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Oryza sativa
cluster # 4140 cluster # 4140       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4140#0 length = 1820 sequences # 3  

consensusID : consensus_4140#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1820
fasta sequence
                              [TCTACTCTGTATTGCCTGAGCACGGAAGTTCGGCACATAAGCTGCATACCCCAGCTCGGCGTCTTTCTAGGATGTACATTCATGCATCAAAGTTTTGGTCCTCAGATAAGATAGCTTCGGTGGCAAAAAGCACTGTGTCTGGCCTAGTGCTTGTTGCGAAATCATGCAGTAACGATGCATCAAGATTGACATTCTGGCTGTCCAATACAGTTGTGCTAAGGGAGATAATTGCACAAACTATTGGTATCTCATGCCAATCGTCTTCAACCATTACAGCCATCAACATGAATGGTAGTGCAAAAAGTCTTGATGGGAGATCGATGCCAATGCTATGGACAAATAGCTCCAGTGGCAAACAAACCAAATTTACTGGCATGCAGGTACCGGATGATTGGCATGAAACAAGTACACTTTTGGCTGCATTGGAGAAGATTGAATCATGGATATTTTCTCGGATAGTAGAAACAGTGTGGTGGCAGGCACTAACTCCTCACATGCAAACTCCGGTGGAAGGATCGTCAACCCCAAAGACTGGGAGAGTGTTAGGTCCTTCTTTGGGTGATCAGCAGCAAGGCACCTTTTCTGTTAACCTGTGGAAGGCTGCATTTCACGATGCATTCAACAGAATATGCCCCCTCCGTGCTGGTGGACATGAATGTGGCTGTTTACCAGTATTGGCAAAATTGGTGATGGAGCAATGTGTAGGCCGTTTAGATGTTGCAATGTTTAATGCAATCCTTCGTGAATCGGCTAGTGAGATACCCACTGATCCTATATCTGACCCAATTGTTGACCCAAAAGTCCTGCCGATTCCAGCTGGTGATCTAAGCTTTGGGTCAGGCGCTCAGCTGAAGAATTCTATCGGAAATTGGTCGAGATGGTTAACAGATAACTTTGGAATCGACGCTGATGACTCAGAGGAGGATGGTACCGACACAGGAAGTGAAAGAAGTGCAGCTGAATCAAAGTCTTTTCAACTGCTTAATGAATTGAGTGATCTCCTTATGCTCCCAAAGGACATGCTTATAGAAAAATCTATCAGGAAAGAGATCTGCCCTTCGATTGGCCTCCCGTTAGTAACAAGAATCCTATGCAACTTCACTCCTGATGAGTTCTGTCCTGATCCTGTTCCTAGCATAGTCCTAGAGGAGCTGAATTCTGAGAGTTTGCT-GGAGCGAT-GCACC-GACAAAAG-TGCAA--CCA-GCGCATTTCC--ATGTATCGCTG-CT-CCTGTTGT-GTACC---GCCCT-CCATCCCTACTGGATGTGGCAGAG-AAAGTGGCGGACACTGGTGGCAATGCAAAGCTAGACAGGAGAGCGTCAATGGTCCAGAGGAGAGGATACACCAGTGATGATGATCTGGATGACCTGGATTCTCCCCTCGCATCCCTTATCGACAAAAGCGCTCCGCCTTTGCTGTCTAAAGGTAGCGCGCATTTTACTGCTCAAAGAGGAGTTTCCATGGAGAATGCCAGATACACATTCCTGAGAGAGGTATGGTTGGAGAGGCAGTGATTGGTGAACCTGTACAAATCCAGAATCTCTTCTTTAGCTACCTTAAAAAGGGTTGGGAAGGAAAACCTGCTGAGGTGAAACCTTTGAGA-G-AAGTTGCTCACTTGCAGAGCTAGTTAACTAAACAAGAATGGCTACTGTCAAAATGCAAACAATTTCGTGTACATTCATATACATATGTTGTTCGTTTGTAGTATAATAGAAGCAAGCCAGAAATGAACTTTCTCTGTTGTCTGTTGGAACTAAAGAATGTGATGTCCCATGGGAAACGAAAAGATGTTCTACCTGGACAACATTATGTAGGCCAGATTCTGATGC]

[+] EMBL AK067190             [TCTACTCTGTATTGCCTGAGCACGGAAGTTCGGCACATAAGCTGCATACCCCAGCTCGGCGTCTTTCTAGGATGTACATTCATGCATCAAAGTTTTGGTCCTCAGATAAGATAGCTTCGGTGGCAAAAAGCACTGTGTCTGGCCTAGTGCTTGTTGCGAAATCATGCAGTAACGATGCATCAAGATTGACATTCTGGCTGTCCAATACAGTTGTGCTAAGGGAGATAATTGCACAAACTATTGGTATCTCATGCCAATCGTCTTCAACCATTACAGCCATCAACATGAATGGTAGTGCAAAAAGTCTTGATGGGAGATCGATGCCAATGCTATGGACAAATAGCTCCAGTGGCAAACAAACCAAATTTACTGGCATGCAGGTACCGGATGATTGGCATGAAACAAGTACACTTTTGGCTGCATTGGAGAAGATTGAATCATGGATATTTTCTCGGATAGTAGAAACAGTGTGGTGGCAGGCACTAACTCCTCACATGCAAACTCCGGTGGAAGGATCGTCAACCCCAAAGACTGGGAGAGTGTTAGGTCCTTCTTTGGGTGATCAGCAGCAAGGCACCTTTTCTGTTAACCTGTGGAAGGCTGCATTTCACGATGCATTCAACAGAATATGCCCCCTCCGTGCTGGTGGACATGAATGTGGCTGTTTACCAGTATTGGCAAAATTGGTGATGGAGCAATGTGTAGGCCGTTTAGATGTTGCAATGTTTAATGCAATCCTTCGTGAATCGGCTAGTGAGATACCCACTGATCCTATATCTGACCCAATTGTTGACCCAAAAGTCCTGCCGATTCCAGCTGGTGATCTAAGCTTTGGGTCAGGCGCTCAGCTGAAGAATTCTATCGGAAATTGGTCGAGATGGTTAACAGATAACTTTGGAATCGACGCTGATGACTCAGAGGAGGATGGTACCGACACAGGAAGTGAAAGAAGTGCAGCTGAATCAAAGTCTTTTCAACTGCTTAATGAATTGAGTGATCTCCTTATGCTCCCAAAGGACATGCTTATAGAAAAATCTATCAGGAAAGAGATCTGCCCTTCGATTGGCCTCCCGTTAGTAACAAGAATCCTATGCAACTTCACTCCTGATGAGTTCTGTCCTGATCCTGTTCCTAGCATAGTCCTAGAGGAGCTGAATTCTGAGAGTTTGCT GGAGCGAT GCACC GACAAAAG TGCAA  CCA GCGCATTTCC  ATGTATCGCTG CT CCTGTTGT GTACC   GCCCT CCATCCCTACTGGATGTGGCAGAG AAAGTGGCGGACACTGGTGGCAATGCAAAGCTAGACAGGAGAGCGTCAATGGTCCAGAGGAGAGGATACACCAGTGATGATGATCTGGATGACCTGGATTCTCCCCTCGCATCCCTTATCGACAAAAGCGCTCCGCCTTTGCTGTCTAAAGGTAGCGCGCATTTTACTGCTCAAAGAGGAGTTTCCATGGAGAATGCCAGATACACATTCCTGAGAGAGGTATGGTTGGAGAGGCAGTGATTGGTGAACCTGTACAAATCCAGAATCTCTTCTTTAGCTACCTTAAAAAGGGTTGGGAAGGAAAACCTGCTGAGGTGAAACCTTTGAGA G AAGTTGCTCACTTGCAGAGCTAGTTAACTAAACAAGAATGGCTACTGTCAAAATGCAAACAATTTCGTGTACATTCATATACATATGTTGTTCGTTTGTAGTATAATAGAAGCAAGCCAGAAATGAACTTTCTCTGTTGTCTGTTGGAACTAAAGAATGTGATGTCCCATGGGAAACGAAAAGATGTTCTACCTGGACAACATTATGTAGGCCAGATTCTGATGC]
[+] EMBL CB641329             [                                                          GCGTCTTTCTAGGATGTACATTCATGCATCAAAGTTTTGGTCCTCAGATAAGATAGCTTCGGTGGCAAAAAGCACTGTGTCTGGCCTAGTGCTTGTTGCGAAATCATGCAGTAACGATGCATCAAGATTGACATTCTGGCTGTCCAATACAGTTGTGCTAAGGGAGATAATTGCACAAACTATTGGTATCTCATGCCAATCGTCTTCAACCATTACAGCCATCAACATGAATGGTAGTGCAAAAAGTCTTGATGGGAGATCGATGCCAATGCTATGGACAAATAGCTCCAGTGGCAAACAAACCAAATTTACTGGCATGCAGGTACCGGATGATTGGCATGAAACAAGTACACTTTTGGCTGCATTGGAGAAGATTGAATCATGGATATTTTCTCGGATAGTAGAAACAGTGTGGTGGCAGGCACTAACTCCTCACATGCAAACTCCGGTGGAAGGATCGTCAACCCCAAAGACTGGGAGAGTGTTAGGTCCTTCTTTGGGTGATCAGCAGCAAGGCACCTTTTCTGTTAACCTGTGGAAGGCTGCATTTCACGATGCATTCAACAGAATATGCCCCCTCCGTGCTGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BM037878             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TGAGA TTTGCTGGGACCGATGGCACCNGACCAAAGTTGCAAACCCAGGCGCATTTCCCAATGTATTCCTGCCTCCCTGTTGTGGTACCCCNCCCCTCCCATCCCTACTGGATGTGGCAGAGAAAAGTGGCGGACACTGGTGGCAATGCAAAGCTAGACAGGAGAGCGTCAATGGTCCAGAGGAGAGGATACACCAGTGATGATGATCTGGATGACCTGGATTCTCCCCTCGCATCCCTTATCGACAAAAGCGCTCCGCCTTTGCTGTCTAAAGGTAGCGCGCATTTTACTGCTCAAAGAGGAGTTTCCATGGAGAATGCCAGATACACATTCCTGAGAGAGGTATGGTTGGAGAGGCAGTGATTGGTGAACCTGTACAAATCCAGAATCTCTTCTTTAGCTACCTTAAAAAGGGTTGGGAAGGAAAACCTGCTGAGGTGAAACCTTTGAGACGCAAGTTGCTCACTTGCAGAGCTAGTTAACTAAACAAGAATGGCTACTGTCAAAATGCAAACAATTTCGTGTACATTCATATACATATGTTGTTCGTTTGTAGTATAATAGAAGCAAGCCAGAAATGAACTTTCTCTGT                                                                                        ]


>consensus_4140#0 TCTACTCTGTATTGCCTGAGCACGGAAGTTCGGCACATAAGCTGCATACCCCAGCTCGGC GTCTTTCTAGGATGTACATTCATGCATCAAAGTTTTGGTCCTCAGATAAGATAGCTTCGG TGGCAAAAAGCACTGTGTCTGGCCTAGTGCTTGTTGCGAAATCATGCAGTAACGATGCAT CAAGATTGACATTCTGGCTGTCCAATACAGTTGTGCTAAGGGAGATAATTGCACAAACTA TTGGTATCTCATGCCAATCGTCTTCAACCATTACAGCCATCAACATGAATGGTAGTGCAA AAAGTCTTGATGGGAGATCGATGCCAATGCTATGGACAAATAGCTCCAGTGGCAAACAAA CCAAATTTACTGGCATGCAGGTACCGGATGATTGGCATGAAACAAGTACACTTTTGGCTG CATTGGAGAAGATTGAATCATGGATATTTTCTCGGATAGTAGAAACAGTGTGGTGGCAGG CACTAACTCCTCACATGCAAACTCCGGTGGAAGGATCGTCAACCCCAAAGACTGGGAGAG TGTTAGGTCCTTCTTTGGGTGATCAGCAGCAAGGCACCTTTTCTGTTAACCTGTGGAAGG CTGCATTTCACGATGCATTCAACAGAATATGCCCCCTCCGTGCTGGTGGACATGAATGTG GCTGTTTACCAGTATTGGCAAAATTGGTGATGGAGCAATGTGTAGGCCGTTTAGATGTTG CAATGTTTAATGCAATCCTTCGTGAATCGGCTAGTGAGATACCCACTGATCCTATATCTG ACCCAATTGTTGACCCAAAAGTCCTGCCGATTCCAGCTGGTGATCTAAGCTTTGGGTCAG GCGCTCAGCTGAAGAATTCTATCGGAAATTGGTCGAGATGGTTAACAGATAACTTTGGAA TCGACGCTGATGACTCAGAGGAGGATGGTACCGACACAGGAAGTGAAAGAAGTGCAGCTG AATCAAAGTCTTTTCAACTGCTTAATGAATTGAGTGATCTCCTTATGCTCCCAAAGGACA TGCTTATAGAAAAATCTATCAGGAAAGAGATCTGCCCTTCGATTGGCCTCCCGTTAGTAA CAAGAATCCTATGCAACTTCACTCCTGATGAGTTCTGTCCTGATCCTGTTCCTAGCATAG TCCTAGAGGAGCTGAATTCTGAGAGTTTGCTGGAGCGATGCACCGACAAAAGTGCAACCA GCGCATTTCCATGTATCGCTGCTCCTGTTGTGTACCGCCCTCCATCCCTACTGGATGTGG CAGAGAAAGTGGCGGACACTGGTGGCAATGCAAAGCTAGACAGGAGAGCGTCAATGGTCC AGAGGAGAGGATACACCAGTGATGATGATCTGGATGACCTGGATTCTCCCCTCGCATCCC TTATCGACAAAAGCGCTCCGCCTTTGCTGTCTAAAGGTAGCGCGCATTTTACTGCTCAAA GAGGAGTTTCCATGGAGAATGCCAGATACACATTCCTGAGAGAGGTATGGTTGGAGAGGC AGTGATTGGTGAACCTGTACAAATCCAGAATCTCTTCTTTAGCTACCTTAAAAAGGGTTG GGAAGGAAAACCTGCTGAGGTGAAACCTTTGAGAGAAGTTGCTCACTTGCAGAGCTAGTT AACTAAACAAGAATGGCTACTGTCAAAATGCAAACAATTTCGTGTACATTCATATACATA TGTTGTTCGTTTGTAGTATAATAGAAGCAAGCCAGAAATGAACTTTCTCTGTTGTCTGTT GGAACTAAAGAATGTGATGTCCCATGGGAAACGAAAAGATGTTCTACCTGGACAACATTA TGTAGGCCAGATTCTGATGC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)