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Oryza sativa
cluster # 4134 cluster # 4134       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4134#0 length = 2246 sequences # 3  

consensusID : consensus_4134#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2246
fasta sequence
                              [TCTTCCTGCCTCGCGAGGTCTCGTGGTCGGGGGGTGGGGGGTTTGAATTCCGTTTCCAGATCTGCGCGTGCTTGGAGCTTTTCGTGCGGTTCTTCTTCTTTTTTTTGATCGGGATTTGGGAGGGAGGCCCGTTATCCAGGCCCAATTTGTCACCGATTTCTCCTCGCGAATCCACTGCTGCTTGCTGCTGTGCTGGCTACATTGTTGTTGTTGTTGGGTTAGGGATTCTTTGTCGGGGGGAAGCGCGGCCTGCCTGGAAATCGTCGGAGCTCGCTGAGATGTCGAGTTTTTGCGCATGAATTTCACCGTAGGGGGGGGGGGGGGGATGGGAGATCCGGAGAGAGGGCAACTTTTGATTCGTTCGTTTTGGGGGAGATATGTGATGTTGGACTTGGTGCGCTTAGATAATTGAATCTGAATATGTGCTTTGTGTAGTCGTGCGGAGAAATTTATCTTTCTTTGTCCAAAGAAAGCTCTACCACTAGCTACCTCTTCAGATAGGTTCTTGCAACTTTATAGTACTAGCTTAGCATCTTAAACTAGCCTCTTGCCGCTGTTTAGCTAACTAGGTGAGCTTGATTTTCAAGTCCTGTGTAACTGTGTCCCGCCAACTCAAGCAATACATAGGTTGTTAATTACTTCCTTCTCACCGATTATTTTGAGTTCGTGCCTACGAAGAACAAGAATGGGTTGGCTTGCATTGCATGAGGATAATAAGGAAGATATGACTCTTAAACTTATCTGGAGTTGCTGAAATCACTCCTAGTAGGGAGTAAAGTTACCAACTAAGTTTGCACGAGTCATTCTGGTCCAATTAAATTTGCATGTGATACCCCTTCTTTTCTTGAAATTTGTCGGGAAAACAACGTAGCACATGGTTCTGCTCATGAAGTTTGCACTTTCGGTGGCAAATAAAATTTAATTTAAATTGTGTACTTTAAGCATTTTTACTGAGGAGTGAGAAGATATGTTCCCCATTCTAAGTTTCCATAATATTCCTGGATGACATTTATAGTTTTGTTATTTCATCTGTGCCCCAGTTACTATAACCTGGTTTGCTAATTTGTTATCAAGAAATCATGTTGTCTTTCTTTTATCTTCCTGTTTTGTTAAATAGGCCACTGTAGTGATACTGGTTTGTTATTGTCCGTGTATAAGTCACTTTCGAGTTTTTTTTTTGGCCAAATGATTGTTATACTGACTTCTGCTGTTACCATGTTACTATTTGACAGATTTTGTGAGTTCTAGCTACTAGCCAAGAAGCATGACTGAGGAAACTGGCAACGACTTCCAGATGGTTCAAGGTTATGAGATTGTCCCAAGCAATGAGGAAGCTCATGCTGAGGAAGTTCAGGGTGATGAATTGGTCCTTGCGGAGGACTTAGCTCAAGGTGACGAGGTCCAAGTAAATGGATTGGTCAGTGCTGAGATGAGTACCCCTCCAACATCAAGGCGCCGTAGGAAGAAGTCTCTAGTGTGGGAGCACTTCACTATTGAAGCTGTCTCTGGAGGGGCTACACGGGCGTGCTGCAAACTGTGTAAGCAAACTTTTGCTTACAGCTCTGGTTCAAAAATTGCGGGTACTAGCCATCTCAAGAGGCACATTACCTTGGGTTCATGTCCTATAATTAAGAACCAAGAGCACAAGCTAGCACTGACTCCAGCTGTAGGGACTGACAATGATGGCGAGGGCACTGTGGAGCGCCCGTCTAAGAGGCGTTACAGATATACTGGTTATGCAAATGCTGCTTTTGATCAAGACCGCAGTTGTTCATATCTGGCGAAGATGATCATTTTGCATGACTATCCACTTCACATTGTTCAACAGCCAGCCTTCACTACCTTTATTGACAGTCTGCAGCCACGTTTCAGGGTTGTAGATGTTGAGACAATGGAGGGGGAGGTGTATGCTGTTTACCAGAAAGAAAAGGAAAACCTCATGCAAGCATTCAGCACTATGCCTGGAAGGATCAGCCTCACCATTGGATTGTGGACAACTAGCCAAACTCTTGGCTATGTTTCACTTGCTGGGCAGTTTATTGACTCTGAGTGGAAGATACATCGAAGAATGCTAAACTTCATGATGGTGTCTTCTCCTCATTCAGAGAATGCACTTAGTGAAGCTATTAGTGCAAGCCTTTCGGACTGGAATATGAAGGACAAACTGTTCACCATCACATTGGACAATGATTGCTCATCACA-TGATATATACAGTGCAAATCTGAGGGATTATCTCTCCAACAAGA]

[+] EMBL AK121128             [TCTTCCTGCCTCGCGAGGTCTCGTGGTCGGGGGGTGGGGGGTTTGAATTCCGTTTCCAGATCTGCGCGTGCTTGGAGCTTTTCGTGCGGTTCTTCTTCTTTTTTTTGATCGGGATTTGGGAGGGAGGCCCGTTATCCAGGCCCAATTTGTCACCGATTTCTCCTCGCGAATCCACTGCTGCTTGCTGCTGTGCTGGCTACATTGTTGTTGTTGTTGGGTTAGGGATTCTTTGTCGGGGGGAAGCGCGGCCTGCCTGGAAATCGTCGGAGCTCGCTGAGATGTCGAGTTTTTGCGCATGAATTTCACCGTAGGGGGGGGGGGGGGGATGGGAGATCCGGAGAGAGGGCAACTTTTGATTCGTTCGTTTTGGGGGAGATATGTGATGTTGGACTTGGTGCGCTTAGATAATTGAATCTGAATATGTGCTTTGTGTAGTCGTGCGGAGAAATTTATCTTTCTTTGTCCAAAGAAAGCTCTACCACTAGCTACCTCTTCAGATAGGTTCTTGCAACTTTATAGTACTAGCTTAGCATCTTAAACTAGCCTCTTGCCGCTGTTTAGCTAACTAGGTGAGCTTGATTTTCAAGTCCTGTGTAACTGTGTCCCGCCAACTCAAGCAATACATAGGTTGTTAATTACTTCCTTCTCACCGATTATTTTGAGTTCGTGCCTACGAAGAACAAGAATGGGTTGGCTTGCATTGCATGAGGATAATAAGGAAGATATGACTCTTAAACTTATCTGGAGTTGCTGAAATCACTCCTAGTAGGGAGTAAAGTTACCAACTAAGTTTGCACGAGTCATTCTGGTCCAATTAAATTTGCATGTGATACCCCTTCTTTTCTTGAAATTTGTCGGGAAAACAACGTAGCACATGGTTCTGCTCATGAAGTTTGCACTTTCGGTGGCAAATAAAATTTAATTTAAATTGTGTACTTTAAGCATTTTTACTGAGGAGTGAGAAGATATGTTCCCCATTCTAAGTTTCCATAATATTCCTGGATGACATTTATAGTTTTGTTATTTCATCTGTGCCCCAGTTACTATAACCTGGTTTGCTAATTTGTTATCAAGAAATCATGTTGTCTTTCTTTTATCTTCCTGTTTTGTTAAATAGGCCACTGTAGTGATACTGGTTTGTTATTGTCCGTGTATAAGTCACTTTCGAGTTTTTTTTTTGGCCAAATGATTGTTATACTGACTTCTGCTGTTACCATGTTACTATTTGACAGATTTTGTGAGTTCTAGCTACTAGCCAAGAAGCATGACTGAGGAAACTGGCAACGACTTCCAGATGGTTCAAGGTTATGAGATTGTCCCAAGCAATGAGGAAGCTCATGCTGAGGAAGTTCAGGGTGATGAATTGGTCCTTGCGGAGGACTTAGCTCAAGGTGACGAGGTCCAAGTAAATGGATTGGTCAGTGCTGAGATGAGTACCCCTCCAACATCAAGGCGCCGTAGGAAGAAGTCTCTAGTGTGGGAGCACTTCACTATTGAAGCTGTCTCTGGAGGGGCTACACGGGCGTGCTGCAAACTGTGTAAGCAAACTTTTGCTTACAGCTCTGGTTCAAAAATTGCGGGTACTAGCCATCTCAAGAGGCACATTACCTTGGGTTCATGTCCTATAATTAAGAACCAAGAGCACAAGCTAGCACTGACTCCAGCTGTAGGGACTGACAATGATGGCGAGGGCACTGTGGAGCGCCCGTCTAAGAGGCGTTACAGATATACTGGTTATGCAAATGCTGCTTTTGATCAAGACCGCAGTTGTTCATATCTGGCGAAGATGATCATTTTGCATGACTATCCACTTCACATTGTTCAACAGCCAGCCTTCACTACCTTTATTGACAGTCTGCAGCCACGTTTCAGGGTTGTAGATGTTGAGACAATGGAGGGGGAGGTGTATGCTGTTTACCAGAAAGAAAAGGAAAACCTCATGCAAGCATTCAGCACTATGCCTGGAAGGATTAGCCTCACTATTGGATTGTGGACAACTAGCCAAACTCTTGGCTATGTTTCACTTGCTGGGCAGTTTATTGACTCTGAGTGGAAGATACATCGAAGAATGCTAAACTTCATGATGGTGTCTTCTCCTCATTCAGAGAATGCACTTAGTGAAGCTATTAGTACAAGCCTTTCAGACTGGAATATGAAGGACAAACTATTCACCATCACATTGGACAATGATTGCTCATCACA TGATATATATAGTGCGAATCTGAGGGATTATCTCTCCAACAAG ]
[-] EMBL CF568772             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AGGGTTGTAGATGTTGAGACAATGAAGGGGAAGGTGTATGCTGTTTACCAGAAAGAAAAGGAAACCCTCACGCAAGCATTCAGCACTATGCCT GAAGGATCAGCCTCACCATTGGATTGTGGACAACTAGCCAAACTCTTGGCTATGTTTCACTTGCTGGGCAGTTTATTGACTCTGAGTGGAAGATACATCGAAGAATGCTAAACTTCATGATGGTGTCTTCTCCTCATTCAGAGAATGCACTTAGTGAAGCTATTAGTGCAAGCCTTTCGGACTGGAATATGAAGGACAAACTGTTCACCATCACATTGGACAATGATTGCTCATCACA TGATATATACAGTGCAAATCTGAGGGATTATCTCTCCAACAAGA]
[+] EMBL OSC100171            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GCAAGCATTCAGCACTATGCCTGGAAGGATCAGCCTCACCATTGGATTGTGGACAACTAGCCAAACTCTTGGCTATGTTTCACTTTCTGGGCAGTTTATTGACTCTGAGTGGAAGATACATCGAAGAATGCTAAACTTCATGATGGTGTCTTCTCCTCATTCAGAGAATGCACTTAGTGAAGCTATTAGTGCAAGCCTTTCGGACTGGAATATGAAGGNCAAACTGTTCACCATCACATTGGACAATGATTGCTCATCACATTGATATATACAGTGCAAATCTGAGGGATTATCTCTCCAACAAG ]


>consensus_4134#0 TCTTCCTGCCTCGCGAGGTCTCGTGGTCGGGGGGTGGGGGGTTTGAATTCCGTTTCCAGA TCTGCGCGTGCTTGGAGCTTTTCGTGCGGTTCTTCTTCTTTTTTTTGATCGGGATTTGGG AGGGAGGCCCGTTATCCAGGCCCAATTTGTCACCGATTTCTCCTCGCGAATCCACTGCTG CTTGCTGCTGTGCTGGCTACATTGTTGTTGTTGTTGGGTTAGGGATTCTTTGTCGGGGGG AAGCGCGGCCTGCCTGGAAATCGTCGGAGCTCGCTGAGATGTCGAGTTTTTGCGCATGAA TTTCACCGTAGGGGGGGGGGGGGGGATGGGAGATCCGGAGAGAGGGCAACTTTTGATTCG TTCGTTTTGGGGGAGATATGTGATGTTGGACTTGGTGCGCTTAGATAATTGAATCTGAAT ATGTGCTTTGTGTAGTCGTGCGGAGAAATTTATCTTTCTTTGTCCAAAGAAAGCTCTACC ACTAGCTACCTCTTCAGATAGGTTCTTGCAACTTTATAGTACTAGCTTAGCATCTTAAAC TAGCCTCTTGCCGCTGTTTAGCTAACTAGGTGAGCTTGATTTTCAAGTCCTGTGTAACTG TGTCCCGCCAACTCAAGCAATACATAGGTTGTTAATTACTTCCTTCTCACCGATTATTTT GAGTTCGTGCCTACGAAGAACAAGAATGGGTTGGCTTGCATTGCATGAGGATAATAAGGA AGATATGACTCTTAAACTTATCTGGAGTTGCTGAAATCACTCCTAGTAGGGAGTAAAGTT ACCAACTAAGTTTGCACGAGTCATTCTGGTCCAATTAAATTTGCATGTGATACCCCTTCT TTTCTTGAAATTTGTCGGGAAAACAACGTAGCACATGGTTCTGCTCATGAAGTTTGCACT TTCGGTGGCAAATAAAATTTAATTTAAATTGTGTACTTTAAGCATTTTTACTGAGGAGTG AGAAGATATGTTCCCCATTCTAAGTTTCCATAATATTCCTGGATGACATTTATAGTTTTG TTATTTCATCTGTGCCCCAGTTACTATAACCTGGTTTGCTAATTTGTTATCAAGAAATCA TGTTGTCTTTCTTTTATCTTCCTGTTTTGTTAAATAGGCCACTGTAGTGATACTGGTTTG TTATTGTCCGTGTATAAGTCACTTTCGAGTTTTTTTTTTGGCCAAATGATTGTTATACTG ACTTCTGCTGTTACCATGTTACTATTTGACAGATTTTGTGAGTTCTAGCTACTAGCCAAG AAGCATGACTGAGGAAACTGGCAACGACTTCCAGATGGTTCAAGGTTATGAGATTGTCCC AAGCAATGAGGAAGCTCATGCTGAGGAAGTTCAGGGTGATGAATTGGTCCTTGCGGAGGA CTTAGCTCAAGGTGACGAGGTCCAAGTAAATGGATTGGTCAGTGCTGAGATGAGTACCCC TCCAACATCAAGGCGCCGTAGGAAGAAGTCTCTAGTGTGGGAGCACTTCACTATTGAAGC TGTCTCTGGAGGGGCTACACGGGCGTGCTGCAAACTGTGTAAGCAAACTTTTGCTTACAG CTCTGGTTCAAAAATTGCGGGTACTAGCCATCTCAAGAGGCACATTACCTTGGGTTCATG TCCTATAATTAAGAACCAAGAGCACAAGCTAGCACTGACTCCAGCTGTAGGGACTGACAA TGATGGCGAGGGCACTGTGGAGCGCCCGTCTAAGAGGCGTTACAGATATACTGGTTATGC AAATGCTGCTTTTGATCAAGACCGCAGTTGTTCATATCTGGCGAAGATGATCATTTTGCA TGACTATCCACTTCACATTGTTCAACAGCCAGCCTTCACTACCTTTATTGACAGTCTGCA GCCACGTTTCAGGGTTGTAGATGTTGAGACAATGGAGGGGGAGGTGTATGCTGTTTACCA GAAAGAAAAGGAAAACCTCATGCAAGCATTCAGCACTATGCCTGGAAGGATCAGCCTCAC CATTGGATTGTGGACAACTAGCCAAACTCTTGGCTATGTTTCACTTGCTGGGCAGTTTAT TGACTCTGAGTGGAAGATACATCGAAGAATGCTAAACTTCATGATGGTGTCTTCTCCTCA TTCAGAGAATGCACTTAGTGAAGCTATTAGTGCAAGCCTTTCGGACTGGAATATGAAGGA CAAACTGTTCACCATCACATTGGACAATGATTGCTCATCACATGATATATACAGTGCAAA TCTGAGGGATTATCTCTCCAACAAGA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)