These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_409#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2140 fasta sequence [GGCCCATACATATACTCCTACTTTTAAGTAGAACTAAAGAGAAAAAAAAAGGAAGGAAAAAAAAAAGAGAAGAAGCTCGTCGTCAATCGTCATCGCTGGTCACAAGTCCTCTCTTCCTTGTACTCTCAAGTCCTCTCTTCCTCCCCCGCCCTCCGATCCCCAAGTGCCCTTGTGCTACCCCGCGCCGCGCGCCGTCACAGTCGACGCTTCCGCCGCCGCCGCCGTCGTCGTCGGCGGCAGGCAGCTCATGGAGGTTGCTACTCCCAATAATAACGCTCACTAGGTCATTGATGAACTAGTATCCAATGATGATGATGACGATAGGCTCAGCGCCCTCCCAAATGAAATTTCGATCTACATCCTCCAACGCCTGCCGCTGCGCACTTCAGCACAGACCACCATCCTCGCAAGGCGATGGACCCATCTTTTCCCATCCATGACACATCTCAAAATAGATATCAATGAATTTGTACCACGCATCCTCACTAGGCACAATGTGGCTCGAAGCATGGCCATGTCGTGGTACACCCAAGCACTAAGGACATTGCTAGCTCCTACAATTGACCCTGATCGGACCATAAGGACCATGCATCTACGCTTCTACCCCACAGACTCATACCTGCTCTCCATTGCCCGCATGGTCGACGATGCGGTTCAGAGTGCCAGTGCCAGCAAGATTGAGGTCCTTGACTTTGCCATTCTGAATGAGGTGTCCGAGGTGCACTGCACCGAGAAACAGATGTCACGATACGGGCGACGCTTCATGTCCTTCTTTCAGGCTTGCCCCAATGGATTCAGGTGCCTAACAAGCCTCTCTCTATGGGCCCTCAGGTTTCGGGATTCAGATATCCCAAGCCTACTAGGCTCCTGCCACCAGCTGCAGCACCTCCTTCTACGGGCTTTGCGATAGCGGTCGCAACTCTGTGCTCAAGATTGACGCATCACCATGCTCACAGCTCAGGACATTGAGGATGATCTTCTGCAGTTACATCAAGGTTGAACTCGTCCACGTTCCAAAGCTTGAATCAGTGGATTGTGATACATGGGTGGGTGTCAACCCTCCTGTTTATTTTGGTTGCGTCCCACTGCTTGACAAGATACGCTTCTCTTCCACCTGCCTTAAGATGCAGCAACCATTCGTTCTGAGCAGCTGGCTGTCCACTGTGCCAGCTCTAACTAGTTTGCATCTGGACTAACAATATGAGATGGTTTGGATCATGCCAGAAGAGCCGAAGAAACTATTCCCCATATTTCGCAATCTTAAGGATGTATATCTTTACAACATTAGTAATGACAGTGGCCTCGACTGGACACTGTTTGTCCTTGAAGGCGCACCCTCCCTCAAGAGTTTTCATGTTAAGATATCTCACCACATATGTGGGGGGGATGGTTTTGAGCACAATGCTGGCAGTAGTAATGTTGTGTGGGAAGCATCATCTGACATCATCAAGCATAAAAACTTGAGGTTGTTGGATATAATAGGCTTTGAGGCAGAAGAGAATCTGATCAAGTACATAAGGCTCGCCATTCAGCGAGCTATCGCTTTACAGAGAATTCACTTGCATGAGAAGGAACCATGTGAAGACTGCGATGATATTTATCTCAATACGCCATCTCTGTCCAGAACTAGATTCCCTAACAATGAGCAAGAGAAGGATCTACTAAGAGAGCAACTCCTGCAGGGATTCTCATCGTCTATAGAAATAATAATAGGTTGTTACTAGTAATTGTTAGATTTTCTTTTCATGCCAGTAATTGTTCTAAACATGAAAATTTTGAATTTTGATATTCTTATATCATGGGGTTCAGAATGCAAAGTTTCCTGTAATTTCAAAATTCTTTACATTATTGATTCTAAAATCCCAAAATTTGAAATGCCAAGCAGGGGAAGACTGATTTTTTTCGGGCACTCAGTGCCACACAGGAGTCATCTGAAGGTGATGGCGTAGAAGATTTGAAGTTAGCTTGGTGGTGACATGGAAGGTTTCTCTTTACGTAGAATTGACTACTACCTTTACCAACGGTATATAAGAATTTCTCTCTTAACTTACAGCGCACAAGAACTTTATTTGGGTCATATGGTACATTTCTTTGTTAAATCCGGACATGTACTATGGCGTTGTTCTGATATTATGAGGTG] [+] EMBL AK105734 [GGCCCATACATATACTCCTACTTTTAAGTAGAACTAAAGAGAAAAAAAAAGGAAGGAAAAAAAAAAGAGAAGAAGCTCGTCGTCAATCGTCATCGCTGGTCACAAGTCCTCTCTTCCTTGTACTCTCAAGTCCTCTCTTCCTCCCCCGCCCTCCGATCCCCAAGTGCCCTTGTGCTACCCCGCGCCGCGCGCCGTCACAGTCGACGCTTCCGCCGCCGCCGCCGTCGTCGTCGGCGGCAGGCAGCTCATGGAGGTTGCTACTCCCAATAATAACGCTCACTAGGTCATTGATGAACTAGTATCCAATGATGATGATGACGATAGGCTCAGCGCCCTCCCAAATGAAATTTCGATCTACATCCTCCAACGCCTGCCGCTGCGCACTTCAGCACAGACCACCATCCTCGCAAGGCGATGGACCCATCTTTTCCCATCCATGACACATCTCAAAATAGATATCAATGAATTTGTACCACGCATCCTCACTAGGCACAATGTGGCTCGAAGCATGGCCATGTCGTGGTACACCCAAGCACTAAGGACATTGCTAGCTCCTACAATTGACCCTGATCGGACCATAAGGACCATGCATCTACGCTTCTACCCCACAGACTCATACCTGCTCTCCATTGCCCGCATGGTCGACGATGCGGTTCAGAGTGCCAGTGCCAGCAAGATTGAGGTCCTTGACTTTGCCATTCTGAATGAGGTGTCCGAGGTGCACTGCACCGAGAAACAGATGTCACGATACGGGCGACGCTTCATGTCCTTCTTTCAGGCTTGCCCCAATGGATTCAGGTGCCTAACAAGCCTCTCTCTATGGGCCCTCAGGTTTCGGGATTCAGATATCCCAAGCCTACTAGGCTCCTGCCACCAGCTGCAGCACCTCCTTCTACGGGCTTTGCGATAGCGGTCGCAACTCTGTGCTCAAGATTGACGCATCACCATGCTCACAGCTCAGGACATTGAGGATGATCTTCTGCAGTTACATCAAGGTTGAACTCGTCCACGTTCCAAAGCTTGAATCAGTGGATTGTGATACATGGGTGGGTGTCAACCCTCCTGTTTATTTTGGTTGCGTCCCACTGCTTGACAAGATACGCTTCTCTTCCACCTGCCTTAAGATGCAGCAACCATTCGTTCTGAGCAGCTGGCTGTCCACTGTGCCAGCTCTAACTAGTTTGCATCTGGACTAACAATATGAGATGGTTTGGATCATGCCAGAAGAGCCGAAGAAACTATTCCCCATATTTCGCAATCTTAAGGATGTATATCTTTACAACATTAGTAATGACAGTGGCCTCGACTGGACACTGTTTGTCCTTGAAGGCGCACCCTCCCTCAAGAGTTTTCATGTTAAGATATCTCACCACATATGTGGGGGGGATGGTTTTGAGCACAATGCTGGCAGTAGTAATGTTGTGTGGGAAGCATCATCTGACATCATCAAGCATAAAAACTTGAGGTTGTTGGATATAATAGGCTTTGAGGCAGAAGAGAATCTGATCAAGTACATAAGGCTCGCCATTCAGCGAGCTATCGCTTTACAGAGAATTCACTTGCATGAGAAGGAACCATGTGAAGACTGCGATGATATTTATCTCAATACGCCATCTCTGTCCAGAACTAGATTCCCTAACAATGAGCAAGAGAAGGATCTACTAAGAGAGCAACTCCTGCAGGGATTCTCATCGTCTATAGAAATAATAATAGGTTGTTACTAGTAATTGTTAGATTTTCTTTTCATGCCAGTAATTGTTCTAAACATGAAAATTTTGAATTTTGATATTCTTATATCATGGGGTTCAGAATGCAAAGTTTCCTGTAATTTCAAAATTCTTTACATTATTGATTCTAAAATCCCAAAATTTGAAATGCCAAGCAGGGGAAGACTGATTTTTTTCGGGCACTCAGTGCCACACAGGAGTCATCTGAAGGTGATGGCGTAGAAGATTTGAAGTTAGCTTGGTGGTGACATGGAAGGTTTCTCTTTACGTAGAATTGACTACTACCTTTACCAACGGTATATAAGAATTTCTCTCTTAACTTACAGCGCACAAGAACTTTATTTGGGTCATATGGTACATTTCTTTGTTAAATCCGGACATGTACTATGGCGTTGTTCTGATATTATGAGGTG] consensusID : consensus_409#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence [GAAGGCGCACCCTCCCTCAAGAGTNTTCATGTTAAGATATCTCACCACATATGTGGGGGGGATGGTTTTGAGCACAATGCTGGCAGTAGTAATGTTGTGTGGGAAGCATCATCTGACATCATCAAGCATAAAAACTTGAGGTTGTTGGATATAATAGGCTNTGAGACAGAAGAGAATCTGATCAAGTACATAAGGCTCGCCATTCAGCGAGCTATCGCTTTACAGAGAATTCACTTGCATGAGAAGGAACCATGTGAAGACTGCGATGATATTTATCTCAATACGCCATCTCTGTCCAGAACTAGATTCCCTAACAATGAGCAAGAGAAGGATCTACTAAGAGAGCAACTCCTGCAGGGATTCTCATNGTCTATAGAAATAATAATAGGGGAAGACTGATTTTTTTTCGGGCAGTCAGTGCCACACAGGAGTCATCTGAAGGTGATGGCGTAGAAGATTTAAAGTTAGCTTGGTGGTGACATGGAAGGTTTCTCTTTACGTAGAATTGATTACTACCTTTACCAACGGTATATAAGAATTTCTCTCTTAACTTACAGCGCACAAGAACTTTATTTGGGTCATATGGTACATTTCTTTGTTAAATCCGGACATGTACTATGGCGTTGTTCTGATATTATGAGGTGATTGTCTTGTATTTCCCCCTTATTTTGTGTATCGCTGTAAAAAAAAAAAA] [-] EMBL CA760106 [GAAGGCGCACCCTCCCTCAAGAGTNTTCATGTTAAGATATCTCACCACATATGTGGGGGGGATGGTTTTGAGCACAATGCTGGCAGTAGTAATGTTGTGTGGGAAGCATCATCTGACATCATCAAGCATAAAAACTTGAGGTTGTTGGATATAATAGGCTNTGAGACAGAAGAGAATCTGATCAAGTACATAAGGCTCGCCATTCAGCGAGCTATCGCTTTACAGAGAATTCACTTGCATGAGAAGGAACCATGTGAAGACTGCGATGATATTTATCTCAATACGCCATCTCTGTCCAGAACTAGATTCCCTAACAATGAGCAAGAGAAGGATCTACTAAGAGAGCAACTCCTGCAGGGATTCTCATNGTCTATAGAAATAATAATAGGGGAAGACTGATTTTTTTTCGGGCAGTCAGTGCCACACAGGAGTCATCTGAAGGTGATGGCGTAGAAGATTTAAAGTTAGCTTGGTGGTGACATGGAAGGTTTCTCTTTACGTAGAATTGATTACTACCTTTACCAACGGTATATAAGAATTTCTCTCTTAACTTACAGCGCACAAGAACTTTATTTGGGTCATATGGTACATTTCTTTGTTAAATCCGGACATGTACTATGGCGTTGTTCTGATATTATGAGGTGATTGTCTTGTATTTCCCCCTTATTTTGTGTATCGCTGTAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_409#0 GGCCCATACATATACTCCTACTTTTAAGTAGAACTAAAGAGAAAAAAAAAGGAAGGAAAA 60 consensus_409#1 ------------------------------------------------------------ consensus_409#0 AAAAAAGAGAAGAAGCTCGTCGTCAATCGTCATCGCTGGTCACAAGTCCTCTCTTCCTTG 120 consensus_409#1 ------------------------------------------------------------ consensus_409#0 TACTCTCAAGTCCTCTCTTCCTCCCCCGCCCTCCGATCCCCAAGTGCCCTTGTGCTACCC 180 consensus_409#1 ------------------------------------------------------------ consensus_409#0 CGCGCCGCGCGCCGTCACAGTCGACGCTTCCGCCGCCGCCGCCGTCGTCGTCGGCGGCAG 240 consensus_409#1 ------------------------------------------------------------ consensus_409#0 GCAGCTCATGGAGGTTGCTACTCCCAATAATAACGCTCACTAGGTCATTGATGAACTAGT 300 consensus_409#1 ------------------------------------------------------------ consensus_409#0 ATCCAATGATGATGATGACGATAGGCTCAGCGCCCTCCCAAATGAAATTTCGATCTACAT 360 consensus_409#1 ------------------------------------------------------------ consensus_409#0 CCTCCAACGCCTGCCGCTGCGCACTTCAGCACAGACCACCATCCTCGCAAGGCGATGGAC 420 consensus_409#1 ------------------------------------------------------------ consensus_409#0 CCATCTTTTCCCATCCATGACACATCTCAAAATAGATATCAATGAATTTGTACCACGCAT 480 consensus_409#1 ------------------------------------------------------------ consensus_409#0 CCTCACTAGGCACAATGTGGCTCGAAGCATGGCCATGTCGTGGTACACCCAAGCACTAAG 540 consensus_409#1 ------------------------------------------------------------ consensus_409#0 GACATTGCTAGCTCCTACAATTGACCCTGATCGGACCATAAGGACCATGCATCTACGCTT 600 consensus_409#1 ------------------------------------------------------------ consensus_409#0 CTACCCCACAGACTCATACCTGCTCTCCATTGCCCGCATGGTCGACGATGCGGTTCAGAG 660 consensus_409#1 ------------------------------------------------------------ consensus_409#0 TGCCAGTGCCAGCAAGATTGAGGTCCTTGACTTTGCCATTCTGAATGAGGTGTCCGAGGT 720 consensus_409#1 ------------------------------------------------------------ consensus_409#0 GCACTGCACCGAGAAACAGATGTCACGATACGGGCGACGCTTCATGTCCTTCTTTCAGGC 780 consensus_409#1 ------------------------------------------------------------ consensus_409#0 TTGCCCCAATGGATTCAGGTGCCTAACAAGCCTCTCTCTATGGGCCCTCAGGTTTCGGGA 840 consensus_409#1 ------------------------------------------------------------ consensus_409#0 TTCAGATATCCCAAGCCTACTAGGCTCCTGCCACCAGCTGCAGCACCTCCTTCTACGGGC 900 consensus_409#1 ------------------------------------------------------------ consensus_409#0 TTTGCGATAGCGGTCGCAACTCTGTGCTCAAGATTGACGCATCACCATGCTCACAGCTCA 960 consensus_409#1 ------------------------------------------------------------ consensus_409#0 GGACATTGAGGATGATCTTCTGCAGTTACATCAAGGTTGAACTCGTCCACGTTCCAAAGC 1020 consensus_409#1 ------------------------------------------------------------ consensus_409#0 TTGAATCAGTGGATTGTGATACATGGGTGGGTGTCAACCCTCCTGTTTATTTTGGTTGCG 1080 consensus_409#1 ------------------------------------------------------------ consensus_409#0 TCCCACTGCTTGACAAGATACGCTTCTCTTCCACCTGCCTTAAGATGCAGCAACCATTCG 1140 consensus_409#1 ------------------------------------------------------------ consensus_409#0 TTCTGAGCAGCTGGCTGTCCACTGTGCCAGCTCTAACTAGTTTGCATCTGGACTAACAAT 1200 consensus_409#1 ------------------------------------------------------------ consensus_409#0 ATGAGATGGTTTGGATCATGCCAGAAGAGCCGAAGAAACTATTCCCCATATTTCGCAATC 1260 consensus_409#1 ------------------------------------------------------------ consensus_409#0 TTAAGGATGTATATCTTTACAACATTAGTAATGACAGTGGCCTCGACTGGACACTGTTTG 1320 consensus_409#1 ------------------------------------------------------------ consensus_409#0 TCCTTGAAGGCGCACCCTCCCTCAAGAGTTTTCATGTTAAGATATCTCACCACATATGTG 1380 consensus_409#1 -----GAAGGCGCACCCTCCCTCAAGAGTNTTCATGTTAAGATATCTCACCACATATGTG 55 ************************ ****************************** consensus_409#0 GGGGGGATGGTTTTGAGCACAATGCTGGCAGTAGTAATGTTGTGTGGGAAGCATCATCTG 1440 consensus_409#1 GGGGGGATGGTTTTGAGCACAATGCTGGCAGTAGTAATGTTGTGTGGGAAGCATCATCTG 115 ************************************************************ consensus_409#0 ACATCATCAAGCATAAAAACTTGAGGTTGTTGGATATAATAGGCTTTGAGGCAGAAGAGA 1500 consensus_409#1 ACATCATCAAGCATAAAAACTTGAGGTTGTTGGATATAATAGGCTNTGAGACAGAAGAGA 175 ********************************************* **** ********* consensus_409#0 ATCTGATCAAGTACATAAGGCTCGCCATTCAGCGAGCTATCGCTTTACAGAGAATTCACT 1560 consensus_409#1 ATCTGATCAAGTACATAAGGCTCGCCATTCAGCGAGCTATCGCTTTACAGAGAATTCACT 235 ************************************************************ consensus_409#0 TGCATGAGAAGGAACCATGTGAAGACTGCGATGATATTTATCTCAATACGCCATCTCTGT 1620 consensus_409#1 TGCATGAGAAGGAACCATGTGAAGACTGCGATGATATTTATCTCAATACGCCATCTCTGT 295 ************************************************************ consensus_409#0 CCAGAACTAGATTCCCTAACAATGAGCAAGAGAAGGATCTACTAAGAGAGCAACTCCTGC 1680 consensus_409#1 CCAGAACTAGATTCCCTAACAATGAGCAAGAGAAGGATCTACTAAGAGAGCAACTCCTGC 355 ************************************************************ consensus_409#0 AGGGATTCTCATCGTCTATAGAAATAATAATAGGTTGTTACTAGTAATTGTTAGATTTTC 1740 consensus_409#1 AGGGATTCTCATNGTCTATAGAAATAATAATAGG-------------------------- 389 ************ ********************* consensus_409#0 TTTTCATGCCAGTAATTGTTCTAAACATGAAAATTTTGAATTTTGATATTCTTATATCAT 1800 consensus_409#1 ------------------------------------------------------------ consensus_409#0 GGGGTTCAGAATGCAAAGTTTCCTGTAATTTCAAAATTCTTTACATTATTGATTCTAAAA 1860 consensus_409#1 ------------------------------------------------------------ consensus_409#0 TCCCAAAATTTGAAATGCCAAGCAGGGGAAGACTGATTTTTTT-CGGGCACTCAGTGCCA 1919 consensus_409#1 --------------------------GGAAGACTGATTTTTTTTCGGGCAGTCAGTGCCA 423 ***************** ****** ********* consensus_409#0 CACAGGAGTCATCTGAAGGTGATGGCGTAGAAGATTTGAAGTTAGCTTGGTGGTGACATG 1979 consensus_409#1 CACAGGAGTCATCTGAAGGTGATGGCGTAGAAGATTTAAAGTTAGCTTGGTGGTGACATG 483 ************************************* ********************** consensus_409#0 GAAGGTTTCTCTTTACGTAGAATTGACTACTACCTTTACCAACGGTATATAAGAATTTCT 2039 consensus_409#1 GAAGGTTTCTCTTTACGTAGAATTGATTACTACCTTTACCAACGGTATATAAGAATTTCT 543 ************************** ********************************* consensus_409#0 CTCTTAACTTACAGCGCACAAGAACTTTATTTGGGTCATATGGTACATTTCTTTGTTAAA 2099 consensus_409#1 CTCTTAACTTACAGCGCACAAGAACTTTATTTGGGTCATATGGTACATTTCTTTGTTAAA 603 ************************************************************ consensus_409#0 TCCGGACATGTACTATGGCGTTGTTCTGATATTATGAGGTG------------------- 2140 consensus_409#1 TCCGGACATGTACTATGGCGTTGTTCTGATATTATGAGGTGATTGTCTTGTATTTCCCCC 663 ***************************************** consensus_409#0 ------------------------------- consensus_409#1 TTATTTTGTGTATCGCTGTAAAAAAAAAAAA 694 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||