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Oryza sativa
cluster # 4117 cluster # 4117       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4117#0 length = 1779 sequences # 3  

consensusID : consensus_4117#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1779
fasta sequence
                              [TCCCCTCCCGCGCCGGCCTCCCCCGCGGCGCTGCTCTGGCGGCGGCCGCGGCGGGTGGCTCCGACCACGTTCTGCTCCGCGCCGTCGCTCGGCCGCGTCGGGTGGCCGCGGCGGGAGGGTGCCGCCTGGCTGCTGTCGTTCCGCGCCGGCCCGGTTTCTTCCCCGTCGTCGGCGGCGGCGGGCGATCCTTCCCAGGCGCTCTCCGCGCTGCTCCCGCTCGTCGTCGCCGCCACCGCCGTCGCCGCGCTCGGCAACCCCGCTACCTTCTCATGGGTCTCCAAGGAGTACTACGCGCCTGCACTTGGCGGCATCATGCTCTCCATTGGCATCAAATTATCCATCGACGACTTCGCGTTGGCATTCAAGAGGCCGGTGCCTCTGACGATCGGCTATATGGCGCAGTACATTGTGAAGCCGCTGATGGGCGTGCTGATCGCGAGGGCCTTCGGGATGCCGTCGGCGTTCTTTGCAGGCTTTGTTCTTACTTGCTGCGTCTCCGGCGCGCAGCTGTCGAGCTATGCTAGCTTCCTGAGCAAAGGGGATGTTGCATTGAGCATTCTGTTGACAAGCTGCTCGACGATATCTTCGGTGGTTGTGACACCTGTTCTCACTGGACTGCTGATTGGTTCTGTGGTTCCTGTTGATGGGATCGCGATGGCGAAATCCATTTTGCAGGTGGTTCTTGTTCCTGTCACACTAGGTCTTCTTCTGAATACATATGCAAAAGCAGTCGTTAATGTCATTCAACCAGTAATGCCATTTGTTGCTATGTTGTGCACATCGCTTTGTATTGGAAGCCCTCTTGCTATCAACAGGAGCAAGATCTTATCTTCAGAAGGATTCCTGTTACTTCTCCCCATAGTGACTTTCCACATTGCTGCCTTCATTGTGGGTTACTGGATTTCCAAGTTGCCTATGTTGAGGCAAGAAGAGCCCGTTTGCAGAACTATTTCTGTATGTACCGGCATGCAGAGCTCCACCCTCGCTGGACTTCTTGCTACACAATTTCTTGGAAGTAGCCAGGCAGTTCCTGCAGCATGCTCAGTTGTTATCATGGCCATATTTGGTTTGACTCTAGCATCATACTGGGGAAATGGTTTGCGAATCAGAGATATCGGTTCGAGATTTGTTCCACAAGCTTCCGCAGGTGTGAGCTCATGATAAAGCTTTTGGGGTGCAGCATTTAGATTCGTTCATGGGCTCCCCCGTCAAGTTCCAGAATTCCTGAGCAATTGGAGGCTGTAGTACACAGAAGATGCCGTGCTCTTGCTGTGTAAATCCTCCATTAGCAACAAGAGATCA-GGAACTGCAAGCTGTGCATTTTTGAAGATAACCAGCAATAAGAACAGCCTTACTTAGATCGAAGGATGCTGGGATGGCACAGCAGTCAAATTATACCTTAGTACCATACAATATACTGTAGATTTCAGGATACTATGCGGTGTACCTAGCAAGCAGAGTCGCACTCTGCAGTGTTCTCAGTTGTGAGTGCCACAAGGTTGCGGGCAGAGTCCAATTACGATTGGCCGATTTGATTGCCATTCTACATCTAGAAGATGTCACAGTTGTTTCACATGGATCTCTTTCTCTGGTCCATTTCTTTGTCGTTTTTGGTACACATGAGCAGTCCATTTCTTCAGTTTGTCGCTGCATGTAGCCATGTAGATCGCGTGGGTAGTGACAGCAACGGCCAGAAAGGGAGATTTGAGATATTTTTCAGCTGTCTTGTAGAATTTGTAGGATCTCATGATAACCTTCAATAAAGAGTATTTCTTCCAT]

[+] EMBL AK121008             [TCCCCTCCCGCGCCGGCCTCCCCCGCGGCGCTGCTCTGGCGGCGGCCGCGGCGGGTGGCTCCGACCACGTTCTGCTCCGCGCCGTCGCTCGGCCGCGTCGGGTGGCCGCGGCGGGAGGGTGCCGCCTGGCTGCTGTCGTTCCGCGCCGGCCCGGTTTCTTCCCCGTCGTCGGCGGCGGCGGGCGATCCTTCCCAGGCGCTCTCCGCGCTGCTCCCGCTCGTCGTCGCCGCCACCGCCGTCGCCGCGCTCGGCAACCCCGCTACCTTCTCATGGGTCTCCAAGGAGTACTACGCGCCTGCACTTGGCGGCATCATGCTCTCCATTGGCATCAAATTATCCATCGACGACTTCGCGTTGGCATTCAAGAGGCCGGTGCCTCTGACGATCGGCTATATGGCGCAGTACATTGTGAAGCCGCTGATGGGCGTGCTGATCGCGAGGGCCTTCGGGATGCCGTCGGCGTTCTTTGCAGGCTTTGTTCTTACTTGCTGCGTCTCCGGCGCGCAGCTGTCGAGCTATGCTAGCTTCCTGAGCAAAGGGGATGTTGCATTGAGCATTCTGTTGACAAGCTGCTCGACGATATCTTCGGTGGTTGTGACACCTGTTCTCACTGGACTGCTGATTGGTTCTGTGGTTCCTGTTGATGGGATCGCGATGGCGAAATCCATTTTGCAGGTGGTTCTTGTTCCTGTCACACTAGGTCTTCTTCTGAATACATATGCAAAAGCAGTCGTTAATGTCATTCAACCAGTAATGCCATTTGTTGCTATGTTGTGCACATCGCTTTGTATTGGAAGCCCTCTTGCTATCAACAGGAGCAAGATCTTATCTTCAGAAGGATTCCTGTTACTTCTCCCCATAGTGACTTTCCACATTGCTGCCTTCATTGTGGGTTACTGGATTTCCAAGTTGCCTATGTTGAGGCAAGAAGAGCCCGTTTGCAGAACTATTTCTGTATGTACCGGCATGCAGAGCTCCACCCTCGCTGGACTTCTTGCTACACAATTTCTTGGAAGTAGCCAGGCAGTTCCTGCAGCATGCTCAGTTGTTATCATGGCCATATTTGGTTTGACTCTAGCATCATACTGGGGAAATGGTTTGCGAATCAGAGATATCGGTTCGAGATTTGTTCCACAAGCTTCCGCAGGTGTGAGCTCATGATAAAGCTTTTGGGGTGCAGCATTTAGATTCGTTCATGGGCTCCCCCGTCAAGTTCCAGAATTCCTGAGCAATTGGAGGCTGTAGTACACAGAAGATGCCGTGCTCTTGCTGTGTAAATCCTCCATTAGCAACAAGAGATCA GGAACTGCAAGCTGTGCATTTTTGAAGATAACCAGCAATAAGAACAGCCTTACTTAGATCGAAGGATGCTGGGATGGCACAGCAGTCAAATTATACCTTAGTACCATACAATATACTGTAGATTTCAGGATACTATGCGGTGTACCTAGCAAGCAGAGTCGCACTCTGCAGTGTTCTCAGTTGTGAGTGCCACAAGGTTGCGGGCAGAGTCCAATTACGATTGGCCGATTTGATTGCCATTCTACATCTAGAAGATGTCACAGTTGTTTCACATGGATCTCTTTCTCTGGTCCATTTCTTTGTCGTTTTTGGTACACATGAGCAGTCCATTTCTTCAGTTTGTCGCTGCATGTAGCCATGTAGATCGCGTGGGTAGTGACAGCAACGGCCAGAAAGGGAGATTTGAGATATTTTTCAGCTGTCTTGTAGAATTTGTAGGATCTCATGATAACCTTCAATAAAGAGTATTTCTTCCAT]
[+] EMBL CA753073             [                                                                                                                                                                                              CCCAGGCGCTCTCCGCGCTGCTCCCGCTCGTCGTCGCCGCCACCGCCGTCGCCGCGCTCGGCAACCCCGCTACCTTCTCATGGGTCTCCAAGGAGTACTACGCGCCTGCACTTGGCGGCATCATGCTCTCCATTGGCATCAAATTATCCATCGACGACTTCGCGTTGGCATGCAAGAGGCCGGTGCCTCTGACGATCGGCTATATGGCGCAGTACATTGTGAAGCCGCTGATGGGCGTGCTGATCGCGAGGGCCTTCGGGATGCCGTCGGCGTTCTTTGCAGGCTTTGTTCTTACTTGCTGCGTCTCCGGCGCGCAGCTGTCGAGCTATGCTAGCTTCCTGAGCAAAGGGGATGTTGCATTGAGCATTCTGTTGACAAGCTGCTCGACGATATCTTCGGTGGTTGTGACACCTGTTCTCACTGGACTGCTGATTGGTTCTGTGGTTCCTGTNGATGGGATCGCGATGGCGANATCCATNTTGCAGGTGGTTCTTGTNCCTGTCACACTAGGTCTTCTTCTGAATACATATGCAAAAGCAGTCGTNAATGTCATNC ACCAGTAATGCCATNNGTNGCTATGTAGTGCACATCGCTNTGTATTGGAAGCCCTC TGCTAT AACAGGAGCAGAATC TATC TCAG AGGA TNCTG TAC TCT CCCATAGT ACNTTCC CA TGCTGCC TCATg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CA753302             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GTCGTTAATGTCATTCAACCAGTAATGCCATTTGTTGCTATGTTGTGCACATCGCTTTGTATTGGAAGCCCTCTTGCTATCAACAGGAGCAAGATCTTATCTTCAGAAGGATTCCTGTTACTTCTCCCCATAGTGACTTTCCACATTGCTGCCTTCATTGTGGGTTACTGGATTTCCAAGTTGCCTATGTTGAGGCAAGAAGAGCCCGTTTGCAGAACTATTTCTGTATGTACCGGCATGCAGAGCTCCACCCTCGCTGGACTTCTTGCTACACAATTTCTTGGAAGTAGCCAGGCAGTTCCTGCAGCATGCTCAGTTGTTATCATGGCCATATTTGGTTTGACTCTAGCATCATACTGGGGAAATGGTTTGCGAATCAGAGATATCGGTTCGAGATTTGTTCCACAAGCTTCCGCAGGTGTTAGCTCATGATAAAGCTTTTGGGGTGCAGCATATAGATTCGTTCATGGGCTCCCCCGTCAAGTTCCAGAATTCCTGAGCAATTGGAGGCTGTAGTACACAGAAGATGCCGTGCTCTTGCTGTGTAAATCCTCCATTAGCAACAA AGATCACGAAACTGC AGCTGTGCA TTTTGAAGATAA CAGCAATAAGAACAGCCCTAC TAGATCG AGGATGCTGGGATGGC CAGCAGT  AATTATAC  TAGTcc                                                                                                                                                                                                                                                                                                                                                                                     ]


>consensus_4117#0 TCCCCTCCCGCGCCGGCCTCCCCCGCGGCGCTGCTCTGGCGGCGGCCGCGGCGGGTGGCT CCGACCACGTTCTGCTCCGCGCCGTCGCTCGGCCGCGTCGGGTGGCCGCGGCGGGAGGGT GCCGCCTGGCTGCTGTCGTTCCGCGCCGGCCCGGTTTCTTCCCCGTCGTCGGCGGCGGCG GGCGATCCTTCCCAGGCGCTCTCCGCGCTGCTCCCGCTCGTCGTCGCCGCCACCGCCGTC GCCGCGCTCGGCAACCCCGCTACCTTCTCATGGGTCTCCAAGGAGTACTACGCGCCTGCA CTTGGCGGCATCATGCTCTCCATTGGCATCAAATTATCCATCGACGACTTCGCGTTGGCA TTCAAGAGGCCGGTGCCTCTGACGATCGGCTATATGGCGCAGTACATTGTGAAGCCGCTG ATGGGCGTGCTGATCGCGAGGGCCTTCGGGATGCCGTCGGCGTTCTTTGCAGGCTTTGTT CTTACTTGCTGCGTCTCCGGCGCGCAGCTGTCGAGCTATGCTAGCTTCCTGAGCAAAGGG GATGTTGCATTGAGCATTCTGTTGACAAGCTGCTCGACGATATCTTCGGTGGTTGTGACA CCTGTTCTCACTGGACTGCTGATTGGTTCTGTGGTTCCTGTTGATGGGATCGCGATGGCG AAATCCATTTTGCAGGTGGTTCTTGTTCCTGTCACACTAGGTCTTCTTCTGAATACATAT GCAAAAGCAGTCGTTAATGTCATTCAACCAGTAATGCCATTTGTTGCTATGTTGTGCACA TCGCTTTGTATTGGAAGCCCTCTTGCTATCAACAGGAGCAAGATCTTATCTTCAGAAGGA TTCCTGTTACTTCTCCCCATAGTGACTTTCCACATTGCTGCCTTCATTGTGGGTTACTGG ATTTCCAAGTTGCCTATGTTGAGGCAAGAAGAGCCCGTTTGCAGAACTATTTCTGTATGT ACCGGCATGCAGAGCTCCACCCTCGCTGGACTTCTTGCTACACAATTTCTTGGAAGTAGC CAGGCAGTTCCTGCAGCATGCTCAGTTGTTATCATGGCCATATTTGGTTTGACTCTAGCA TCATACTGGGGAAATGGTTTGCGAATCAGAGATATCGGTTCGAGATTTGTTCCACAAGCT TCCGCAGGTGTGAGCTCATGATAAAGCTTTTGGGGTGCAGCATTTAGATTCGTTCATGGG CTCCCCCGTCAAGTTCCAGAATTCCTGAGCAATTGGAGGCTGTAGTACACAGAAGATGCC GTGCTCTTGCTGTGTAAATCCTCCATTAGCAACAAGAGATCAGGAACTGCAAGCTGTGCA TTTTTGAAGATAACCAGCAATAAGAACAGCCTTACTTAGATCGAAGGATGCTGGGATGGC ACAGCAGTCAAATTATACCTTAGTACCATACAATATACTGTAGATTTCAGGATACTATGC GGTGTACCTAGCAAGCAGAGTCGCACTCTGCAGTGTTCTCAGTTGTGAGTGCCACAAGGT TGCGGGCAGAGTCCAATTACGATTGGCCGATTTGATTGCCATTCTACATCTAGAAGATGT CACAGTTGTTTCACATGGATCTCTTTCTCTGGTCCATTTCTTTGTCGTTTTTGGTACACA TGAGCAGTCCATTTCTTCAGTTTGTCGCTGCATGTAGCCATGTAGATCGCGTGGGTAGTG ACAGCAACGGCCAGAAAGGGAGATTTGAGATATTTTTCAGCTGTCTTGTAGAATTTGTAG GATCTCATGATAACCTTCAATAAAGAGTATTTCTTCCAT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)