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Oryza sativa
cluster # 4142 cluster # 4142       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4142#0 length = 2072 sequences # 1  
consensus_4142#1 length = 1486 sequences # 1  
consensus_4142#2 length = 792 sequences # 1  

consensusID : consensus_4142#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 2072
fasta sequence
                              [GTAACTGGCGACGCGGTGGTGCCGTGGTGGTGGTGGTGCAGCTTCTCTCCTCTTCTGAATCTTCTCGACTTCTCGTCCTCCCTGTTGCAGAGGCTTCTCCGGCGAGGCCGCGAGGCTTGATTTCAGGTGAGCAAGCGGCTGTGATTTGTGTTTTTCGCCTTTTGCTTTTGAGTTTTCTTCTGCCCTGTTAAATCCCTTCTCTTGATGTGTGTGAGGAGCTGAACTGTAATTCAGTCAGTTCAGATATGTTTGTGATTTATAGGTTTCTGACCCATGCCGTGATGTTTGTTCTGCTTGAGAATACTTGGAAGTTCAGAACCATCCTCAGAATTCAGAAAGGGCTTTGCTCTTTTCGCTAGATGCTTCTTTAAGCGTCGATTCGTCATTTATGCATGCTTTAGCTCTTGTTCTTTTTTTTTTCTCTCTCTTTTATCTCGGATAATTTCACACAATCGCAGATTCTTTGGAGCAAAAAGGAAGAAACATATTTGCTCTTGGATTTGTTTCTTGGAAGTATCGCACAACTAGGATCCAACATCAAAGCAATTTATTTAATATATAACTACATCACTTTTTACTCTGTTTCCTGTTCTGTTCATTTTTGTCCCACTGAACCTGGCTTGAACAAAAAGCTACTATCACTTTTTGCTGAAGTTGTGTTTTGAGCAAACTATTTTCTTTGCTTTCATTAGTGCATAGTTGATGGCATGTCTTGAGCTGGATTCTTCACAATTCCTACTGAATGGGGATGGCAGTGTGATCGGCAGCCCATTTGATATCCAGCTTGAGTGCAATAGCTTCACAGGCTCCAAAGCTGTTCAAGATCATAGCCGATATACTCTTCCTTCACAGTGCACTAATGCCCCTGATCCACCTCCATTACCCGGAACTTCTTATGGCACACACAGAACTTCCAGGAATGCAAAGGCTTGCAGGTGTGTCCCTGAAGAGATCCAGGATTTCTGGGACAGGATGTTCTTCGAAGCGTATCAATATGATCTCCGTGTTTTGACGGAAGATGGCAATGAGATCATGTCACATTCCTGCGTTGTTGGTATTAAATCTCCTGTTCTAAGAGCTATGTTGGAAGAAGCTAAAGTACAAGGTGGCATCCGACACATCCTGATACCTGGTGTACCATCAGAAGCAGTACATGTTTTCATCAGATTTCTTTATTCCTCGCGTTTTGAGCAGTATCAGATGAAGAGGTATGTACTTCATCTGCTTGTACTCTCCCACGTTTTCTCAGTACCATCTCTGAAGAGAGTCTGCATCAACCAACTGGAGACATCTTTGCTTTCTCCTGAGAACGTGGTAGACATACTACAACTTGCTAGACTGTGCGACGCGCCGCGGCTCTCCCTCGTATGCACTCGTATGATCATCGGAGATTTCAAGGCTATCACTCAAACAGAAGGGTGGAGAGTGATGAGACAAGCCAACCCAAGCCTGGAGCAGGAGCTGCTTGAGTCCCTCGTCGAAGAAGATACAAAAAGGCAAGAGAGAGCAAGAAGGCTGGAGGAGAATAAGGTTTATCTGCAGCTACATGAAGCTATGGAAGCTCTTATTCATATATGTCGAGATGGATGCAGGACAATTGGCCCTCGAGATCAAACGCTAAAGAGCAGTCAGGCCGTTTGCAGGTTTCCTGCCTGCAAGGGCATCGAGCTGCTCCTGCGCCATTTCTCGGCGTGCAAAATGCGGGTGCCTGGTGGCTGCGCTAACTGCAAGCGCATATGGCAGCTTCTTGAGCTGCATTCTCGCATGTGCTCTGCACTTGAAACTTGCCATGTTCCCCTCTGTAGGCATTTCAAGGAGAAAATGCAACATCTGAGCAGAAAGGAGGAGGCCAAGTGGAATCTTTTGGTGTCCAAGGTGTTGGAGAGCAAAGCAACAACCAGTTCCATCTCAGAAAGGAGAAAATTTCCATCCCTGAAAACATAGTGCTACGTTCTAGGTTCACAAGTTACAAGAATTATGCACTAACACATAAACTCGATGTAAACTGTGAACATTTGTTGTACTGAAGATTAAAAGGTGTCTCAATTCTAACATGACAATCTGAAGAAAGG]

[+] EMBL AK071112             [GTAACTGGCGACGCGGTGGTGCCGTGGTGGTGGTGGTGCAGCTTCTCTCCTCTTCTGAATCTTCTCGACTTCTCGTCCTCCCTGTTGCAGAGGCTTCTCCGGCGAGGCCGCGAGGCTTGATTTCAGGTGAGCAAGCGGCTGTGATTTGTGTTTTTCGCCTTTTGCTTTTGAGTTTTCTTCTGCCCTGTTAAATCCCTTCTCTTGATGTGTGTGAGGAGCTGAACTGTAATTCAGTCAGTTCAGATATGTTTGTGATTTATAGGTTTCTGACCCATGCCGTGATGTTTGTTCTGCTTGAGAATACTTGGAAGTTCAGAACCATCCTCAGAATTCAGAAAGGGCTTTGCTCTTTTCGCTAGATGCTTCTTTAAGCGTCGATTCGTCATTTATGCATGCTTTAGCTCTTGTTCTTTTTTTTTTCTCTCTCTTTTATCTCGGATAATTTCACACAATCGCAGATTCTTTGGAGCAAAAAGGAAGAAACATATTTGCTCTTGGATTTGTTTCTTGGAAGTATCGCACAACTAGGATCCAACATCAAAGCAATTTATTTAATATATAACTACATCACTTTTTACTCTGTTTCCTGTTCTGTTCATTTTTGTCCCACTGAACCTGGCTTGAACAAAAAGCTACTATCACTTTTTGCTGAAGTTGTGTTTTGAGCAAACTATTTTCTTTGCTTTCATTAGTGCATAGTTGATGGCATGTCTTGAGCTGGATTCTTCACAATTCCTACTGAATGGGGATGGCAGTGTGATCGGCAGCCCATTTGATATCCAGCTTGAGTGCAATAGCTTCACAGGCTCCAAAGCTGTTCAAGATCATAGCCGATATACTCTTCCTTCACAGTGCACTAATGCCCCTGATCCACCTCCATTACCCGGAACTTCTTATGGCACACACAGAACTTCCAGGAATGCAAAGGCTTGCAGGTGTGTCCCTGAAGAGATCCAGGATTTCTGGGACAGGATGTTCTTCGAAGCGTATCAATATGATCTCCGTGTTTTGACGGAAGATGGCAATGAGATCATGTCACATTCCTGCGTTGTTGGTATTAAATCTCCTGTTCTAAGAGCTATGTTGGAAGAAGCTAAAGTACAAGGTGGCATCCGACACATCCTGATACCTGGTGTACCATCAGAAGCAGTACATGTTTTCATCAGATTTCTTTATTCCTCGCGTTTTGAGCAGTATCAGATGAAGAGGTATGTACTTCATCTGCTTGTACTCTCCCACGTTTTCTCAGTACCATCTCTGAAGAGAGTCTGCATCAACCAACTGGAGACATCTTTGCTTTCTCCTGAGAACGTGGTAGACATACTACAACTTGCTAGACTGTGCGACGCGCCGCGGCTCTCCCTCGTATGCACTCGTATGATCATCGGAGATTTCAAGGCTATCACTCAAACAGAAGGGTGGAGAGTGATGAGACAAGCCAACCCAAGCCTGGAGCAGGAGCTGCTTGAGTCCCTCGTCGAAGAAGATACAAAAAGGCAAGAGAGAGCAAGAAGGCTGGAGGAGAATAAGGTTTATCTGCAGCTACATGAAGCTATGGAAGCTCTTATTCATATATGTCGAGATGGATGCAGGACAATTGGCCCTCGAGATCAAACGCTAAAGAGCAGTCAGGCCGTTTGCAGGTTTCCTGCCTGCAAGGGCATCGAGCTGCTCCTGCGCCATTTCTCGGCGTGCAAAATGCGGGTGCCTGGTGGCTGCGCTAACTGCAAGCGCATATGGCAGCTTCTTGAGCTGCATTCTCGCATGTGCTCTGCACTTGAAACTTGCCATGTTCCCCTCTGTAGGCATTTCAAGGAGAAAATGCAACATCTGAGCAGAAAGGAGGAGGCCAAGTGGAATCTTTTGGTGTCCAAGGTGTTGGAGAGCAAAGCAACAACCAGTTCCATCTCAGAAAGGAGAAAATTTCCATCCCTGAAAACATAGTGCTACGTTCTAGGTTCACAAGTTACAAGAATTATGCACTAACACATAAACTCGATGTAAACTGTGAACATTTGTTGTACTGAAGATTAAAAGGTGTCTCAATTCTAACATGACAATCTGAAGAAAGG]


>consensus_4142#0 GTAACTGGCGACGCGGTGGTGCCGTGGTGGTGGTGGTGCAGCTTCTCTCCTCTTCTGAAT CTTCTCGACTTCTCGTCCTCCCTGTTGCAGAGGCTTCTCCGGCGAGGCCGCGAGGCTTGA TTTCAGGTGAGCAAGCGGCTGTGATTTGTGTTTTTCGCCTTTTGCTTTTGAGTTTTCTTC TGCCCTGTTAAATCCCTTCTCTTGATGTGTGTGAGGAGCTGAACTGTAATTCAGTCAGTT CAGATATGTTTGTGATTTATAGGTTTCTGACCCATGCCGTGATGTTTGTTCTGCTTGAGA ATACTTGGAAGTTCAGAACCATCCTCAGAATTCAGAAAGGGCTTTGCTCTTTTCGCTAGA TGCTTCTTTAAGCGTCGATTCGTCATTTATGCATGCTTTAGCTCTTGTTCTTTTTTTTTT CTCTCTCTTTTATCTCGGATAATTTCACACAATCGCAGATTCTTTGGAGCAAAAAGGAAG AAACATATTTGCTCTTGGATTTGTTTCTTGGAAGTATCGCACAACTAGGATCCAACATCA AAGCAATTTATTTAATATATAACTACATCACTTTTTACTCTGTTTCCTGTTCTGTTCATT TTTGTCCCACTGAACCTGGCTTGAACAAAAAGCTACTATCACTTTTTGCTGAAGTTGTGT TTTGAGCAAACTATTTTCTTTGCTTTCATTAGTGCATAGTTGATGGCATGTCTTGAGCTG GATTCTTCACAATTCCTACTGAATGGGGATGGCAGTGTGATCGGCAGCCCATTTGATATC CAGCTTGAGTGCAATAGCTTCACAGGCTCCAAAGCTGTTCAAGATCATAGCCGATATACT CTTCCTTCACAGTGCACTAATGCCCCTGATCCACCTCCATTACCCGGAACTTCTTATGGC ACACACAGAACTTCCAGGAATGCAAAGGCTTGCAGGTGTGTCCCTGAAGAGATCCAGGAT TTCTGGGACAGGATGTTCTTCGAAGCGTATCAATATGATCTCCGTGTTTTGACGGAAGAT GGCAATGAGATCATGTCACATTCCTGCGTTGTTGGTATTAAATCTCCTGTTCTAAGAGCT ATGTTGGAAGAAGCTAAAGTACAAGGTGGCATCCGACACATCCTGATACCTGGTGTACCA TCAGAAGCAGTACATGTTTTCATCAGATTTCTTTATTCCTCGCGTTTTGAGCAGTATCAG ATGAAGAGGTATGTACTTCATCTGCTTGTACTCTCCCACGTTTTCTCAGTACCATCTCTG AAGAGAGTCTGCATCAACCAACTGGAGACATCTTTGCTTTCTCCTGAGAACGTGGTAGAC ATACTACAACTTGCTAGACTGTGCGACGCGCCGCGGCTCTCCCTCGTATGCACTCGTATG ATCATCGGAGATTTCAAGGCTATCACTCAAACAGAAGGGTGGAGAGTGATGAGACAAGCC AACCCAAGCCTGGAGCAGGAGCTGCTTGAGTCCCTCGTCGAAGAAGATACAAAAAGGCAA GAGAGAGCAAGAAGGCTGGAGGAGAATAAGGTTTATCTGCAGCTACATGAAGCTATGGAA GCTCTTATTCATATATGTCGAGATGGATGCAGGACAATTGGCCCTCGAGATCAAACGCTA AAGAGCAGTCAGGCCGTTTGCAGGTTTCCTGCCTGCAAGGGCATCGAGCTGCTCCTGCGC CATTTCTCGGCGTGCAAAATGCGGGTGCCTGGTGGCTGCGCTAACTGCAAGCGCATATGG CAGCTTCTTGAGCTGCATTCTCGCATGTGCTCTGCACTTGAAACTTGCCATGTTCCCCTC TGTAGGCATTTCAAGGAGAAAATGCAACATCTGAGCAGAAAGGAGGAGGCCAAGTGGAAT CTTTTGGTGTCCAAGGTGTTGGAGAGCAAAGCAACAACCAGTTCCATCTCAGAAAGGAGA AAATTTCCATCCCTGAAAACATAGTGCTACGTTCTAGGTTCACAAGTTACAAGAATTATG CACTAACACATAAACTCGATGTAAACTGTGAACATTTGTTGTACTGAAGATTAAAAGGTG TCTCAATTCTAACATGACAATCTGAAGAAAGG



consensusID : consensus_4142#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1486
fasta sequence
                              [AACTGGCGACGCGGTGGTGCCGTGGTGGTGGTGGTGCAGCTTCTCTCCTCTTCTGAATCTTCTCGACTTCTCGTCCTCCCTGTTGCAGAGGCTTCTCCGGCGAGGCCGCGAGGCTTGATTTCAGTGCATAGTTGATGGCATGTCTTGAGCTGGATTCTTCACAATTCCTACTGAATGGGGATGGCAGTGTGATCGGCAGCCCATTTGATATCCAGCTTGAGTGCAATAGCTTCACAGGCTCCAAAGCTGTTCAAGATCATAGCCGATATACTCTTCCTTCACAGTGCACTAATGCCCCTGATCCACCTCCATTACCCGGAACTTCTTATGGCACACACAGAACTTCCAGGAATGCAAAGGCTTGCAGGTGTGTCCCTGAAGAGATCCAGGATTTCTGGGACAGGATGTTCTTCGAAGCGTATCAATATGATCTCCGTGTTTTGACGGAAGATGGCAATGAGATCATGTCACATTCCTGCGTTGTTGGTATTAAATCTCCTGTTCTAAGAGCTATGTTGGAAGAAGCTAAAGTACAAGGTGGCATCCGACACATCCTGATACCTGGTGTATCATCAGAAGCAGTACATGTTTTCATCAGATTTCTTTATTCCTCGCGTTTTGAGCAGTATCAGATGAAGAGGTATGTACTTCATCTGCTTGTACTCTCCCACGTTTTCTCAGTACCATCTCTGAAGAGAGTCTGCATCAACCAACTGGAGACATCTTTGCTTTCTCCTGAGAACGTGGTAGACATACTACAACTTGCTAGACTGTGCGACGCGCCGCGGCTCTCCCTCGTATGCACTCGTATGATCATCGGAGATTTCAAGGCTATCACTCAAACAGAAGGGTGGAGAGTGATGAGACAAGCCAACCCAAGCCTGGAGCAGGAGCTGCTTGAGTCCCTCGTCGAAGAAGATACAAAAAGGCAAGAGAGAGCAAGAAGGCTGGAGGAGAATAAGGTTTATCTGCAGCTACATGAAGCTATGGAAGCTCTTATTCATATATGTCGAGATGGATGCAGGACAATTGGCCCTCGAGATCAAACGCTAAAGAGCAGTCAGGCCGTTTGCAGGTTTCCTGCCTGCAAGGGCATCGAGCTGCTCCTGCGCCATTTCTCGGCGTGCAAAATGCGGGTGCCTGGTGGCTGCGCTAACTGCAAGCGCATATGGCAGCTTCTTGAGCTGCATTCTCGCATGTGCTCTGCACTTGAAACTTGCCATGTTCCCCTCTGTAGGCATTTCAAGGAGAAAATGCAACATCTGAGCAGAAAGGAGGAGGCCAAGTGGAATCTTTTGGTGTCCAAGGTGTTGGAGAGCAAAGCAACAACCAGTTCCATCTCAGAAAGGAGAAAATTTCCATCCCTGAAAACATAGTGCTACGTTCTAGGTTCACAAGTTACAAGAATTATGCACTAACACATAAACTCGATGTAAACTGTGAACATTTGTTGTACTGAAGATTAAAAGGTGTCTCAATTCTAACA]

[+] EMBL AK061917             [AACTGGCGACGCGGTGGTGCCGTGGTGGTGGTGGTGCAGCTTCTCTCCTCTTCTGAATCTTCTCGACTTCTCGTCCTCCCTGTTGCAGAGGCTTCTCCGGCGAGGCCGCGAGGCTTGATTTCAGTGCATAGTTGATGGCATGTCTTGAGCTGGATTCTTCACAATTCCTACTGAATGGGGATGGCAGTGTGATCGGCAGCCCATTTGATATCCAGCTTGAGTGCAATAGCTTCACAGGCTCCAAAGCTGTTCAAGATCATAGCCGATATACTCTTCCTTCACAGTGCACTAATGCCCCTGATCCACCTCCATTACCCGGAACTTCTTATGGCACACACAGAACTTCCAGGAATGCAAAGGCTTGCAGGTGTGTCCCTGAAGAGATCCAGGATTTCTGGGACAGGATGTTCTTCGAAGCGTATCAATATGATCTCCGTGTTTTGACGGAAGATGGCAATGAGATCATGTCACATTCCTGCGTTGTTGGTATTAAATCTCCTGTTCTAAGAGCTATGTTGGAAGAAGCTAAAGTACAAGGTGGCATCCGACACATCCTGATACCTGGTGTATCATCAGAAGCAGTACATGTTTTCATCAGATTTCTTTATTCCTCGCGTTTTGAGCAGTATCAGATGAAGAGGTATGTACTTCATCTGCTTGTACTCTCCCACGTTTTCTCAGTACCATCTCTGAAGAGAGTCTGCATCAACCAACTGGAGACATCTTTGCTTTCTCCTGAGAACGTGGTAGACATACTACAACTTGCTAGACTGTGCGACGCGCCGCGGCTCTCCCTCGTATGCACTCGTATGATCATCGGAGATTTCAAGGCTATCACTCAAACAGAAGGGTGGAGAGTGATGAGACAAGCCAACCCAAGCCTGGAGCAGGAGCTGCTTGAGTCCCTCGTCGAAGAAGATACAAAAAGGCAAGAGAGAGCAAGAAGGCTGGAGGAGAATAAGGTTTATCTGCAGCTACATGAAGCTATGGAAGCTCTTATTCATATATGTCGAGATGGATGCAGGACAATTGGCCCTCGAGATCAAACGCTAAAGAGCAGTCAGGCCGTTTGCAGGTTTCCTGCCTGCAAGGGCATCGAGCTGCTCCTGCGCCATTTCTCGGCGTGCAAAATGCGGGTGCCTGGTGGCTGCGCTAACTGCAAGCGCATATGGCAGCTTCTTGAGCTGCATTCTCGCATGTGCTCTGCACTTGAAACTTGCCATGTTCCCCTCTGTAGGCATTTCAAGGAGAAAATGCAACATCTGAGCAGAAAGGAGGAGGCCAAGTGGAATCTTTTGGTGTCCAAGGTGTTGGAGAGCAAAGCAACAACCAGTTCCATCTCAGAAAGGAGAAAATTTCCATCCCTGAAAACATAGTGCTACGTTCTAGGTTCACAAGTTACAAGAATTATGCACTAACACATAAACTCGATGTAAACTGTGAACATTTGTTGTACTGAAGATTAAAAGGTGTCTCAATTCTAACA]


>consensus_4142#1 AACTGGCGACGCGGTGGTGCCGTGGTGGTGGTGGTGCAGCTTCTCTCCTCTTCTGAATCT TCTCGACTTCTCGTCCTCCCTGTTGCAGAGGCTTCTCCGGCGAGGCCGCGAGGCTTGATT TCAGTGCATAGTTGATGGCATGTCTTGAGCTGGATTCTTCACAATTCCTACTGAATGGGG ATGGCAGTGTGATCGGCAGCCCATTTGATATCCAGCTTGAGTGCAATAGCTTCACAGGCT CCAAAGCTGTTCAAGATCATAGCCGATATACTCTTCCTTCACAGTGCACTAATGCCCCTG ATCCACCTCCATTACCCGGAACTTCTTATGGCACACACAGAACTTCCAGGAATGCAAAGG CTTGCAGGTGTGTCCCTGAAGAGATCCAGGATTTCTGGGACAGGATGTTCTTCGAAGCGT ATCAATATGATCTCCGTGTTTTGACGGAAGATGGCAATGAGATCATGTCACATTCCTGCG TTGTTGGTATTAAATCTCCTGTTCTAAGAGCTATGTTGGAAGAAGCTAAAGTACAAGGTG GCATCCGACACATCCTGATACCTGGTGTATCATCAGAAGCAGTACATGTTTTCATCAGAT TTCTTTATTCCTCGCGTTTTGAGCAGTATCAGATGAAGAGGTATGTACTTCATCTGCTTG TACTCTCCCACGTTTTCTCAGTACCATCTCTGAAGAGAGTCTGCATCAACCAACTGGAGA CATCTTTGCTTTCTCCTGAGAACGTGGTAGACATACTACAACTTGCTAGACTGTGCGACG CGCCGCGGCTCTCCCTCGTATGCACTCGTATGATCATCGGAGATTTCAAGGCTATCACTC AAACAGAAGGGTGGAGAGTGATGAGACAAGCCAACCCAAGCCTGGAGCAGGAGCTGCTTG AGTCCCTCGTCGAAGAAGATACAAAAAGGCAAGAGAGAGCAAGAAGGCTGGAGGAGAATA AGGTTTATCTGCAGCTACATGAAGCTATGGAAGCTCTTATTCATATATGTCGAGATGGAT GCAGGACAATTGGCCCTCGAGATCAAACGCTAAAGAGCAGTCAGGCCGTTTGCAGGTTTC CTGCCTGCAAGGGCATCGAGCTGCTCCTGCGCCATTTCTCGGCGTGCAAAATGCGGGTGC CTGGTGGCTGCGCTAACTGCAAGCGCATATGGCAGCTTCTTGAGCTGCATTCTCGCATGT GCTCTGCACTTGAAACTTGCCATGTTCCCCTCTGTAGGCATTTCAAGGAGAAAATGCAAC ATCTGAGCAGAAAGGAGGAGGCCAAGTGGAATCTTTTGGTGTCCAAGGTGTTGGAGAGCA AAGCAACAACCAGTTCCATCTCAGAAAGGAGAAAATTTCCATCCCTGAAAACATAGTGCT ACGTTCTAGGTTCACAAGTTACAAGAATTATGCACTAACACATAAACTCGATGTAAACTG TGAACATTTGTTGTACTGAAGATTAAAAGGTGTCTCAATTCTAACA



consensusID : consensus_4142#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 792
fasta sequence
                              [CTTGAGCTGGATTCTTCACAATTCCTACTGAATGGGGATGGCAGTGTGATCGGCAGCCCATTTGATATCCAGCTTGAGTGCAATAGCTTCACAGGCTCCAAAGCTGTTCAAGATCATAGCCGATATACTCTTCCTTCACAGTGCACTAATGCCCCTGATCCACCTCCATTACCCGGAACTTCTTATGGCACACACAGAACTTCCAGGAATGCAAAGGCTTGCAGGTGTGTCCCTGAAGAGATCCAGGATTTCTGGGACAGGATGTTCTTCGAAGCGTATCAATATGATCTCCGTGTTTTGACGGAAGATGGCAATGAGATCATGTCACATTCCTGCGTTGTTGGTATTAAATCTCCTGTTCTAAGAGCTATGTTGGAAGAAGCTAAAGTACAAGGTGGCATCCGACACATCCTGATACCTGGTGTACCATCAGAAGCAGTACATGTTTTCATCAGATTTCTTTATTCCTCGCGTTTTGAGCAGTATCAGATGAAGAGGTATGTACTTCATCTGCTTGTACTCTCCCACGTTTTCTCAGTACCATCTCTGAAGAGAGTCTGCATCAACCAACTGGAGACATCTTTGCTTTCTCCTGAGAACGTGGTAGACATACTACAACTTGCTAGACTGTGCGACGCGCCGCGGCTCTCCCTCGTATGCACTCGTATGATCATCGGAGATTTCAAGGCTATCACTCAAACAGAAGGGTGGAGAGTGATGAGACAAGCCAACCCAAGCCTGGAGCAGGAGCTGCTTGAGTCCCTCGTCGAAGAAGATACAGTGAGTTTATCT]

[+] EMBL AY224504             [CTTGAGCTGGATTCTTCACAATTCCTACTGAATGGGGATGGCAGTGTGATCGGCAGCCCATTTGATATCCAGCTTGAGTGCAATAGCTTCACAGGCTCCAAAGCTGTTCAAGATCATAGCCGATATACTCTTCCTTCACAGTGCACTAATGCCCCTGATCCACCTCCATTACCCGGAACTTCTTATGGCACACACAGAACTTCCAGGAATGCAAAGGCTTGCAGGTGTGTCCCTGAAGAGATCCAGGATTTCTGGGACAGGATGTTCTTCGAAGCGTATCAATATGATCTCCGTGTTTTGACGGAAGATGGCAATGAGATCATGTCACATTCCTGCGTTGTTGGTATTAAATCTCCTGTTCTAAGAGCTATGTTGGAAGAAGCTAAAGTACAAGGTGGCATCCGACACATCCTGATACCTGGTGTACCATCAGAAGCAGTACATGTTTTCATCAGATTTCTTTATTCCTCGCGTTTTGAGCAGTATCAGATGAAGAGGTATGTACTTCATCTGCTTGTACTCTCCCACGTTTTCTCAGTACCATCTCTGAAGAGAGTCTGCATCAACCAACTGGAGACATCTTTGCTTTCTCCTGAGAACGTGGTAGACATACTACAACTTGCTAGACTGTGCGACGCGCCGCGGCTCTCCCTCGTATGCACTCGTATGATCATCGGAGATTTCAAGGCTATCACTCAAACAGAAGGGTGGAGAGTGATGAGACAAGCCAACCCAAGCCTGGAGCAGGAGCTGCTTGAGTCCCTCGTCGAAGAAGATACAGTGAGTTTATCT]


>consensus_4142#2 CTTGAGCTGGATTCTTCACAATTCCTACTGAATGGGGATGGCAGTGTGATCGGCAGCCCA TTTGATATCCAGCTTGAGTGCAATAGCTTCACAGGCTCCAAAGCTGTTCAAGATCATAGC CGATATACTCTTCCTTCACAGTGCACTAATGCCCCTGATCCACCTCCATTACCCGGAACT TCTTATGGCACACACAGAACTTCCAGGAATGCAAAGGCTTGCAGGTGTGTCCCTGAAGAG ATCCAGGATTTCTGGGACAGGATGTTCTTCGAAGCGTATCAATATGATCTCCGTGTTTTG ACGGAAGATGGCAATGAGATCATGTCACATTCCTGCGTTGTTGGTATTAAATCTCCTGTT CTAAGAGCTATGTTGGAAGAAGCTAAAGTACAAGGTGGCATCCGACACATCCTGATACCT GGTGTACCATCAGAAGCAGTACATGTTTTCATCAGATTTCTTTATTCCTCGCGTTTTGAG CAGTATCAGATGAAGAGGTATGTACTTCATCTGCTTGTACTCTCCCACGTTTTCTCAGTA CCATCTCTGAAGAGAGTCTGCATCAACCAACTGGAGACATCTTTGCTTTCTCCTGAGAAC GTGGTAGACATACTACAACTTGCTAGACTGTGCGACGCGCCGCGGCTCTCCCTCGTATGC ACTCGTATGATCATCGGAGATTTCAAGGCTATCACTCAAACAGAAGGGTGGAGAGTGATG AGACAAGCCAACCCAAGCCTGGAGCAGGAGCTGCTTGAGTCCCTCGTCGAAGAAGATACA GTGAGTTTATCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4142#0      GTAACTGGCGACGCGGTGGTGCCGTGGTGGTGGTGGTGCAGCTTCTCTCCTCTTCTGAAT 60
consensus_4142#2      ------------------------------------------------------------
consensus_4142#1      ------------------------------------------------------------
                                                                                  

consensus_4142#0      CTTCTCGACTTCTCGTCCTCCCTGTTGCAGAGGCTTCTCCGGCGAGGCCGCGAGGCTTGA 120
consensus_4142#2      ------------------------------------------------------------
consensus_4142#1      ------------------------------------------------------------
                                                                                  

consensus_4142#0      TTTCAGGTGAGCAAGCGGCTGTGATTTGTGTTTTTCGCCTTTTGCTTTTGAGTTTTCTTC 180
consensus_4142#2      ------------------------------------------------------------
consensus_4142#1      ------------------------------------------------------------
                                                                                  

consensus_4142#0      TGCCCTGTTAAATCCCTTCTCTTGATGTGTGTGAGGAGCTGAACTGTAATTCAGTCAGTT 240
consensus_4142#2      ------------------------------------------------------------
consensus_4142#1      ------------------------------------------------------------
                                                                                  

consensus_4142#0      CAGATATGTTTGTGATTTATAGGTTTCTGACCCATGCCGTGATGTTTGTTCTGCTTGAGA 300
consensus_4142#2      ------------------------------------------------------------
consensus_4142#1      ------------------------------------------------------------
                                                                                  

consensus_4142#0      ATACTTGGAAGTTCAGAACCATCCTCAGAATTCAGAAAGGGCTTTGCTCTTTTCGCTAGA 360
consensus_4142#2      ------------------------------------------------------------
consensus_4142#1      ------------------------------------------------------------
                                                                                  

consensus_4142#0      TGCTTCTTTAAGCGTCGATTCGTCATTTATGCATGCTTTAGCTCTTGTTCTTTTTTTTTT 420
consensus_4142#2      ------------------------------------------------------------
consensus_4142#1      ------------------------------------------------------------
                                                                                  

consensus_4142#0      CTCTCTCTTTTATCTCGGATAATTTCACACAATCGCAGATTCTTTGGAGCAAAAAGGAAG 480
consensus_4142#2      ------------------------------------------------------------
consensus_4142#1      ------------------------------------------------------------
                                                                                  

consensus_4142#0      AAACATATTTGCTCTTGGATTTGTTTCTTGGAAGTATCGCACAACTAGGATCCAACATCA 540
consensus_4142#2      ------------------------------------------------------------
consensus_4142#1      ------------------------------------------------------------
                                                                                  

consensus_4142#0      AAGCAATTTATTTAATATATAACTACATCACTTTTTACTCTGTTTCCTGTTCTGTT-CAT 599
consensus_4142#2      ------------------------------------------------------------
consensus_4142#1      ----------------AACTGGCGACGCGG--TGGTGCCGTGGTGGTGGTGGTGCAGCTT 42
                                                                                  

consensus_4142#0      TTTTGTCCCACTGAACCTGGCTTGAACAAAAAGCTACTATCACTTTTTGCTGAAGTTGTG 659
consensus_4142#2      ------------------------------------------------------------
consensus_4142#1      CTCTCCTCTTCTGAATCTT-CTCGA--------CTTCTCGTCCTCCCTGTTGCAGAGGCT 93
                                                                                  

consensus_4142#0      TTTTGAGCAAA-CTATTTTCTTTGCTTTCATTAGTGCATAGTTGATGGCATGTCTTGAGC 718
consensus_4142#2      -----------------------------------------------------CTTGAGC 7
consensus_4142#1      TCTCCGGCGAGGCCGCGAGGCTTGATTTCA---GTGCATAGTTGATGGCATGTCTTGAGC 150
                                                                           *******

consensus_4142#0      TGGATTCTTCACAATTCCTACTGAATGGGGATGGCAGTGTGATCGGCAGCCCATTTGATA 778
consensus_4142#2      TGGATTCTTCACAATTCCTACTGAATGGGGATGGCAGTGTGATCGGCAGCCCATTTGATA 67
consensus_4142#1      TGGATTCTTCACAATTCCTACTGAATGGGGATGGCAGTGTGATCGGCAGCCCATTTGATA 210
                      ************************************************************

consensus_4142#0      TCCAGCTTGAGTGCAATAGCTTCACAGGCTCCAAAGCTGTTCAAGATCATAGCCGATATA 838
consensus_4142#2      TCCAGCTTGAGTGCAATAGCTTCACAGGCTCCAAAGCTGTTCAAGATCATAGCCGATATA 127
consensus_4142#1      TCCAGCTTGAGTGCAATAGCTTCACAGGCTCCAAAGCTGTTCAAGATCATAGCCGATATA 270
                      ************************************************************

consensus_4142#0      CTCTTCCTTCACAGTGCACTAATGCCCCTGATCCACCTCCATTACCCGGAACTTCTTATG 898
consensus_4142#2      CTCTTCCTTCACAGTGCACTAATGCCCCTGATCCACCTCCATTACCCGGAACTTCTTATG 187
consensus_4142#1      CTCTTCCTTCACAGTGCACTAATGCCCCTGATCCACCTCCATTACCCGGAACTTCTTATG 330
                      ************************************************************

consensus_4142#0      GCACACACAGAACTTCCAGGAATGCAAAGGCTTGCAGGTGTGTCCCTGAAGAGATCCAGG 958
consensus_4142#2      GCACACACAGAACTTCCAGGAATGCAAAGGCTTGCAGGTGTGTCCCTGAAGAGATCCAGG 247
consensus_4142#1      GCACACACAGAACTTCCAGGAATGCAAAGGCTTGCAGGTGTGTCCCTGAAGAGATCCAGG 390
                      ************************************************************

consensus_4142#0      ATTTCTGGGACAGGATGTTCTTCGAAGCGTATCAATATGATCTCCGTGTTTTGACGGAAG 1018
consensus_4142#2      ATTTCTGGGACAGGATGTTCTTCGAAGCGTATCAATATGATCTCCGTGTTTTGACGGAAG 307
consensus_4142#1      ATTTCTGGGACAGGATGTTCTTCGAAGCGTATCAATATGATCTCCGTGTTTTGACGGAAG 450
                      ************************************************************

consensus_4142#0      ATGGCAATGAGATCATGTCACATTCCTGCGTTGTTGGTATTAAATCTCCTGTTCTAAGAG 1078
consensus_4142#2      ATGGCAATGAGATCATGTCACATTCCTGCGTTGTTGGTATTAAATCTCCTGTTCTAAGAG 367
consensus_4142#1      ATGGCAATGAGATCATGTCACATTCCTGCGTTGTTGGTATTAAATCTCCTGTTCTAAGAG 510
                      ************************************************************

consensus_4142#0      CTATGTTGGAAGAAGCTAAAGTACAAGGTGGCATCCGACACATCCTGATACCTGGTGTAC 1138
consensus_4142#2      CTATGTTGGAAGAAGCTAAAGTACAAGGTGGCATCCGACACATCCTGATACCTGGTGTAC 427
consensus_4142#1      CTATGTTGGAAGAAGCTAAAGTACAAGGTGGCATCCGACACATCCTGATACCTGGTGTAT 570
                      *********************************************************** 

consensus_4142#0      CATCAGAAGCAGTACATGTTTTCATCAGATTTCTTTATTCCTCGCGTTTTGAGCAGTATC 1198
consensus_4142#2      CATCAGAAGCAGTACATGTTTTCATCAGATTTCTTTATTCCTCGCGTTTTGAGCAGTATC 487
consensus_4142#1      CATCAGAAGCAGTACATGTTTTCATCAGATTTCTTTATTCCTCGCGTTTTGAGCAGTATC 630
                      ************************************************************

consensus_4142#0      AGATGAAGAGGTATGTACTTCATCTGCTTGTACTCTCCCACGTTTTCTCAGTACCATCTC 1258
consensus_4142#2      AGATGAAGAGGTATGTACTTCATCTGCTTGTACTCTCCCACGTTTTCTCAGTACCATCTC 547
consensus_4142#1      AGATGAAGAGGTATGTACTTCATCTGCTTGTACTCTCCCACGTTTTCTCAGTACCATCTC 690
                      ************************************************************

consensus_4142#0      TGAAGAGAGTCTGCATCAACCAACTGGAGACATCTTTGCTTTCTCCTGAGAACGTGGTAG 1318
consensus_4142#2      TGAAGAGAGTCTGCATCAACCAACTGGAGACATCTTTGCTTTCTCCTGAGAACGTGGTAG 607
consensus_4142#1      TGAAGAGAGTCTGCATCAACCAACTGGAGACATCTTTGCTTTCTCCTGAGAACGTGGTAG 750
                      ************************************************************

consensus_4142#0      ACATACTACAACTTGCTAGACTGTGCGACGCGCCGCGGCTCTCCCTCGTATGCACTCGTA 1378
consensus_4142#2      ACATACTACAACTTGCTAGACTGTGCGACGCGCCGCGGCTCTCCCTCGTATGCACTCGTA 667
consensus_4142#1      ACATACTACAACTTGCTAGACTGTGCGACGCGCCGCGGCTCTCCCTCGTATGCACTCGTA 810
                      ************************************************************

consensus_4142#0      TGATCATCGGAGATTTCAAGGCTATCACTCAAACAGAAGGGTGGAGAGTGATGAGACAAG 1438
consensus_4142#2      TGATCATCGGAGATTTCAAGGCTATCACTCAAACAGAAGGGTGGAGAGTGATGAGACAAG 727
consensus_4142#1      TGATCATCGGAGATTTCAAGGCTATCACTCAAACAGAAGGGTGGAGAGTGATGAGACAAG 870
                      ************************************************************

consensus_4142#0      CCAACCCAAGCCTGGAGCAGGAGCTGCTTGAGTCCCTCGTCGAAGAAGATACAAAAAGGC 1498
consensus_4142#2      CCAACCCAAGCCTGGAGCAGGAGCTGCTTGAGTCCCTCGTCGAAGAAGATACAGTGAGTT 787
consensus_4142#1      CCAACCCAAGCCTGGAGCAGGAGCTGCTTGAGTCCCTCGTCGAAGAAGATACAAAAAGGC 930
                      *****************************************************   **  

consensus_4142#0      AAGAGAGAGCAAGAAGGCTGGAGGAGAATAAGGTTTATCTGCAGCTACATGAAGCTATGG 1558
consensus_4142#2      TATCT------------------------------------------------------- 792
consensus_4142#1      AAGAGAGAGCAAGAAGGCTGGAGGAGAATAAGGTTTATCTGCAGCTACATGAAGCTATGG 990
                       *                                                          

consensus_4142#0      AAGCTCTTATTCATATATGTCGAGATGGATGCAGGACAATTGGCCCTCGAGATCAAACGC 1618
consensus_4142#2      ------------------------------------------------------------
consensus_4142#1      AAGCTCTTATTCATATATGTCGAGATGGATGCAGGACAATTGGCCCTCGAGATCAAACGC 1050
                                                                                  

consensus_4142#0      TAAAGAGCAGTCAGGCCGTTTGCAGGTTTCCTGCCTGCAAGGGCATCGAGCTGCTCCTGC 1678
consensus_4142#2      ------------------------------------------------------------
consensus_4142#1      TAAAGAGCAGTCAGGCCGTTTGCAGGTTTCCTGCCTGCAAGGGCATCGAGCTGCTCCTGC 1110
                                                                                  

consensus_4142#0      GCCATTTCTCGGCGTGCAAAATGCGGGTGCCTGGTGGCTGCGCTAACTGCAAGCGCATAT 1738
consensus_4142#2      ------------------------------------------------------------
consensus_4142#1      GCCATTTCTCGGCGTGCAAAATGCGGGTGCCTGGTGGCTGCGCTAACTGCAAGCGCATAT 1170
                                                                                  

consensus_4142#0      GGCAGCTTCTTGAGCTGCATTCTCGCATGTGCTCTGCACTTGAAACTTGCCATGTTCCCC 1798
consensus_4142#2      ------------------------------------------------------------
consensus_4142#1      GGCAGCTTCTTGAGCTGCATTCTCGCATGTGCTCTGCACTTGAAACTTGCCATGTTCCCC 1230
                                                                                  

consensus_4142#0      TCTGTAGGCATTTCAAGGAGAAAATGCAACATCTGAGCAGAAAGGAGGAGGCCAAGTGGA 1858
consensus_4142#2      ------------------------------------------------------------
consensus_4142#1      TCTGTAGGCATTTCAAGGAGAAAATGCAACATCTGAGCAGAAAGGAGGAGGCCAAGTGGA 1290
                                                                                  

consensus_4142#0      ATCTTTTGGTGTCCAAGGTGTTGGAGAGCAAAGCAACAACCAGTTCCATCTCAGAAAGGA 1918
consensus_4142#2      ------------------------------------------------------------
consensus_4142#1      ATCTTTTGGTGTCCAAGGTGTTGGAGAGCAAAGCAACAACCAGTTCCATCTCAGAAAGGA 1350
                                                                                  

consensus_4142#0      GAAAATTTCCATCCCTGAAAACATAGTGCTACGTTCTAGGTTCACAAGTTACAAGAATTA 1978
consensus_4142#2      ------------------------------------------------------------
consensus_4142#1      GAAAATTTCCATCCCTGAAAACATAGTGCTACGTTCTAGGTTCACAAGTTACAAGAATTA 1410
                                                                                  

consensus_4142#0      TGCACTAACACATAAACTCGATGTAAACTGTGAACATTTGTTGTACTGAAGATTAAAAGG 2038
consensus_4142#2      ------------------------------------------------------------
consensus_4142#1      TGCACTAACACATAAACTCGATGTAAACTGTGAACATTTGTTGTACTGAAGATTAAAAGG 1470
                                                                                  

consensus_4142#0      TGTCTCAATTCTAACATGACAATCTGAAGAAAGG 2072
consensus_4142#2      ----------------------------------
consensus_4142#1      TGTCTCAATTCTAACA------------------ 1486
                                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)