAGCTGCAACGGCTGCCGCGTGCTGCGGAAGGGGTGCAGCGAGGGGTGCGTGTTGCGGCCGTGCCTGCAGTGGATCGACGGCGCCGAGGCGCAGGGCCACGCCACCGTGTTCGTCGCCAAGTTCTTTGGCCGCGCCGGCCTCATGTCCTTCCTCACCGCCGTCCCCGAGCCGCAGCGCGCAGCGGTGTTCCAGTCGCTGCTGTACGAGGCGGCGGGGAGGACGATCAACCCGGTGGGCGGCGCGGTCGGGCTGCTCTCCGGCGGGAGCTGGCACCTCTGCCAGGCGGCGGTCGACACCGTGCTGCGCGGCGGAGGCATCCAACCGCTGCCGGACCAGGTCGACGCCGCCGCCGCCGGTGGCCGCGACGTGTTCGCCTCCACGGCGAGGCGCGCCATGGGCGGGTGCTCCACGTTCTCGACGGCGAAGCGGTCGACGACGACGACGACGACCAAGAACCCCGGTACTCCGCATGACGCCGCCGCCGCGGCGCCCCAGCCGGAACCGTCGTGCGACCTCGGCCTGTGGCTCAGCCCCGGCTCCCCGCCGGCGCCCGGGGACCGGCGATCCGGCGGCAGGCGGGCCGACACGCCGTCGATGAACTCCGAGGGATCCGTCACGACGTGCGGCGTCGTCGGCGACGGCGAGAGGGAGCCCGAGCTGCTGAATCTTTTTGTCTAGGCTAGCTAGCTAATTAACCTGCTCAATTCTCATATGCTTTCTTTGCTGCATCCCGGCGAACTCTTTGGTAGCCTCTCGCCGGCGAGGTATCCCTTAGCCATTTTTTGGCCGTGTAAAAGTCGACGGTGCGCGTGCACTGCTTCTACTTGACTCTTTACAGTACCTTATGTTTTTTTCTCCCCCTACTTTGTTAGCATCAAAACGTCGAATAAAAGCGAACAGATTA] [+] EMBL AK069813 [TCGAGGTCGAGGCTGCGTGGGTGTGCGACGTCGGGGATGAGCTGCAACGGCTGCCGCGTGCTGCGGAAGGGGTGCAGCGAGGGGTGCGTGTTGCGGCCGTGCCTGCAGTGGATCGACGGCGCCGAGGCGCAGGGCCACGCCACCGTGTTCGTCGCCAAGTTCTTTGGCCGCGCCGGCCTCATGTCCTTCCTCACCGCCGTCCCCGAGCCGCAGCGCGCAGCGGTGTTCCAGTCGCTGCTGTACGAGGCGGCGGGGAGGACGATCAACCCGGTGGGCGGCGCGGTCGGGCTGCTCTCCGGCGGGAGCTGGCACCTCTGCCAGGCGGCGGTCGACACCGTGCTGCGCGGCGGAGGCATCCAACCGCTGCCGGACCAGGTCGACGCCGCCGCCGCCGGTGGCCGCGACGTGTTCGCCTCCACGGCGAGGCGCGCCATGGGCGGGTGCTCCACGTTCTCGACGGCGAAGCGGTCGACGACGACGACGACGACCAAGAACCCCGGTACTCCGCATGACGCCGCCGCCGCGGCGCCCCAGCCGGAACCGTCGTGCGACCTCGGCCTGTGGCTCAGCCCCGGCTCCCCGCCGGCGCCCGGGGACCGGCGATCCGGCGGCAGGCGGGCCGACACGCCGTCGATGAACTCCGAGGGATCCGTCACGACGTGCGGCGTCGTCGGCGACGGCGAGAGGGAGCCCGAGCTGCTGAATCTTTTTGTCTAGGCTAGCTAGCTAATTAACCTGCTCAATTCTCATATGCTTTCTTTGCTGCATCCCGGCGAACTCTTTGGTAGCCTCTCGCCGGCGAGGTATCCCTTAGCCATTTTTTGGCCGTGTAAAAGTCGACGGTGCGCGTGCACTGCTTCTACTTGACTCTTTACAGTACCTTATGTTTTTTTCTCCCCCTACTTTGTTAGCATCAAAACGTCGAATAAAAGCGAACAGATTA] [+] EMBL CA756495 [ GGTGTGCGACGTCGGGGATGAGCTGCAACGGCTGCCGCGTGCTGCGGAAGGGGTGCAGCGAGGGGTGCGTGTTGCGGCCGTGCCTGCAGTGGATCGACGGCGCCGAGGCGCAGGGCCACGCCACCGTGTTCGTCGCCAAGTTCTTTGGCCGCGCCGGCCTCATGTCCTTCCTCACCGCCGTCCCCGAGCCGCAGCGCGCAGCGGTGTTCCAGTCGCTGCTGTACGAGGCGGCGGGGAGGACGATCAACCCGGTGGGCGGCGCGGTCGGGCTGCTCTCCGGCGGGAGCTGGCACCTCTGCCAGGCGGCGGTCGACACCGTGCTGCGCGGCGGAGGCATCCAACCGCTGCCGGACCAGGTCGACGCCGCCGCCGCCGGTGGCCGCGACGTGTTCGCCTCCACGGCGAGGCGCGCCATGGGCGGGTGCTCCACGTTCTCGACGGCGAAGCGGTCGACGACGACGACGACGACCAAGAACCCNCGTACTCCGCATGACGCCGCCGCCGCGGCGCCCCAGCCGGGACCGTCGTGCGACCTCCGGCTGTGGCTCA ACCCGGCTCCCCGCCGGNGCCCGGGGACCGGCGATCCGGCGGCAGGGGGGCCGAC ] consensusID : consensus_4081#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence [CCCCTCGCTCTCCCTGCTCCGGTATAGCTAGTTGAGCTCTGATCGATCAGGTTGCATGAGACGGAGAAGCTGAGTGAGGCTAGGGTGGTTGGTTGTGATCATCACCATGAGCTGCAACGGTTGCCGGGTGCTGCGGAAGGGGTGCAGTGACGGCTGCGTGCTGCGGCCATGCCTGCAGTGGATCGACGCCGCCGACGCGCAGGGCCACGCCACCGTCTTCGTCGCCAAGTTCTTCGGCCGCGCCGGACTCCTCTCCTTCATCTCCGCTGTCCCCGAGGCGCAGCGACCTGCGTTGTTCCAGTCGCTGCTGTACGAAGCAGCGGGGCGAACCATCAATCCGGTGCACGGCGCGGTGGGCCTCCTCTGGACGGGGAACTGGCCCCTCTGCCAGGCCGCTGTCGAGACCGTGCTGCGTGGAGGCGCCATCGGCCCTCTGCCGGAGCTCGGCGGGGCCTGCGGCGGCGCTGGCGGGGACCTCTACGGCGCCGCCAAGCGCAACGGCGGCTGGTCTACCTTCTCCACTGCGAAGCGGGTGAGGAAGGCCGAGGTACCTGAAGCCCCGTCGTGCGACCTAGGCCTGTGCCTCAGCCCCGGCTCTCCGCCGGCGGTGGGGGAGAGGAAA] [+] EMBL AK071624 [CCCCTCGCTCTCCCTGCTCCGGTATAGCTAGTTGAGCTCTGATCGATCAGGTTGCATGAGACGGAGAAGCTGAGTGAGGCTAGGGTGGTTGGTTGTGATCATCACCATGAGCTGCAACGGTTGCCGGGTGCTGCGGAAGGGGTGCAGTGACGGCTGCGTGCTGCGGCCATGCCTGCAGTGGATCGACGCCGCCGACGCGCAGGGCCACGCCACCGTCTTCGTCGCCAAGTTCTTCGGCCGCGCCGGACTCCTCTCCTTCATCTCCGCTGTCCCCGAGGCGCAGCGACCTGCGTTGTTCCAGTCGCTGCTGTACGAAGCAGCGGGGCGAACCATCAATCCGGTGCACGGCGCGGTGGGCCTCCTCTGGACGGGGAACTGGCCCCTCTGCCAGGCCGCTGTCGAGACCGTGCTGCGTGGAGGCGCCATCGGCCCTCTGCCGGAGCTCGGCGGGGCCTGCGGCGGCGCTGGCGGGGACCTCTACGGCGCCGCCAAGCGCAACGGCGGCTGGTCTACCTTCTCCACTGCGAAGCGGGTGAGGAAGGCCGAGGTACCTGAAGCCCCGTCGTGCGACCTAGGCCTGTGCCTCAGCCCCGGCTCTCCGCCGGCGGTGGGGGAGAGGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4081#0 ------------------------------------------------------------ consensus_4081#1 CCCCTCGCTCTCCCTGCTCCGGTATAGCTAGTTGAGCTCTGATCGATCAGGTTGCATGAG 60 consensus_4081#0 --------TCGAGGTCGAGGCTGCGTGGGTG--TGCGACGTCGGGGATGAGCTGCAACGG 50 consensus_4081#1 ACGGAGAAGCTGAGTGAGGCTAGGGTGGTTGGTTGTGATCATCACCATGAGCTGCAACGG 120 * ** * * **** ** ** ** ************** consensus_4081#0 CTGCCGCGTGCTGCGGAAGGGGTGCAGCGAGGGGTGCGTGTTGCGGCCGTGCCTGCAGTG 110 consensus_4081#1 TTGCCGGGTGCTGCGGAAGGGGTGCAGTGACGGCTGCGTGCTGCGGCCATGCCTGCAGTG 180 ***** ******************** ** ** ****** ******* *********** consensus_4081#0 GATCGACGGCGCCGAGGCGCAGGGCCACGCCACCGTGTTCGTCGCCAAGTTCTTTGGCCG 170 consensus_4081#1 GATCGACGCCGCCGACGCGCAGGGCCACGCCACCGTCTTCGTCGCCAAGTTCTTCGGCCG 240 ******** ****** ******************** ***************** ***** consensus_4081#0 CGCCGGCCTCATGTCCTTCCTCACCGCCGTCCCCGAGCCGCAGCGCGCAGCGGTGTTCCA 230 consensus_4081#1 CGCCGGACTCCTCTCCTTCATCTCCGCTGTCCCCGAGGCGCAGCGACCTGCGTTGTTCCA 300 ****** *** * ****** ** **** ********* ******* * *** ******* consensus_4081#0 GTCGCTGCTGTACGAGGCGGCGGGGAGGACGATCAACCCGGTGGGCGGCGCGGTCGGGCT 290 consensus_4081#1 GTCGCTGCTGTACGAAGCAGCGGGGCGAACCATCAATCCGGTGCACGGCGCGGTGGGCCT 360 *************** ** ****** * ** ***** ****** ********* ** ** consensus_4081#0 GCTCTCCGGCGGGAGCTGGCACCTCTGCCAGGCGGCGGTCGACACCGTGCTGCGCGGCGG 350 consensus_4081#1 CCTCTGGACGGGGAACTGGCCCCTCTGCCAGGCCGCTGTCGAGACCGTGCTGCGTGGAGG 420 **** **** ***** ************ ** ***** *********** ** ** consensus_4081#0 AGGCATCCAACCGCTGCCGGACCAGGTCGACGCCGCCGCCGCCGGTGGCCGCGACGTGTT 410 consensus_4081#1 CGCCATCGGCCCTCTGCCGGAGCTCGGCGGGGCCTGCGGCGGCGCTGGCGGGGACCTCTA 480 * **** ** ******** * * ** *** ** ** ** **** * *** * * consensus_4081#0 CGCCTCCACGGCGAGGCGCGCCATGGGCGGGTGCTCCACGTTCTCGACGGCGAAGCGGTC 470 consensus_4081#1 CGGCGCC---GCCAAGCGCAAC---GGCGGCTGGTCTACCTTCTCCACTGCGAAGCGGGT 534 ** * ** ** * **** * ***** ** ** ** ***** ** ********* consensus_4081#0 GACGACGACGACGACGACCAAGAACCCCGGTACTCCGCATGACGCCGCCGCCGCGGCGCC 530 consensus_4081#1 GAGGAAGGC-----CGA-----------GGTACC-----TGAAGCC-------------- 559 ** ** * * *** ***** *** *** consensus_4081#0 CCAGCCGGAACCGTCGTGCGACCTCGGCCTGTGGCTCAGCCCCGGCTCCCCGCCGGCGCC 590 consensus_4081#1 ----------CCGTCGTGCGACCTAGGCCTGTGCCTCAGCCCCGGCTCTCCGCCGGCGGT 609 ************** ******** ************** ********* consensus_4081#0 CGGGGACCGGCGATCCGGCGGCAGGCGGGCCGACACGCCGTCGATGAACTCCGAGGGATC 650 consensus_4081#1 GGGGGAGAGGAAA----------------------------------------------- 622 ***** ** * consensus_4081#0 CGTCACGACGTGCGGCGTCGTCGGCGACGGCGAGAGGGAGCCCGAGCTGCTGAATCTTTT 710 consensus_4081#1 ------------------------------------------------------------ consensus_4081#0 TGTCTAGGCTAGCTAGCTAATTAACCTGCTCAATTCTCATATGCTTTCTTTGCTGCATCC 770 consensus_4081#1 ------------------------------------------------------------ consensus_4081#0 CGGCGAACTCTTTGGTAGCCTCTCGCCGGCGAGGTATCCCTTAGCCATTTTTTGGCCGTG 830 consensus_4081#1 ------------------------------------------------------------ consensus_4081#0 TAAAAGTCGACGGTGCGCGTGCACTGCTTCTACTTGACTCTTTACAGTACCTTATGTTTT 890 consensus_4081#1 ------------------------------------------------------------ consensus_4081#0 TTTCTCCCCCTACTTTGTTAGCATCAAAACGTCGAATAAAAGCGAACAGATTA 943 consensus_4081#1 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||