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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4106#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1377 fasta sequence
[AAGCTAGGCCAGCACGCGTACACGCGCGCCGCCGACCGCGGACGATGGCCACGCATCACCATGGCGCTAATCCACCACCACCTCGCCGTTCCAGTGGCTCCCGCTCCTCCTCCTCGGGGTCTCGGTCCGGCCACCGCCGCCCGGCGGCTGACCCTTCACCGCCGCCGCCGTAGGAGTGGCGCCGCCGCCGGCAGGATGACAGTCACAGCTTCGTCGATGGTGGAGCCGGCAAGTGGGGAGGAGACGGCGGCGCGTTCGGCGGCGGACGTGGTGAGGGCGTTCTACGACGGCGTGAACCGGCGGGACCTGGCGGCGGTGGAGCCGCTCATCGCGGAGGGGTGCGTCTACGAGGACCTCGTCTTCCCCAACCCCTTCGTCGGCCGCGCCGAGATACTCGGCTTCTTCGCCGGATTCATGGGCTCCGTCAGCTCCGACCTCCGCTTCGTCATCGACGACATCTCCGCCGGCGACGACTCCCGCGCCGTCGGCGTCACCTGGCACCTCGATTGGAAGGGGCGGCCATTCCCATTCAGCAGGGGATGCAGCTTCTACCGCCTCCAGCTGGACGAGAAGCAGCAGCAGCTGCAGATCGTGTATGGGCGAGACTGCGTGGAGCCAGCAGTGAAGCCAGGGGAATCCGCGCTGCTCATCATCAGGGCCGTCACTTGGATCTTCGAACGCTTTCCACGCCTTGCAAACATGCTGACGAAGTGTGTGATTGGAAAGATCATCTGGAAGTCCCGGGCCCCTGCGAGATGTAAATTCTTCATGTATACCGCGATGCGGGGCGCCTGTTTGACGGCTGATAACTTGCAGCGGCGGGGTTGGCACCTAGCCCCGGTTTGTCACCTTTGCTCCCAAGATAGAGAGACATGCGCACACATCTTCCTCAGCTGTCGTTACACGCAGCAGGTGTGTGCGACTGTGCGTGGCCGCCTTGGTCTGTCCTCCACTACACCGTCGGCTGATCTTTCCTCCTGGTGGCGCTCCGCGCGGAAATCAATTTCTAAACAAGACCGTAAGACTTTCGATGCTGGAGTTATCTTGGTGACCTGAAGGAACGCAATGCTAGAATTTTCGACAACAAGGCCATTCCGGCGGCGCACTTATGTGCAGCAATGGAAGATGAATGGACCACTTGGGGTGCAGCAGGGCTGCTGTGTCCACTGCAAGCCGGAAGCAACCTGATGGCGAGAGAGCAACATTAAGCCGGTGGTGGTAGCTCGCTGCTCTGTAGTACAGACGTGCTTTAGTGTCTGGCAGGCAGCATCCTCTGTAGCCTGAATCTGCAGCTTGCACCTTTGTAATTTGTTTCTTGTGACTTTTTTCCCCTATCTTAATAAACTTCGACTGGCTTCCGCCAGCCCGGCGAATTAG]
[+] EMBL AK061549 [AAGCTAGGCCAGCACGCGTACACGCGCGCCGCCGACCGCGGACGATGGCCACGCATCACCATGGCGCTAATCCACCACCACCTCGCCGTTCCAGTGGCTCCCGCTCCTCCTCCTCGGGGTCTCGGTCCGGCCACCGCCGCCCGGCGGCTGACCCTTCACCGCCGCCGCCGTAGGAGTGGCGCCGCCGCCGGCAGGATGACAGTCACAGCTTCGTCGATGGTGGAGCCGGCAAGTGGGGAGGAGACGGCGGCGCGTTCGGCGGCGGACGTGGTGAGGGCGTTCTACGACGGCGTGAACCGGCGGGACCTGGCGGCGGTGGAGCCGCTCATCGCGGAGGGGTGCGTCTACGAGGACCTCGTCTTCCCCAACCCCTTCGTCGGCCGCGCCGAGATACTCGGCTTCTTCGCCGGATTCATGGGCTCCGTCAGCTCCGACCTCCGCTTCGTCATCGACGACATCTCCGCCGGCGACGACTCCCGCGCCGTCGGCGTCACCTGGCACCTCGATTGGAAGGGGCGGCCATTCCCATTCAGCAGGGGATGCAGCTTCTACCGCCTCCAGCTGGACGAGAAGCAGCAGCAGCTGCAGATCGTGTATGGGCGAGACTGCGTGGAGCCAGCAGTGAAGCCAGGGGAATCCGCGCTGCTCATCATCAGGGCCGTCACTTGGATCTTCGAACGCTTTCCACGCCTTGCAAACATGCTGACGAAGTGTGTGATTGGAAAGATCATCTGGAAGTCCCGGGCCCCTGCGAGATGTAAATTCTTCATGTATACCGCGATGCGGGGCGCCTGTTTGACGGCTGATAACTTGCAGCGGCGGGGTTGGCACCTAGCCCCGGTTTGTCACCTTTGCTCCCAAGATAGAGAGACATGCGCACACATCTTCCTCAGCTGTCGTTACACGCAGCAGGTGTGTGCGACTGTGCGTGGCCGCCTTGGTCTGTCCTCCACTACACCGTCGGCTGATCTTTCCTCCTGGTGGCGCTCCGCGCGGAAATCAATTTCTAAACAAGACCGTAAGACTTTCGATGCTGGAGTTATCTTGGTGACCTGAAGGAACGCAATGCTAGAATTTTCGACAACAAGGCCATTCCGGCGGCGCACTTATGTGCAGCAATGGAAGATGAATGGACCACTTGGGGTGCAGCAGGGCTGCTGTGTCCACTGCAAGCCGGAAGCAACCTGATGGCGAGAGAGCAACATTAAGCCGGTGGTGGTAGCTCGCTGCTCTGTAGTACAGACGTGCTTTAGTGTCTGGCAGGCAGCATCCTCTGTAGCCTGAATCTGCAGCTTGCACCTTTGTAATTTGTTTCTTGTGACTTTTTTCCCCTATCTTAATAAACTTCGACTGGCTTCCGCCAGCCCGGCGAATTAG]
consensusID : consensus_4106#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 808 fasta sequence
[TCGAATACAAGCTAGGCCAGCACGCGTACACGCGCGCCGCCGACCGCGGACGATGGCCACGCATCACCATGGCGCTAATCCACCACCACCTCGCCGTTCCAGTGGCTCCCGATCCTCCTCCTCGGGGTCTCGGTCCGGCCACCGCCGCCCGGCGGCTGACCCTTCACCGCCGCCGCCGTAGGAGTGGCGCCGCCGCCGGCAGGATGACAGTCACAGCTTCGTCGATGGTGGAGCCGGCAAGTGGGGAGGAGACGGCGGCGCGTTCGGCGGCGGACGTGGTGAGGGCGTTCTACGACGGCGTGAACCGGCGGGACCTGGCGGCGGTGGAGCCGCTCATCGCGGAGGGGTGCGTCTACGAGGACCTCGTCTTCCCCAACCCCTTCGTCGGCCGCGCCGAGATACTCGGCTTCTTCGCCGGATTCATGGGCTCCGTCAGCTCCGACCTCCGCTTCGTCATCGACGACATCTCCGCCGGCGACGACTCCCGCGCCGTCGGCGTCACCTGGCACCTCGATTGGAAGGGGCGGCCATTCCCATTCAGCAGGGGATGCAGCTTCTACCGCCTCCAGCTGGACGAGAAGCAGCAGCAGCTGCAGATCGTGTATGGGCGAGACTGCGTGGAGCCAGCAGTGAAGCCAGGGGAATCCGCGCTGCTCATCATCAGGGCCGTCACTTGGATCTTCGAACGCTTTCCACGCCTTGCAAACATGCTGTAACTAACTGGCCTTTAATTTTGTATGGTAACTAGTATTTATTTTCTCGTTATGTGCACTGTACTTTAGCTTATAAAAGAAATTGAAAGATTGAA]
[+] EMBL AK120937 [TCGAATACAAGCTAGGCCAGCACGCGTACACGCGCGCCGCCGACCGCGGACGATGGCCACGCATCACCATGGCGCTAATCCACCACCACCTCGCCGTTCCAGTGGCTCCCGATCCTCCTCCTCGGGGTCTCGGTCCGGCCACCGCCGCCCGGCGGCTGACCCTTCACCGCCGCCGCCGTAGGAGTGGCGCCGCCGCCGGCAGGATGACAGTCACAGCTTCGTCGATGGTGGAGCCGGCAAGTGGGGAGGAGACGGCGGCGCGTTCGGCGGCGGACGTGGTGAGGGCGTTCTACGACGGCGTGAACCGGCGGGACCTGGCGGCGGTGGAGCCGCTCATCGCGGAGGGGTGCGTCTACGAGGACCTCGTCTTCCCCAACCCCTTCGTCGGCCGCGCCGAGATACTCGGCTTCTTCGCCGGATTCATGGGCTCCGTCAGCTCCGACCTCCGCTTCGTCATCGACGACATCTCCGCCGGCGACGACTCCCGCGCCGTCGGCGTCACCTGGCACCTCGATTGGAAGGGGCGGCCATTCCCATTCAGCAGGGGATGCAGCTTCTACCGCCTCCAGCTGGACGAGAAGCAGCAGCAGCTGCAGATCGTGTATGGGCGAGACTGCGTGGAGCCAGCAGTGAAGCCAGGGGAATCCGCGCTGCTCATCATCAGGGCCGTCACTTGGATCTTCGAACGCTTTCCACGCCTTGCAAACATGCTGTAACTAACTGGCCTTTAATTTTGTATGGTAACTAGTATTTATTTTCTCGTTATGTGCACTGTACTTTAGCTTATAAAAGAAATTGAAAGATTGAA]
[+] EMBL AK067747 [ CGCATCACCATGGCGCTAATCCACCACCACCTCGCCGTTCCAGTGGCTCCCGCTCCTCCTCCTCGGGGTCTCGGTCCGGCCACCGCCGCCCGGCGGCTGACCCTTCACCGCCGCCGCCGTAGGAGTGGCGCCGCCGCCGGCAGGATGACAGTCACAGCTTCGTCGATGGTGGAGCCGGCAAGTGGGGAGGAGACGGCGGCGCGTTCGGCGGCGGACGTGGTGAGGGCGTTCTACGACGGCGTGAACCGGCGGGACCTGGCGGCGGTGGAGCCGCTCATCGCGGAGGGGTGCGTCTACGAGGACCTCGTCTTCCCCAACCCCTTCGTCGGCCGCGCCGAGATACTCGGCTTCTTCGCCGGATTCATGGGCTCCGTCAGCTCCGACCTCCGCTTCGTCATCGACGACATCTCCGCCGGCGACGACTCCCGCGCCGTCGGCGTCACCTGGCACCTCGATTGGAAGGGGCGGCCATTCCCATTCAGCAGGGGATGCAGCTTCTACCGCCTCCAGCTGGACGAGAAGCAGCAGCAGCTGCAGATCGTGTATGGGCGAGACTGCGTGGAGCCAGCAGTGAAGCCAGGGGAATCCGCGCTGCTCATCATCAGGGCCGTCACTTGGATCTTCGAACGCTTTCCACGCCTTGCAAACATGCTGTAACTAACTGGCCTTTAATTTTGTATGGTAACTAGTATTTATTTTCTCGTTATGTGCACTGTACTTTAGCTTATAAAAGAAATTGAAAGATTGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4106#0 --------AAGCTAGGCCAGCACGCGTACACGCGCGCCGCCGACCGCGGACGATGGCCAC 52
consensus_4106#1 TCGAATACAAGCTAGGCCAGCACGCGTACACGCGCGCCGCCGACCGCGGACGATGGCCAC 60
****************************************************
consensus_4106#0 GCATCACCATGGCGCTAATCCACCACCACCTCGCCGTTCCAGTGGCTCCCGCTCCTCCTC 112
consensus_4106#1 GCATCACCATGGCGCTAATCCACCACCACCTCGCCGTTCCAGTGGCTCCCGATCCTCCTC 120
*************************************************** ********
consensus_4106#0 CTCGGGGTCTCGGTCCGGCCACCGCCGCCCGGCGGCTGACCCTTCACCGCCGCCGCCGTA 172
consensus_4106#1 CTCGGGGTCTCGGTCCGGCCACCGCCGCCCGGCGGCTGACCCTTCACCGCCGCCGCCGTA 180
************************************************************
consensus_4106#0 GGAGTGGCGCCGCCGCCGGCAGGATGACAGTCACAGCTTCGTCGATGGTGGAGCCGGCAA 232
consensus_4106#1 GGAGTGGCGCCGCCGCCGGCAGGATGACAGTCACAGCTTCGTCGATGGTGGAGCCGGCAA 240
************************************************************
consensus_4106#0 GTGGGGAGGAGACGGCGGCGCGTTCGGCGGCGGACGTGGTGAGGGCGTTCTACGACGGCG 292
consensus_4106#1 GTGGGGAGGAGACGGCGGCGCGTTCGGCGGCGGACGTGGTGAGGGCGTTCTACGACGGCG 300
************************************************************
consensus_4106#0 TGAACCGGCGGGACCTGGCGGCGGTGGAGCCGCTCATCGCGGAGGGGTGCGTCTACGAGG 352
consensus_4106#1 TGAACCGGCGGGACCTGGCGGCGGTGGAGCCGCTCATCGCGGAGGGGTGCGTCTACGAGG 360
************************************************************
consensus_4106#0 ACCTCGTCTTCCCCAACCCCTTCGTCGGCCGCGCCGAGATACTCGGCTTCTTCGCCGGAT 412
consensus_4106#1 ACCTCGTCTTCCCCAACCCCTTCGTCGGCCGCGCCGAGATACTCGGCTTCTTCGCCGGAT 420
************************************************************
consensus_4106#0 TCATGGGCTCCGTCAGCTCCGACCTCCGCTTCGTCATCGACGACATCTCCGCCGGCGACG 472
consensus_4106#1 TCATGGGCTCCGTCAGCTCCGACCTCCGCTTCGTCATCGACGACATCTCCGCCGGCGACG 480
************************************************************
consensus_4106#0 ACTCCCGCGCCGTCGGCGTCACCTGGCACCTCGATTGGAAGGGGCGGCCATTCCCATTCA 532
consensus_4106#1 ACTCCCGCGCCGTCGGCGTCACCTGGCACCTCGATTGGAAGGGGCGGCCATTCCCATTCA 540
************************************************************
consensus_4106#0 GCAGGGGATGCAGCTTCTACCGCCTCCAGCTGGACGAGAAGCAGCAGCAGCTGCAGATCG 592
consensus_4106#1 GCAGGGGATGCAGCTTCTACCGCCTCCAGCTGGACGAGAAGCAGCAGCAGCTGCAGATCG 600
************************************************************
consensus_4106#0 TGTATGGGCGAGACTGCGTGGAGCCAGCAGTGAAGCCAGGGGAATCCGCGCTGCTCATCA 652
consensus_4106#1 TGTATGGGCGAGACTGCGTGGAGCCAGCAGTGAAGCCAGGGGAATCCGCGCTGCTCATCA 660
************************************************************
consensus_4106#0 TCAGGGCCGTCACTTGGATCTTCGAACGCTTTCCACGCCTTGCAAACATGCTGACGAAGT 712
consensus_4106#1 TCAGGGCCGTCACTTGGATCTTCGAACGCTTTCCACGCCTTGCAAACATGCTGT--AACT 718
***************************************************** ** *
consensus_4106#0 GTGTGATTGGAAAGATCATCTGGAAGTCCCGGGCCCCTGCGAGATGTAAATTCTTCATGT 772
consensus_4106#1 AACTGGCCTTTAATTTTGTATGGTAA----------CTAGTATTTATTTTCTCGTTATGT 768
** ** * * *** * ** * * * ** * ****
consensus_4106#0 ATACCGCGATGCGGGGCGCCTGTTTGACGGCTGATAACTTGCAGCGGCGGGGTTGGCACC 832
consensus_4106#1 GCACTGTACTTTAG--CTTATAAAAGA-AATTGAAAGATTGAA----------------- 808
** * * * * * ** *** * *** *
consensus_4106#0 TAGCCCCGGTTTGTCACCTTTGCTCCCAAGATAGAGAGACATGCGCACACATCTTCCTCA 892
consensus_4106#1 ------------------------------------------------------------
consensus_4106#0 GCTGTCGTTACACGCAGCAGGTGTGTGCGACTGTGCGTGGCCGCCTTGGTCTGTCCTCCA 952
consensus_4106#1 ------------------------------------------------------------
consensus_4106#0 CTACACCGTCGGCTGATCTTTCCTCCTGGTGGCGCTCCGCGCGGAAATCAATTTCTAAAC 1012
consensus_4106#1 ------------------------------------------------------------
consensus_4106#0 AAGACCGTAAGACTTTCGATGCTGGAGTTATCTTGGTGACCTGAAGGAACGCAATGCTAG 1072
consensus_4106#1 ------------------------------------------------------------
consensus_4106#0 AATTTTCGACAACAAGGCCATTCCGGCGGCGCACTTATGTGCAGCAATGGAAGATGAATG 1132
consensus_4106#1 ------------------------------------------------------------
consensus_4106#0 GACCACTTGGGGTGCAGCAGGGCTGCTGTGTCCACTGCAAGCCGGAAGCAACCTGATGGC 1192
consensus_4106#1 ------------------------------------------------------------
consensus_4106#0 GAGAGAGCAACATTAAGCCGGTGGTGGTAGCTCGCTGCTCTGTAGTACAGACGTGCTTTA 1252
consensus_4106#1 ------------------------------------------------------------
consensus_4106#0 GTGTCTGGCAGGCAGCATCCTCTGTAGCCTGAATCTGCAGCTTGCACCTTTGTAATTTGT 1312
consensus_4106#1 ------------------------------------------------------------
consensus_4106#0 TTCTTGTGACTTTTTTCCCCTATCTTAATAAACTTCGACTGGCTTCCGCCAGCCCGGCGA 1372
consensus_4106#1 ------------------------------------------------------------
consensus_4106#0 ATTAG 1377
consensus_4106#1 -----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||