cluster # 4141

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Oryza sativa
cluster # 4141 cluster # 4141 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4141#0 length = 557 sequences # 2

consensus_4141#1 length = 266 sequences # 1

consensusID : consensus_4141#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 557
fasta sequence

                              [CCAAAATCGGAGGTAGCTACAGCCGAATCCCCCAACAGTTGTGTGCAATTTCTTGCTTGCTTGGTTTTCTTTTCCCCCCACTCGGATCGATCTCGTTGTTGTGTGAGGTTTTTTGAGCTTTGGTCGATGGCGTCGATCGTGCTGCTGCTGTCGGAGCTGCTCGGCGGCGAGAGCACCAGCGTAATGGCGGCTGACTGGTACATGAGCGGACACAGCCTCCGGGAGTTCCGGCCCGTGGCGGCTGCTCCGGCGGCGGCGGCGGCGGTGGCCAAGTGCGAGCGGCCGGCGGCCGAGGCAGCGGGGGAGAAGAAGAAGGAGGAGTCGTTCGAGGATCTCGCCGCCGTGTCCCGGATCGCGGTCGACGTGATGTGGCCTTAGAGC-ATCCGTCGCCGCCATCTCGCCGGAGAAGAAGAAAAAGAAAATTCTATTCTTGAGTTTTTTTTCTCTATTTTTCTCCTTTTTTTTTGGTTGCCAACGAGGCATGTGTTGTGTACTGTTCTTTTTGAGATCAGATTTGTAAATAT-ACGAAGTGATTCTTGGAAAAAAAAAAAAAAAAA]

[+] EMBL AK121188             [CCAAAATCGGAGGTAGCTACAGCCGAATCCCCCAACAGTTGTGTGCAATTTCTTGCTTGCTTGGTTTTCTTTTCCCCCCACTCGGATCGATCTCGTTGTTGTGTGAGGTTTTTTGAGCTTTGGTCGATGGCGTCGATCGTGCTGCTGCTGTCGGAGCTGCTCGGCGGCGAGAGCACCAGCGTAATGGCGGCTGACTGGTACATGAGCGGACACAGCCTCCGGGAGTTCCGGCCCGTGGCGGCTGCTCCGGCGGCGGCGGCGGCGGTGGCCAAGTGCGAGCGGCCGGCGGCCGAGGCAGCGGGGGAGAAGAAGAAGGAGGAGTCGTTCGAGGATCTCGCCGCCGTGTCCCGGATCGCGGTCGACGTGATGTGGCCTTAGAGC ATCCGTCGCCGCCATCTCGCCGGAGAAGAAGAAAAAGAAAATTCTATTCTTGAGTTTTTTTTCTCTATTTTTCTCCTTTTTTTTTGGTTGCCAACGAGGCATGTGTTGTGTACTGTTCTTTTTGAGATCAGATTTGTAAATAT ACGAAGTGATTCTTG                  ]
[+] EMBL OSC10101             [         GAGGTAGCTACAGCCGAATCCCCCAACAGTTGTGTGCAATTTCTTGCTTGCTTGGTTTTCTTTTCCCCCCACTCGGATCGATCTCGTTGTTGTGTGAGGTTTTTTGAGCTTTGGTCGATGGCGTCGATCGTGCTGCTGCTGTCGGAGCTGCTCGGCGGCGAGAGCACCAGCGTAATGGCGGCTGACTGGTACATGAGCGGACACAGCCTCCGGGAGTTCCGGCCCGTGGCGGCTGCTNCGGCGGCGGCGGCGGCGGTGGCCAAGTGCGAGCGGCCGGCGGCNAAGGCAGCGGGGGAGAAGAAGAAGGAGGAGTCGTTCGAGGATCTCGCCGCCGTGTCCCGGATCGCGGTCGACGTGATGTGGCCTTAGAGCAATCCGTNGNCGCCAACTNGCCGGAGAAGAAGAAAAAGAAAATTCTATTCTTGAGTTTTTTTTCTCTATTTTTCTCC TTTTTTTTGG TG CAACGAGGNATGTGTTGTGTAATGTTCTTTTTGAGACAAGATTTGTAAATATAACGAAGGAATTNTTGGAAAAAAAAAAAAAAAAA]




>consensus_4141#0
CCAAAATCGGAGGTAGCTACAGCCGAATCCCCCAACAGTTGTGTGCAATTTCTTGCTTGC
TTGGTTTTCTTTTCCCCCCACTCGGATCGATCTCGTTGTTGTGTGAGGTTTTTTGAGCTT
TGGTCGATGGCGTCGATCGTGCTGCTGCTGTCGGAGCTGCTCGGCGGCGAGAGCACCAGC
GTAATGGCGGCTGACTGGTACATGAGCGGACACAGCCTCCGGGAGTTCCGGCCCGTGGCG
GCTGCTCCGGCGGCGGCGGCGGCGGTGGCCAAGTGCGAGCGGCCGGCGGCCGAGGCAGCG
GGGGAGAAGAAGAAGGAGGAGTCGTTCGAGGATCTCGCCGCCGTGTCCCGGATCGCGGTC
GACGTGATGTGGCCTTAGAGCATCCGTCGCCGCCATCTCGCCGGAGAAGAAGAAAAAGAA
AATTCTATTCTTGAGTTTTTTTTCTCTATTTTTCTCCTTTTTTTTTGGTTGCCAACGAGG
CATGTGTTGTGTACTGTTCTTTTTGAGATCAGATTTGTAAATATACGAAGTGATTCTTGG
AAAAAAAAAAAAAAAAA

consensusID : consensus_4141#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 266
fasta sequence

                              [TTCGAGGATCTCGCCGCCGTGTCCCGGATCGCGGTCGACGTGATGTGGCCTTAGAGCATCCGTCGCCGCCATCTCGCCGGAGAAGAAGAAAAAGAAAATTCTATTCTTGAGTTTTTTTTCTCTGTTTTTCTCCTTTTTTTTGGTTGCCAACGAGGCATGTGTTGTGTACTGTTCTTTTTGAGATCAGATTTGTAAATATACGAAGTGATTCTTGGATGTTTTTCATGTCATTTTGTCAAAAAAAAAAAAAAAAAAAAAACTCGAGA]

[-] EMBL CA758891             [TTCGAGGATCTCGCCGCCGTGTCCCGGATCGCGGTCGACGTGATGTGGCCTTAGAGCATCCGTCGCCGCCATCTCGCCGGAGAAGAAGAAAAAGAAAATTCTATTCTTGAGTTTTTTTTCTCTGTTTTTCTCCTTTTTTTTGGTTGCCAACGAGGCATGTGTTGTGTACTGTTCTTTTTGAGATCAGATTTGTAAATATACGAAGTGATTCTTGGATGTTTTTCATGTCATTTTGTCAAAAAAAAAAAAAAAAAAAAAACTCGAGA]




>consensus_4141#1
TTCGAGGATCTCGCCGCCGTGTCCCGGATCGCGGTCGACGTGATGTGGCCTTAGAGCATC
CGTCGCCGCCATCTCGCCGGAGAAGAAGAAAAAGAAAATTCTATTCTTGAGTTTTTTTTC
TCTGTTTTTCTCCTTTTTTTTGGTTGCCAACGAGGCATGTGTTGTGTACTGTTCTTTTTG
AGATCAGATTTGTAAATATACGAAGTGATTCTTGGATGTTTTTCATGTCATTTTGTCAAA
AAAAAAAAAAAAAAAAAAACTCGAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4141#0      CCAAAATCGGAGGTAGCTACAGCCGAATCCCCCAACAGTTGTGTGCAATTTCTTGCTTGC 60
consensus_4141#1      ------------------------------------------------------------
                                                                                  

consensus_4141#0      TTGGTTTTCTTTTCCCCCCACTCGGATCGATCTCGTTGTTGTGTGAGGTTTTTTGAGCTT 120
consensus_4141#1      ------------------------------------------------------------
                                                                                  

consensus_4141#0      TGGTCGATGGCGTCGATCGTGCTGCTGCTGTCGGAGCTGCTCGGCGGCGAGAGCACCAGC 180
consensus_4141#1      ------------------------------------------------------------
                                                                                  

consensus_4141#0      GTAATGGCGGCTGACTGGTACATGAGCGGACACAGCCTCCGGGAGTTCCGGCCCGTGGCG 240
consensus_4141#1      ------------------------------------------------------------
                                                                                  

consensus_4141#0      GCTGCTCCGGCGGCGGCGGCGGCGGTGGCCAAGTGCGAGCGGCCGGCGGCCGAGGCAGCG 300
consensus_4141#1      ------------------------------------------------------------
                                                                                  

consensus_4141#0      GGGGAGAAGAAGAAGGAGGAGTCGTTCGAGGATCTCGCCGCCGTGTCCCGGATCGCGGTC 360
consensus_4141#1      ------------------------TTCGAGGATCTCGCCGCCGTGTCCCGGATCGCGGTC 36
                                              ************************************

consensus_4141#0      GACGTGATGTGGCCTTAGAGCATCCGTCGCCGCCATCTCGCCGGAGAAGAAGAAAAAGAA 420
consensus_4141#1      GACGTGATGTGGCCTTAGAGCATCCGTCGCCGCCATCTCGCCGGAGAAGAAGAAAAAGAA 96
                      ************************************************************

consensus_4141#0      AATTCTATTCTTGAGTTTTTTTTCTCTATTTTTCTCCTTTTTTTTTGGTTGCCAACGAGG 480
consensus_4141#1      AATTCTATTCTTGAGTTTTTTTTCTCTGTTTTTCTCCTTTTTTTT-GGTTGCCAACGAGG 155
                      *************************** ***************** **************

consensus_4141#0      CATGTGTTGTGTACTGTTCTTTTTGAGATCAGATTTGTAAATATACGAAGTGATTCTTGG 540
consensus_4141#1      CATGTGTTGTGTACTGTTCTTTTTGAGATCAGATTTGTAAATATACGAAGTGATTCTTGG 215
                      ************************************************************

consensus_4141#0      A---------------------AAAAAAAAAAAAAAAA------------- 557
consensus_4141#1      ATGTTTTTCATGTCATTTTGTCAAAAAAAAAAAAAAAAAAAAAACTCGAGA 266
                      *                     ****************