These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4151#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 878 fasta sequence [GTTAGCTATACTATTAAACTTGCTCTTAGAGCGAGTACAATAGCAGTCTACAAGTAAGTTGTAATCACATATAGAGGAGATAAGAGATAGAAGGAAAGCGGTTGTAGCCCGCTGCAGCAAGGACTCCAATATATTGTGTGTGTATAAGATGTGAGACTATACATTAATGCTGTAGTATATGCTTATAGGTAACTATTGTATGGATGAGCTATTAGATCGACTAGGCCATCGTCGTCGCCATCCTCCTCTTCCGCTGCCAAGCTCATCGCCCGCCTCCTCTCCGCGCTATCGAGCTCGTCGCCTGCCTCCTCTCCGCGACGCCGAGCTTGTCGGCCCGTCTCCCAGATCTACACCGGAGAGGGAGAGGCCGCGCCGGTGTGGAGAGGAAAAGGGGGAAGGCCACAACGGGGAGAGGAGCGGCGACGTCGTCCTCCTCTCCGCCGCCGCTCTTCCTCGCCCCTGGAGAGAGGAACGTCGAACACCGCCGTGGCTTCCTGCCCACTGCCACTCCGGTCGCCGCTCACTTCCTCCGCCTCAGCGCCGCTACCTCGCTTCCTTCCGCCGGTAGGGAACGGATAAAGGAGAGAGAGAGGAGAGATGGAAAGTGAGGATAGAAAAAAAGACTGGTGGGACCCACTCAAAGGAATATGCACCGTGGAGCATGTATCTAACAATGTTCTTGGGTGTTCTTGAGCTAAGTTGGCACACGAGGCTCCACAAATATTTGTGACCCACTGCTAATACCCTAAGAGAGGAGAGATAAGGAAAACGGGTTACAAATTTATAGCCAGCCGCAGCACGTACTCCAAAACACTATGTGTATGAGAGGTGAGATCATATATTAATCGTGTAATATATGTTTATAAGTAACTATGGTA] [-] EMBL AK121267 [GTTAGCTATACTATTAAACTTGCTCTTAGAGCGAGTACAATAGCAGTCTACAAGTAAGTTGTAATCACATATAGAGGAGATAAGAGATAGAAGGAAAGCGGTTGTAGCCCGCTGCAGCAAGGACTCCAATATATTGTGTGTGTATAAGATGTGAGACTATACATTAATGCTGTAGTATATGCTTATAGGTAACTATTGTATGGATGAGCTATTAGATCGACTAGGCCATCGTCGTCGCCATCCTCCTCTTCCGCTGCCAAGCTCATCGCCCGCCTCCTCTCCGCGCTATCGAGCTCGTCGCCTGCCTCCTCTCCGCGACGCCGAGCTTGTCGGCCCGTCTCCCAGATCTACACCGGAGAGGGAGAGGCCGCGCCGGTGTGGAGAGGAAAAGGGGGAAGGCCACAACGGGGAGAGGAGCGGCGACGTCGTCCTCCTCTCCGCCGCCGCTCTTCCTCGCCCCTGGAGAGAGGAACGTCGAACACCGCCGTGGCTTCCTGCCCACTGCCACTCCGGTCGCCGCTCACTTCCTCCGCCTCA ] [+] EMBL AK066447 [ CTGCCAAGCTCATCGCCCGCCTCCTCTCCGCGCTATCGAGCTCGTCGCCTGCCTCCTCTCCGCGACGCCGAGCTTGTCGGCCCGTCTCCCAGATCTACACCGGAGAGGGAGAGGCCGCGCCGGTGTGGAGAGGAAAAGGGGGAAGGCCACAACGGGGAGAGGAGCGGCGACGTCGTCCTCCTCTCCGCCGCCGCTCTTCCTCGCCCCTGGAGAGAGGAACGTCGAACACCGCCGTGGCTTCCTGCCCACTGCCACTCCGGTCGCCGCTCACTTCCTCCGCCTCAGCGCCGCTACCTCGCTTCCTTCCGCCGGTAGGGAACGGATAAAGGAGAGAGAGAGGAGAGATGGAAAGTGAGGATAGAAAAAAAGACTGGTGGGACCCACTCAAAGGAATATGCACCGTGGAGCATGTATCTAACAATGTTCTTGGGTGTTCTTGAGCTAAGTTGGCACACGAGGCTCCACAAATATTTGTGACCCACTGCTAATACCCTAAGAGAGGAGAGATAAGGAAAACGGGTTACAAATTTATAGCCAGCCGCAGCACGTACTCCAAAACACTATGTGTATGAGAGGTGAGATCATATATTAATCGTGTAATATATGTTTATAAGTAACTATGGTA] consensusID : consensus_4151#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence [CGTGGACGTGGCGAAGGTGCTCGCCCCCTCGCCCCGAGCCCGCGTGCCCGGCGCCGCCCCTCGCGCCTTCGTGCTTGGGCCGCGCGCGACTGGGGCCTCATCCCATCCCCCCACGGCGGGCGGCGTGCTGCGGTGGGCACGCGCAGCCTCCGGCCCAACCCCCCCCACCGTCGGGTGTCGGGGCGGCCGCGTCGCGCCCAGCGGGCCTACCGCGCGGCTTCCTCANACACCCGCCCCTCAGCGCGCTGCCAAGCTCGTGGCCGGCGTCCTCTCCGCGCTATCTAGCTGGACGCCACCTCCTCTGAGCAGCACCAAGCTGGTCGGNCCGTCTGGCAGATCTACACCGGAGAGGGAGAGGCCGCGCCGGTGTGGAGAGGAAAAGGGGGAAGGCCACAACGGGGAGAGGAGCGACGACGTCGTCCTCCTCTCCGCCGCCGCTCTTCCTCGCCCCTGGAGAGAGGAACGTCGAACACCGCCGTGGCTTCCTGCCCACTGCCACTCCGGTCGCCGCTCACTTCCTCCGCCTCAGCGCCGCTACCTCGCTTCCTTCCGCCGGTAGGGAACGGATAAAGGAGAGAGAGAGGAGAGATGGAAAGTGAGGATA] [-] EMBL CA754573 [CGTGGACGTGGCGAAGGTGCTCGCCCCCTCGCCCCGAGCCCGCGTGCCCGGCGCCGCCCCTCGCGCCTTCGTGCTTGGGCCGCGCGCGACTGGGGCCTCATCCCATCCCCCCACGGCGGGCGGCGTGCTGCGGTGGGCACGCGCAGCCTCCGGCCCAACCCCCCCCACCGTCGGGTGTCGGGGCGGCCGCGTCGCGCCCAGCGGGCCTACCGCGCGGCTTCCTCANACACCCGCCCCTCAGCGCGCTGCCAAGCTCGTGGCCGGCGTCCTCTCCGCGCTATCTAGCTGGACGCCACCTCCTCTGAGCAGCACCAAGCTGGTCGGNCCGTCTGGCAGATCTACACCGGAGAGGGAGAGGCCGCGCCGGTGTGGAGAGGAAAAGGGGGAAGGCCACAACGGGGAGAGGAGCGACGACGTCGTCCTCCTCTCCGCCGCCGCTCTTCCTCGCCCCTGGAGAGAGGAACGTCGAACACCGCCGTGGCTTCCTGCCCACTGCCACTCCGGTCGCCGCTCACTTCCTCCGCCTCAGCGCCGCTACCTCGCTTCCTTCCGCCGGTAGGGAACGGATAAAGGAGAGAGAGAGGAGAGATGGAAAGTGAGGATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4151#0 -GTTAGCTATACTATTAAACTTGCTCTTAGAGCGAGTACAATAGCAGTCTACAA-GTAAG 58 consensus_4151#1 CGTGGACGTGGCGAAGGTGCTCGCCCCCTCGCCCCGAGCCCGCGTGCCCGGCGCCGCCCC 60 ** * * * ** ** * * * * * * * * consensus_4151#0 TTGTAATCACATATAGAGGAGATAAGAGATAGAAGGAAAGCGGTTGTAGCCCGCTGCAGC 118 consensus_4151#1 TCGCGCCTTCGTGCTTGGGCCGCGCGCGACTGGGGCC---TCATCCCATCCCCCCACGGC 117 * * * * ** * ** * * * * *** * * ** consensus_4151#0 AAGGACTCCAATATATTGTGTGTGTATAAGATGTGAGACTATACATTAATGCTGTAGTAT 178 consensus_4151#1 GGGCGGCGTGCTGCGGTGGGCACGCGCAGCCTCCG-GCCCAACCCCCCCCACCGTCGGGT 176 * * ** * * * * * * * * * * ** * * consensus_4151#0 ATGCTTATAGGTAACTATTGTATGGATGAGCTATTAGATCGACTAGGCCATCGTCGTCGC 238 consensus_4151#1 GTCGGGGCGGCCGCGTCGCGCCCAGCGGGCCTACC------GCGCGGCTTCCTCANACAC 230 * * * * * * *** * *** * * * consensus_4151#0 CATCCTCCTCTTCCGCTGCCAAGCTCATCGCCCGCCTCCTCTCCGCGCTATCGAGCTCGT 298 consensus_4151#1 CCGCCCCTCAGCGCGCTGCCAAGCTCGTGGCCGGCGTCCTCTCCGCGCTATCTAGCTGGA 290 * ** * ************* * *** ** **************** **** * consensus_4151#0 CGCCTGCCTCCTCTCCGCGACGCCGAGCTTGTCGGCCCGTCTCCCAGATCTACACCGGAG 358 consensus_4151#1 CGCC-ACCTCCTCTGAGCAGCACCAAGCTGGTCGGNCCGTCTGGCAGATCTACACCGGAG 349 **** ******** ** * ** **** ***** ****** **************** consensus_4151#0 AGGGAGAGGCCGCGCCGGTGTGGAGAGGAAAAGGGGGAAGGCCACAACGGGGAGAGGAGC 418 consensus_4151#1 AGGGAGAGGCCGCGCCGGTGTGGAGAGGAAAAGGGGGAAGGCCACAACGGGGAGAGGAGC 409 ************************************************************ consensus_4151#0 GGCGACGTCGTCCTCCTCTCCGCCGCCGCTCTTCCTCGCCCCTGGAGAGAGGAACGTCGA 478 consensus_4151#1 GACGACGTCGTCCTCCTCTCCGCCGCCGCTCTTCCTCGCCCCTGGAGAGAGGAACGTCGA 469 * ********************************************************** consensus_4151#0 ACACCGCCGTGGCTTCCTGCCCACTGCCACTCCGGTCGCCGCTCACTTCCTCCGCCTCAG 538 consensus_4151#1 ACACCGCCGTGGCTTCCTGCCCACTGCCACTCCGGTCGCCGCTCACTTCCTCCGCCTCAG 529 ************************************************************ consensus_4151#0 CGCCGCTACCTCGCTTCCTTCCGCCGGTAGGGAACGGATAAAGGAGAGAGAGAGGAGAGA 598 consensus_4151#1 CGCCGCTACCTCGCTTCCTTCCGCCGGTAGGGAACGGATAAAGGAGAGAGAGAGGAGAGA 589 ************************************************************ consensus_4151#0 TGGAAAGTGAGGATAGAAAAAAAGACTGGTGGGACCCACTCAAAGGAATATGCACCGTGG 658 consensus_4151#1 TGGAAAGTGAGGATA--------------------------------------------- 604 *************** consensus_4151#0 AGCATGTATCTAACAATGTTCTTGGGTGTTCTTGAGCTAAGTTGGCACACGAGGCTCCAC 718 consensus_4151#1 ------------------------------------------------------------ consensus_4151#0 AAATATTTGTGACCCACTGCTAATACCCTAAGAGAGGAGAGATAAGGAAAACGGGTTACA 778 consensus_4151#1 ------------------------------------------------------------ consensus_4151#0 AATTTATAGCCAGCCGCAGCACGTACTCCAAAACACTATGTGTATGAGAGGTGAGATCAT 838 consensus_4151#1 ------------------------------------------------------------ consensus_4151#0 ATATTAATCGTGTAATATATGTTTATAAGTAACTATGGTA 878 consensus_4151#1 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||