cluster # 4102

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Oryza sativa
cluster # 4102 cluster # 4102 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4102#0 length = 765 sequences # 2

consensus_4102#1 length = 695 sequences # 1

consensusID : consensus_4102#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 765
fasta sequence

                              [CTTAGTATAGTAATAAGCCATGGAGGGAGAACCAGTATAGTAGTAGCAATACAAATCTTTACTGCGCGAGGTTTTCAAAACCTTAAATTGTCTCAAAATAACTCTAGCATGCAAAGAGCACGTTAACAAGTACTCTAGGAAAGGAAGCGACTTTAGAGAACCATTACTAAGCTTCGTCTCTTCTGAAAGGAAGCGACTCTAGAGAATCAGTAATAAGCTTCATCTCTTCCCAAAAGGGTATCCTATCAGGATCTTTGAAATCAACCCGCACATTTACCTTCAAAAAATTGATTATCGCTTGCATTGAAGTCTTCAAGAGCTTGGCAACAAAGAATTCAGAAGTAAGAATAGCCCGGGATTTCTTTCCATGATGACCCTATCGACTTTAACTTGTGCCTTCAATTCCTTCTCATGGGTGTACATCCCACTTATACGTAGGACATAATCAACTCTGCTCTTCTTATCAAATTTAGGCATGCTCTTATCAACTCGGTAGCCATCCATCAACTCAATTAACCCGTCATAGTCATCTTTACCCCAAGGGACAATACACAAATCTTTACATTCCTGAATCTTCGATCGGAATGATGCACTGATCATGGCCAGTGGAACTTCAGAAATGAGAAGGAACTTCCTTTTATCATAATCCCAGAAGAAAGGATGCCTTCTGATCTTTTCCTTGATAGAATCTAACTGTCCACTACGTAACAGACAATGTAGCACAATGAATCATGAATTTATCTCTTTAGACAAAGTTATTATACT]

[+] EMBL CB633356             [CTTAGTATAGTAATAAGCCATGGAGGGAGAACCAGTATAGTAGTAGCAATACAAATCTTTACTGCGCGAGGTTTTCAAAACCTTAAATTGTCTCAAAATAACTCTAGCATGCAAAGAGCACGTTAACAAGTACTCTAGGAAAGGAAGCGACTTTAGAGAACCATTACTAAGCTTCGTCTCTTCTGAAAGGAAGCGACTCTAGAGAATCAGTAATAAGCTTCATCTCTTCCCAAAAGGGTATCCTATCAGGATCTTTGAAATCAACCCGCACATTTACCTTCAAAAAATTGATTATCGCTTGCATTGAAGTCTTCAAGAGCTTGGCAACAAAGAATTCAGAAGTAAGAATAGCCCGGGATTTCTTTCCATGATGACCCTATCGACTTTAACTTGTGCCTTCAATTCCTTCTCATGGGTGTACATCCCACTTATACGTAGGACATAATCAACTCTGCTCTTCTTATCAAATTTAGGCATGCTCTTATCAACTCGGTAGCCATCCATCAACTCAATTAACCCGTCATAGTCATCTTTACCCCAAGGGACAATACACAAATCTTTACATTCCTGAATCTTCGATCGGAATGATGCACTGATCATGGCCAGTGGAACTTCAGAAATGAGAAGGAACTTCCTTTTATCATAATCCCAGAAGAAAGGATGCCTTCTGATCTTTTCCTTGATAGAATCTAACTGTCCACTACGTAACAGACAATGTAGCACAATGAATCATGAATTTATCTCTTTAGACAAAGTTATTATACT]
[+] EMBL CA763163             [                                   TATAGTAGAGGCAATACAAATCTTTACTGCGCGAGGTTTTCAAAACCTTAAATTGTCTCCTGCTAACTCTAGCATGCAAGGAGCACGTTAACAAGTACTCTAGGAAAGGAAGCGACTTTAGAGAACCATTACTAAGCTTCGTCTCTTCTGAAAGGAAGCGACTCTGGAGAATCAGTAATAAGCTTCATCTTTTCCCAAAAGGGTATCCTATCAGGATCTTTGAAATCAACCCGCACATTTACCTTCAAAAAATTGATTATCGCTTGCATTGAAGTCTTCAAGAGCTTGGCAACAAAGAATTCAGAAGTAAGAATAGCCCGGGATTTCTTTCCATGATGACCCTATCGACTTTAACTTGGGCCTTCAATTCCTTCTCATGGGTGTACATCCCACTTATACGTAGGACATAATCAACTCTGCTCTTCTTATCAAATTTAGGCATGCTCTTATCAACTCGGTAGCCATCCATCAACTCAATTAACCCGTCATAGTCATCTTTACCCCAAGGGACAATACACAAATCTTTACATTCCTGAATCTTCGATCGGAATGATGCACTGATCATGGCCAGTGGAACTTCAGAAATGAGAAGGAACTTCCTTTTATCATAATCCCGGAAG AAGGATGCCTTCTGATCT                                                                                           ]




>consensus_4102#0
CTTAGTATAGTAATAAGCCATGGAGGGAGAACCAGTATAGTAGTAGCAATACAAATCTTT
ACTGCGCGAGGTTTTCAAAACCTTAAATTGTCTCAAAATAACTCTAGCATGCAAAGAGCA
CGTTAACAAGTACTCTAGGAAAGGAAGCGACTTTAGAGAACCATTACTAAGCTTCGTCTC
TTCTGAAAGGAAGCGACTCTAGAGAATCAGTAATAAGCTTCATCTCTTCCCAAAAGGGTA
TCCTATCAGGATCTTTGAAATCAACCCGCACATTTACCTTCAAAAAATTGATTATCGCTT
GCATTGAAGTCTTCAAGAGCTTGGCAACAAAGAATTCAGAAGTAAGAATAGCCCGGGATT
TCTTTCCATGATGACCCTATCGACTTTAACTTGTGCCTTCAATTCCTTCTCATGGGTGTA
CATCCCACTTATACGTAGGACATAATCAACTCTGCTCTTCTTATCAAATTTAGGCATGCT
CTTATCAACTCGGTAGCCATCCATCAACTCAATTAACCCGTCATAGTCATCTTTACCCCA
AGGGACAATACACAAATCTTTACATTCCTGAATCTTCGATCGGAATGATGCACTGATCAT
GGCCAGTGGAACTTCAGAAATGAGAAGGAACTTCCTTTTATCATAATCCCAGAAGAAAGG
ATGCCTTCTGATCTTTTCCTTGATAGAATCTAACTGTCCACTACGTAACAGACAATGTAG
CACAATGAATCATGAATTTATCTCTTTAGACAAAGTTATTATACT

consensusID : consensus_4102#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 695
fasta sequence

                              [TTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAGGAACTCTCAAAATCCTAAACCCCCACTTCACAAGATAGCAAACCAACAAATTATCCACCTAACATATTTACCCCATACTCAAACACTACCGTTGCCTAGGCAAAATAGTCACCAAACATCCCCACAAATCTCTGCACAGGGTTGCATCCAATTATCCCATCCCCTTCAAAGCACAAATAGATGGCTGGGTTCTGGGTTTCCCCCTGCTGAGCAAGTACTCAAAGAAAAACATTCCTAAAAAATGAGGCAGGACAGCTACATGTTCTCAGCATTGTCAAGACACTGATCTAAAGCTCCCTGTCCACCTTCTCCTCACCACCTCCCCGTCTCTTTGCACTCTTTAATCCAAAATAATTGCATGCCTGCAAAACAACCTTCAAAATTGATTATCGCTTGCATTGAAGTCTTCAAGAGCTTGGCAACAAAGAATTCAAAAGTAAGAATAGCCCGGGATTTCTTTCCATGATGACCCTATCGACTTTAACTTGTGCCTTCAATTCCTTCTCATGGGGGCACATCCCACTCACACGTAGGACATAATCAACTCTGCTCTTCTTATCAAATTTAGGCATGCTCTTATCAACTCGGGAGCCATCCATCAACTCAATTAACCCGTCATAGTCATCTTTACCCCAAGGGACAATACAC]

[+] EMBL CA763162             [TTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAGGAACTCTCAAAATCCTAAACCCCCACTTCACAAGATAGCAAACCAACAAATTATCCACCTAACATATTTACCCCATACTCAAACACTACCGTTGCCTAGGCAAAATAGTCACCAAACATCCCCACAAATCTCTGCACAGGGTTGCATCCAATTATCCCATCCCCTTCAAAGCACAAATAGATGGCTGGGTTCTGGGTTTCCCCCTGCTGAGCAAGTACTCAAAGAAAAACATTCCTAAAAAATGAGGCAGGACAGCTACATGTTCTCAGCATTGTCAAGACACTGATCTAAAGCTCCCTGTCCACCTTCTCCTCACCACCTCCCCGTCTCTTTGCACTCTTTAATCCAAAATAATTGCATGCCTGCAAAACAACCTTCAAAATTGATTATCGCTTGCATTGAAGTCTTCAAGAGCTTGGCAACAAAGAATTCAAAAGTAAGAATAGCCCGGGATTTCTTTCCATGATGACCCTATCGACTTTAACTTGTGCCTTCAATTCCTTCTCATGGGGGCACATCCCACTCACACGTAGGACATAATCAACTCTGCTCTTCTTATCAAATTTAGGCATGCTCTTATCAACTCGGGAGCCATCCATCAACTCAATTAACCCGTCATAGTCATCTTTACCCCAAGGGACAATACAC]




>consensus_4102#1
TTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAGGAACTCTCAAAAT
CCTAAACCCCCACTTCACAAGATAGCAAACCAACAAATTATCCACCTAACATATTTACCC
CATACTCAAACACTACCGTTGCCTAGGCAAAATAGTCACCAAACATCCCCACAAATCTCT
GCACAGGGTTGCATCCAATTATCCCATCCCCTTCAAAGCACAAATAGATGGCTGGGTTCT
GGGTTTCCCCCTGCTGAGCAAGTACTCAAAGAAAAACATTCCTAAAAAATGAGGCAGGAC
AGCTACATGTTCTCAGCATTGTCAAGACACTGATCTAAAGCTCCCTGTCCACCTTCTCCT
CACCACCTCCCCGTCTCTTTGCACTCTTTAATCCAAAATAATTGCATGCCTGCAAAACAA
CCTTCAAAATTGATTATCGCTTGCATTGAAGTCTTCAAGAGCTTGGCAACAAAGAATTCA
AAAGTAAGAATAGCCCGGGATTTCTTTCCATGATGACCCTATCGACTTTAACTTGTGCCT
TCAATTCCTTCTCATGGGGGCACATCCCACTCACACGTAGGACATAATCAACTCTGCTCT
TCTTATCAAATTTAGGCATGCTCTTATCAACTCGGGAGCCATCCATCAACTCAATTAACC
CGTCATAGTCATCTTTACCCCAAGGGACAATACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4102#0      ------------------------------------------------------------
consensus_4102#1      TTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAGGAACTCTCAAAAT 60
                                                                                  

consensus_4102#0      -----------------------------------------------------CTTAGT- 6
consensus_4102#1      CCTAAACCCCCACTTCACAAGATAGCAAACCAACAAATTATCCACCTAACATATTTACCC 120
                                                                            ***   

consensus_4102#0      -ATAGTAATAAGCCATGGAGGGAGAACCAGTATAGT-----AGTAGCAATACAAATCTTT 60
consensus_4102#1      CATACTCAAACACTACCGTTGCCTAGGCAAAATAGTCACCAAACATCCCCACAAATCTCT 180
                       *** * * *  * *  *  *   *  **  *****     *  * *   ******** *

consensus_4102#0      ACTGCGCGAGGTTTTCAAAACCTTAAATTGTCTCAAAATAACTCTAGCATGCAAAGAGCA 120
consensus_4102#1      GCACAGGGTTGCATCCAATTATCCCATCCCCTTCAAAGCACAAATAGATGGCTGGGTTCT 240
                       *   * *  *  * ***       *      *****  *    ***   **   *  * 

consensus_4102#0      CGTT------------AACAAGTACTCTAGGAAAGGAAGC----GACTTTAGAGAACCAT 164
consensus_4102#1      GGGTTTCCCCCTGCTGAGCAAGTACTCAAAGAAAAACATTCCTAAAAAATGAGGCAGGAC 300
                       * *            * ********* * ****   *       *   *   * *  * 

consensus_4102#0      TACTAAGCTTCGTCTCTTCTGAAAGGAAGCGACTCTAGAGAATCAGTAATAAGCTTCATC 224
consensus_4102#1      AGCTACATGTTCTCAGCATTGTCAAGACACTGATCTAAAGC-TCCCTGTCCACCTTCTCC 359
                        ***    *  **     **  * **  *   **** **  **  *    * ****  *

consensus_4102#0      TCTTCCCAAAAGGGTATCCTATCAGGATCT--TTGAAATCAA-------CCCGCACATTT 275
consensus_4102#1      TCACCACCTCCCCGTCTCTTTGCACTCTTTAATCCAAAATAATTGCATGCCTGCAAAACA 419
                      **  * *      ** ** *  **   * *  *  ***  **       ** *** *   

consensus_4102#0      ACCTTCAAAAAATTGATTATCGCTTGCATTGAAGTCTTCAAGAGCTTGGCAACAAAGAAT 335
consensus_4102#1      ACCTTCAAA--ATTGATTATCGCTTGCATTGAAGTCTTCAAGAGCTTGGCAACAAAGAAT 477
                      *********  *************************************************

consensus_4102#0      TCAGAAGTAAGAATAGCCCGGGATTTCTTTCCATGATGACCCTATCGACTTTAACTTGTG 395
consensus_4102#1      TCAAAAGTAAGAATAGCCCGGGATTTCTTTCCATGATGACCCTATCGACTTTAACTTGTG 537
                      *** ********************************************************

consensus_4102#0      CCTTCAATTCCTTCTCATGGGTGTACATCCCACTTATACGTAGGACATAATCAACTCTGC 455
consensus_4102#1      CCTTCAATTCCTTCTCATGGGGGCACATCCCACTCACACGTAGGACATAATCAACTCTGC 597
                      ********************* * ********** * ***********************

consensus_4102#0      TCTTCTTATCAAATTTAGGCATGCTCTTATCAACTCGGTAGCCATCCATCAACTCAATTA 515
consensus_4102#1      TCTTCTTATCAAATTTAGGCATGCTCTTATCAACTCGGGAGCCATCCATCAACTCAATTA 657
                      ************************************** *********************

consensus_4102#0      ACCCGTCATAGTCATCTTTACCCCAAGGGACAATACACAAATCTTTACATTCCTGAATCT 575
consensus_4102#1      ACCCGTCATAGTCATCTTTACCCCAAGGGACAATACAC---------------------- 695
                      **************************************                      

consensus_4102#0      TCGATCGGAATGATGCACTGATCATGGCCAGTGGAACTTCAGAAATGAGAAGGAACTTCC 635
consensus_4102#1      ------------------------------------------------------------
                                                                                  

consensus_4102#0      TTTTATCATAATCCCAGAAGAAAGGATGCCTTCTGATCTTTTCCTTGATAGAATCTAACT 695
consensus_4102#1      ------------------------------------------------------------
                                                                                  

consensus_4102#0      GTCCACTACGTAACAGACAATGTAGCACAATGAATCATGAATTTATCTCTTTAGACAAAG 755
consensus_4102#1      ------------------------------------------------------------
                                                                                  

consensus_4102#0      TTATTATACT 765
consensus_4102#1      ----------