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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4093#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1303 fasta sequence
[TTCCCCTCTCCCGCGCATCCGCCCCGCGCCATGGCCGCCTCCAGCTCCTCCGCCCCCGCCCTCGCCGACGCCTACGACATCCCGTGGGTGGAGAAGTACCGCCCCACCCGCGTCGCCGACGTCGTCGGCAACTCCGACGCCGTCGCCCGCCTCCAGGTCATCGCCCGCGACGGCAACATGCCAAACCTAATCCTCTCCGGGCCTCCGGGCACCGGGAAGACTACGAGCATCCTGTCGCTGGCACACGAGCTGCTCGGACCTAGCTACCGCGAGGCCGTGCTCGAGCTCAATGCCTCGGACGACAGGGGCCTGGATGTGGTGCGGAACAAGATCAAGATGTTTGCGCAGAAGAAGGTCACGCTGCAGCCGGGGAGGCACAAGATCGTCATCTTGGATGAGGCTGACAGCATGACATCGGGAGCACAGCAAGCACTGAGACGAACAATGGAGATTTATTCTAACACCACAAGGTTTGCGCTTGCATGCAACACTTCATCTAAGATCATTGAACCCATTCAAAGCCGTTGTGCTATTGTACGGTTCTCAAGGCTTTCAGATCAGGAGATTCTTGGCCGACTCATGATTGTGGTAGCAGCTGAGAAGGTTCCTTACGTGCCAGAGGGACTTGAAGCTATCATCTTTACTGCTGATGGTGACATGAGGCAAGCTTTGAACAACTTGCAAGCTACAGTTAGTGGGTTCCGTTTTGTTAATCAAGAAAATGTGTTCAAGGTGTGTGATCAACCACATCCGTTGCATGTCAAGAATATGGTGAAAAATGTGCTTGATGGAAAGTTTGATGAGGCTTGCTCTGCTCTGAAGCAATTATATGATTTGGGCTACTCTCCCACTGACATAATCACTACTCTCTTCCGGGTTATCAAGAACTACGACATGGCTGAATATCTGAAGCTGGAATTGTTGAAGGAAACCGGATTTGCTCACATGAGAATCTGCGATGGTGTTGGCTCATTTCTTCAATTATCAGGCCTCCTGGCAAAGTTTGCGTTGGTGAGAGAAACAGCAAAAGCATCATGAACTTGTTGCAGATGGTAATAGCTGTACGTGCAACTGTCCTGGCACGGTAACCTAATGATCTTAGTTAACAATATTCTGGCTTGCTGAGTACAATCATGTCTCGCTTAAAGTAGAACATCTATGTTATGTGCAATGGAAGATAGCGCCTCGCTTGAGTAAAACTTCTATATATTTATGTCGAATGAATGATCCAGCATGGCCAAAGGGGGCTAAATTATGCATCCAGTTCAGGTGATGTAGCCTGTATGGCCTTGCCCGTCGCAAG]
[+] EMBL AK069025 [TTCCCCTCTCCCGCGCATCCGCCCCGCGCCATGGCCGCCTCCAGCTCCTCCGCCCCCGCCCTCGCCGACGCCTACGACATCCCGTGGGTGGAGAAGTACCGCCCCACCCGCGTCGCCGACGTCGTCGGCAACTCCGACGCCGTCGCCCGCCTCCAGGTCATCGCCCGCGACGGCAACATGCCAAACCTAATCCTCTCCGGGCCTCCGGGCACCGGGAAGACTACGAGCATCCTGTCGCTGGCACACGAGCTGCTCGGACCTAGCTACCGCGAGGCCGTGCTCGAGCTCAATGCCTCGGACGACAGGGGCCTGGATGTGGTGCGGAACAAGATCAAGATGTTTGCGCAGAAGAAGGTCACGCTGCAGCCGGGGAGGCACAAGATCGTCATCTTGGATGAGGCTGACAGCATGACATCGGGAGCACAGCAAGCACTGAGACGAACAATGGAGATTTATTCTAACACCACAAGGTTTGCGCTTGCATGCAACACTTCATCTAAGATCATTGAACCCATTCAAAGCCGTTGTGCTATTGTACGGTTCTCAAGGCTTTCAGATCAGGAGATTCTTGGCCGACTCATGATTGTGGTAGCAGCTGAGAAGGTTCCTTACGTGCCAGAGGGACTTGAAGCTATCATCTTTACTGCTGATGGTGACATGAGGCAAGCTTTGAACAACTTGCAAGCTACAGTTAGTGGGTTCCGTTTTGTTAATCAAGAAAATGTGTTCAAGGTGTGTGATCAACCACATCCGTTGCATGTCAAGAATATGGTGAAAAATGTGCTTGATGGAAAGTTTGATGAGGCTTGCTCTGCTCTGAAGCAATTATATGATTTGGGCTACTCTCCCACTGACATAATCACTACTCTCTTCCGGGTTATCAAGAACTACGACATGGCTGAATATCTGAAGCTGGAATTGTTGAAGGAAACCGGATTTGCTCACATGAGAATCTGCGATGGTGTTGGCTCATTTCTTCAATTATCAGGCCTCCTGGCAAAGTTTGCGTTGGTGAGAGAAACAGCAAAAGCATCATGAACTTGTTGCAGATGGTAATAGCTGTACGTGCAACTGTCCTGGCACGGTAACCTAATGATCTTAGTTAACAATATTCTGGCTTGCTGAGTACAATCATGTCTCGCTTAAAGTAGAACATCTATGTTATGTGCAATGGAAGATAGCGCCTCGCTTGAGTAAAACTTCTATATATTTATGTCGAATGAATGATCCAGCATGGCCAAAGGGGGCTAAATTATGCATCCAGTTCAGGTGATGTAGCCTGTATGGCCTTGCCCGTCGCAAG]
consensusID : consensus_4093#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1283 fasta sequence
[TCCCTCCACCGCGGCGCGGTTTTTTCCCCTCTCCCGCGCATCCGCCCCGCGCCATGGCCGCCTCCAGCTCCTCCGCCCCCGCCCTCGCCGACGCCTACGACATCCCGTGGGTGGAGAAGTACCGCCCCACCCGCGTCGCCGACGTCGTCGGCAACTCCGACGCCGTCGCCCGCCTCCAGGTCATCGCCCGCGACGGCAACATGCCAAACCTAATCCTCTCCGGGCCTCCGGGCACCGGGAAGACTACGAGCATCCTGTCGCTGGCACACGAGCTGCTCGGACCTAGCTACCGCGAGGCCGTGCTCGAGCTCAATGCCTCGGACGACAGGGGCCTGGATGTGGTGCGGAACAAGATCAAGATGTTTGCGCAGAAGAAGGTCACGCTGCAGCCGGGGAGGCACAAGATCGTCATCTTGGATGAGGCTGACAGCATGACATCGGGAGCACAGCAAGCACTGAGACGAACAATGGAGATTTATTCTAACACCACAAGGTTTGCGCTTGCATGCAACACTTCATCTAAGATCATTGAACCCATTCAAAGCCGTTGTGCTATTGTACGGTTCTCAAGGCTTTCAGATCAGGAGATTCTTGGCCGACTCATGATTGTGGTAGCAGCTGAGAAGGTTCCTTACG-TGCCAGAGGGACTTGAAGCTATCATCTTT-ACTGCTGATGGTG-ACATGAGGCAAGCTTTGAA-CAACTTGCAAGCT-ACAGTTAGTGGGTTCC-GTTTTGTTAATCAAGAAAATGTGTTCAAGGTGTGTGATCAACCACATCCGTTGCATGTCAAGAATATGGTGAAAAATGTGCTTGATGGAAAGTTTGATGAGGCTTGCTCTGCTCTGAAGCAATTATATGATTTGGGCTACTCTCCCACTGACATAATCACTACTCTCTTCCGGGTTATCAAGAACTACGACATGGCTGAATATCTGAAGCTGGAATTGTTGAAGGAAACCGGATTTGCTCACATGAGAATCTGCGATGGTGTTGGCTCATTTCTTCAATTATCAGGCCTTCTGGCAAAGTTTGCGTTGGTGAGAGAAACAGCAAAAGCATCATGAACTTGTTGCAGATGGTAATAGCTGTACGTGCAACTGTCCTGGCACGGTAACCTAATGATCTTAGTTAACAATATTCTGGCTTGCTGAGTACAATCATGTCATCTTTTCAATGTGTAAGATAGTGTCTCGCTTAAAGTAGAACATCTATGTTATGTGCAATGGAAGATAGCGCCTCGCTTGAGTAAAACTTCTATATATTTATGTCGAAAAAAAAAAAAAAAA]
[+] EMBL AB066661 [TCCCTCCACCGCGGCGCGGTTTTTTCCCCTCTCCCGCGCATCCGCCCCGCGCCATGGCCGCCTCCAGCTCCTCCGCCCCCGCCCTCGCCGACGCCTACGACATCCCGTGGGTGGAGAAGTACCGCCCCACCCGCGTCGCCGACGTCGTCGGCAACTCCGACGCCGTCGCCCGCCTCCAGGTCATCGCCCGCGACGGCAACATGCCAAACCTAATCCTCTCCGGGCCTCCGGGCACCGGGAAGACTACGAGCATCCTGTCGCTGGCACACGAGCTGCTCGGACCTAGCTACCGCGAGGCCGTGCTCGAGCTCAATGCCTCGGACGACAGGGGCCTGGATGTGGTGCGGAACAAGATCAAGATGTTTGCGCAGAAGAAGGTCACGCTGCAGCCGGGGAGGCACAAGATCGTCATCTTGGATGAGGCTGACAGCATGACATCGGGAGCACAGCAAGCACTGAGACGAACAATGGAGATTTATTCTAACACCACAAGGTTTGCGCTTGCATGCAACACTTCATCTAAGATCATTGAACCCATTCAAAGCCGTTGTGCTATTGTACGGTTCTCAAGGCTTTCAGATCAGGAGATTCTTGGCCGACTCATGATTGTGGTAGCAGCTGAGAAGGTTCCTTACG TGCCAGAGGGACTTGAAGCTATCATCTTT ACTGCTGATGGTG ACATGAGGCAAGCTTTGAA CAACTTGCAAGCT ACAGTTAGTGGGTTCC GTTTTGTTAATCAAGAAAATGTGTTCAAGGTGTGTGATCAACCACATCCGTTGCATGTCAAGAATATGGTGAAAAATGTGCTTGATGGAAAGTTTGATGAGGCTTGCTCTGCTCTGAAGCAATTATATGATTTGGGCTACTCTCCCACTGACATAATCACTACTCTCTTCCGGGTTATCAAGAACTACGACATGGCTGAATATCTGAAGCTGGAATTGTTGAAGGAAACCGGATTTGCTCACATGAGAATCTGCGATGGTGTTGGCTCATTTCTTCAATTATCAGGCCTTCTGGCAAAGTTTGCGTTGGTGAGAGAAACAGCAAAAGCATCATGAACTTGTTGCAGATGGTAATAGCTGTACGTGCAACTGTCCTGGCACGGTAACCTAATGATCTTAGTTAACAATATTCTGGCTTGCTGAGTACAATCATGTCATCTTTTCAATGTGTAAGATAGTGTCTCGCTTAAAGTAGAACATCTATGTTATGTGCAATGGAAGATAGCGCCTCGC ]
[-] EMBL CA763155 [ cgCTCATGGTTTGGGTACCACCTACGAAGGTTCCCTTCGTTGCCGGAGGGCCTGGAAGCCATCATCTTTGGCGCCTGATGGTGCCCCTGAGGCAAGCTTTTAAGCAACCTTCCAGCTCACAGTTAGTGGGTTCCGGTTTTGTTAATCAAGAAAATGTGTTCAAGGGGTG GATCAACCACATCCGTTGCATGTCAAGAATATGGTGAAAAATGTGCTTCATGGAAAGTTTGATGAGGCCTGCTCTGCTCTGAAGCAATTATATGATTTGGGCTACTCTCCCCCTGACATAATCACTACTCTCTTCCGGGTTATCAAGAACTACGACATGGCTGAATATCTGAAGCTGGAATTGTTGAAGGAAACCGGATTTGCTCACATGAGAATTTGCGATGGTGTTGGCTCATTTCTTCAATTATCAGGCCTTCTGGCAAAGTTTGCGTTGGTGAGAGAAACAGCAAAAGCATCATGAACTTGTTGCAGATGGTAATAGCTGTACGTGCAACTGTCCTGGCCCGGTAACCTAATGATCTTAGTTAACAATATTCTGGCCTGCTGAGTACAATCATGTCATCTTTTCAATATGTAAGATAGTGTCTCGCTTAAAGTAGAACATCTATGTTATGTGCAATGGAAGATAGCGCCTCGCTTGAGTAAAACTTCTATATATTTATGTCGAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4093#0 -----------------------TTCCCCTCTCCCGCGCATCCGCCCCGCGCCATGGCCG 37
consensus_4093#1 TCCCTCCACCGCGGCGCGGTTTTTTCCCCTCTCCCGCGCATCCGCCCCGCGCCATGGCCG 60
*************************************
consensus_4093#0 CCTCCAGCTCCTCCGCCCCCGCCCTCGCCGACGCCTACGACATCCCGTGGGTGGAGAAGT 97
consensus_4093#1 CCTCCAGCTCCTCCGCCCCCGCCCTCGCCGACGCCTACGACATCCCGTGGGTGGAGAAGT 120
************************************************************
consensus_4093#0 ACCGCCCCACCCGCGTCGCCGACGTCGTCGGCAACTCCGACGCCGTCGCCCGCCTCCAGG 157
consensus_4093#1 ACCGCCCCACCCGCGTCGCCGACGTCGTCGGCAACTCCGACGCCGTCGCCCGCCTCCAGG 180
************************************************************
consensus_4093#0 TCATCGCCCGCGACGGCAACATGCCAAACCTAATCCTCTCCGGGCCTCCGGGCACCGGGA 217
consensus_4093#1 TCATCGCCCGCGACGGCAACATGCCAAACCTAATCCTCTCCGGGCCTCCGGGCACCGGGA 240
************************************************************
consensus_4093#0 AGACTACGAGCATCCTGTCGCTGGCACACGAGCTGCTCGGACCTAGCTACCGCGAGGCCG 277
consensus_4093#1 AGACTACGAGCATCCTGTCGCTGGCACACGAGCTGCTCGGACCTAGCTACCGCGAGGCCG 300
************************************************************
consensus_4093#0 TGCTCGAGCTCAATGCCTCGGACGACAGGGGCCTGGATGTGGTGCGGAACAAGATCAAGA 337
consensus_4093#1 TGCTCGAGCTCAATGCCTCGGACGACAGGGGCCTGGATGTGGTGCGGAACAAGATCAAGA 360
************************************************************
consensus_4093#0 TGTTTGCGCAGAAGAAGGTCACGCTGCAGCCGGGGAGGCACAAGATCGTCATCTTGGATG 397
consensus_4093#1 TGTTTGCGCAGAAGAAGGTCACGCTGCAGCCGGGGAGGCACAAGATCGTCATCTTGGATG 420
************************************************************
consensus_4093#0 AGGCTGACAGCATGACATCGGGAGCACAGCAAGCACTGAGACGAACAATGGAGATTTATT 457
consensus_4093#1 AGGCTGACAGCATGACATCGGGAGCACAGCAAGCACTGAGACGAACAATGGAGATTTATT 480
************************************************************
consensus_4093#0 CTAACACCACAAGGTTTGCGCTTGCATGCAACACTTCATCTAAGATCATTGAACCCATTC 517
consensus_4093#1 CTAACACCACAAGGTTTGCGCTTGCATGCAACACTTCATCTAAGATCATTGAACCCATTC 540
************************************************************
consensus_4093#0 AAAGCCGTTGTGCTATTGTACGGTTCTCAAGGCTTTCAGATCAGGAGATTCTTGGCCGAC 577
consensus_4093#1 AAAGCCGTTGTGCTATTGTACGGTTCTCAAGGCTTTCAGATCAGGAGATTCTTGGCCGAC 600
************************************************************
consensus_4093#0 TCATGATTGTGGTAGCAGCTGAGAAGGTTCCTTACGTGCCAGAGGGACTTGAAGCTATCA 637
consensus_4093#1 TCATGATTGTGGTAGCAGCTGAGAAGGTTCCTTACGTGCCAGAGGGACTTGAAGCTATCA 660
************************************************************
consensus_4093#0 TCTTTACTGCTGATGGTGACATGAGGCAAGCTTTGAACAACTTGCAAGCTACAGTTAGTG 697
consensus_4093#1 TCTTTACTGCTGATGGTGACATGAGGCAAGCTTTGAACAACTTGCAAGCTACAGTTAGTG 720
************************************************************
consensus_4093#0 GGTTCCGTTTTGTTAATCAAGAAAATGTGTTCAAGGTGTGTGATCAACCACATCCGTTGC 757
consensus_4093#1 GGTTCCGTTTTGTTAATCAAGAAAATGTGTTCAAGGTGTGTGATCAACCACATCCGTTGC 780
************************************************************
consensus_4093#0 ATGTCAAGAATATGGTGAAAAATGTGCTTGATGGAAAGTTTGATGAGGCTTGCTCTGCTC 817
consensus_4093#1 ATGTCAAGAATATGGTGAAAAATGTGCTTGATGGAAAGTTTGATGAGGCTTGCTCTGCTC 840
************************************************************
consensus_4093#0 TGAAGCAATTATATGATTTGGGCTACTCTCCCACTGACATAATCACTACTCTCTTCCGGG 877
consensus_4093#1 TGAAGCAATTATATGATTTGGGCTACTCTCCCACTGACATAATCACTACTCTCTTCCGGG 900
************************************************************
consensus_4093#0 TTATCAAGAACTACGACATGGCTGAATATCTGAAGCTGGAATTGTTGAAGGAAACCGGAT 937
consensus_4093#1 TTATCAAGAACTACGACATGGCTGAATATCTGAAGCTGGAATTGTTGAAGGAAACCGGAT 960
************************************************************
consensus_4093#0 TTGCTCACATGAGAATCTGCGATGGTGTTGGCTCATTTCTTCAATTATCAGGCCTCCTGG 997
consensus_4093#1 TTGCTCACATGAGAATCTGCGATGGTGTTGGCTCATTTCTTCAATTATCAGGCCTTCTGG 1020
******************************************************* ****
consensus_4093#0 CAAAGTTTGCGTTGGTGAGAGAAACAGCAAAAGCATCATGAACTTGTTGCAGATGGTAAT 1057
consensus_4093#1 CAAAGTTTGCGTTGGTGAGAGAAACAGCAAAAGCATCATGAACTTGTTGCAGATGGTAAT 1080
************************************************************
consensus_4093#0 AGCTGTACGTGCAACTGTCCTGGCACGGTAACCTAATGATCTTAGTTAACAATATTCTGG 1117
consensus_4093#1 AGCTGTACGTGCAACTGTCCTGGCACGGTAACCTAATGATCTTAGTTAACAATATTCTGG 1140
************************************************************
consensus_4093#0 CTTGCTGAGTACAATCATGTC--------------------------TCGCTTAAAGTAG 1151
consensus_4093#1 CTTGCTGAGTACAATCATGTCATCTTTTCAATGTGTAAGATAGTGTCTCGCTTAAAGTAG 1200
********************* *************
consensus_4093#0 AACATCTATGTTATGTGCAATGGAAGATAGCGCCTCGCTTGAGTAAAACTTCTATATATT 1211
consensus_4093#1 AACATCTATGTTATGTGCAATGGAAGATAGCGCCTCGCTTGAGTAAAACTTCTATATATT 1260
************************************************************
consensus_4093#0 TATGTCGAATGAATGATCCAGCATGGCCAAAGGGGGCTAAATTATGCATCCAGTTCAGGT 1271
consensus_4093#1 TATGTCGAAAAAAAAAAAAAAAA------------------------------------- 1283
********* ** * * *
consensus_4093#0 GATGTAGCCTGTATGGCCTTGCCCGTCGCAAG 1303
consensus_4093#1 --------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||