These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4158#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1463 fasta sequence [CAAAAAAGAACAAAAATCGCCATTAGCTGGCTGCTAGTGGAGTATTTCTGGGCGGGGCGCTCTCTTCCCTTCCCCCCGCGCCTCCACTTCCGCCTCCGCCTCGCGCCACCGACCATGCCTTCCTCCGCCGCAGCCGCCGCCGACGGCGGCGACATCGAGGAGGTGGACCGCCTCAAGAAGAGGATCAGGACCCTCGAGATGGAGGAGACGAAGTTGAACCAGCATATGGAACGCGTCATCCAGGGAATCGAAGCGAACGAGGCGTACCTCGTCGGCATGGTCCTCAGGATTATGGAAAAGGGCCCAGAGGATGAGACTGCTGAGGATGATTGTGATGTTGGCTTTCATTTGCAGCGAAAAATTATATTCCGTCCTATTGCTGGGGTAGTGTACCCTAGCAAACTTAAGCCTGGAGATTTAATTGGTGTTGACAGTACATCAAATGAACACTACTGTGGCATTGGTGGTCTCGAAAAACAAATTGAGGAGCTTGTGGAAGCAGTTGTGTTGCCAATAATCCACAAGAACTGCTTCCAGAGGTTGGGAATTCACCCTCCAAAAGGTGTACTTCTGTATGGACCACCTGGAACTGGGAAGACACTCGTTGCCCATGCATTTGCTTCCCAGACAAATGCAACATTTCTTAAGCTAACTGGTCCACAACTTGCCGTGAAGCTTATTGGTGAGGGAGCAAGACTTGTTCGTGATGCCTTTCAGCTTGCTAAAGAGAAAGCCCCATGCATTATTTTCATTGATGAAATTGATGCAATTGGAAGCAAGCACTTTGATAGTGGTGATAGGGAAGTGCAACAAACAATTGTGGAGCTTCTTAATCAGTTGGATGGCGTCGGGAGCTATGAGAGTATAAAGGTAATAGCTGCAACTAATCGGCCAGAAGTTCTTGATCCTGCTTTTCTGCGATCTGGCCGTTTAGATCAAAAGATTGAATTCCCTCATCCATCTGAACAGGCTAGAGTTAGAATTCTGGAGATCCACTCCCGAAAAATGGACAAAAACCCTGATGTAAACTTTGAAGAGTTGGCTTGCTGTACAGATGATTTTAATGGTGCACAGCTAAAGGCTGTATGCTTTGAGGCTAGCATGCTGGCATTTCACCGAGATGCTACAGAGGTTCGGCATGAGGACTTTGTCAGAGCAATTGCGCAAGTAAAAGACGGGAATTACTGAACAACAGCTTCAACTACTATGCATAGAGGACACCATCTAACATCTTACCTTGTGTGCAGTTGGTTCTGAGACCAGACCAAGAAGCTACTGTCACCTAACTCAAATTTTTACCATGTCTTAGATACGAGAGATCAAGTATAGTTTGAAAACAGTGGTCTGTATAGTACTGATTAGTAAGTTGAGAAATATTTGAGGCTCATAGTAGGAAGCTAATCAGAAAAGGCAACAATTGTTTTTGATAACCTTGCAAGATTTGAGTTTTTTTGACAACAGCA] [+] EMBL AK071386 [CAAAAAAGAACAAAAATCGCCATTAGCTGGCTGCTAGTGGAGTATTTCTGGGCGGGGCGCTCTCTTCCCTTCCCCCCGCGCCTCCACTTCCGCCTCCGCCTCGCGCCACCGACCATGCCTTCCTCCGCCGCAGCCGCCGCCGACGGCGGCGACATCGAGGAGGTGGACCGCCTCAAGAAGAGGATCAGGACCCTCGAGATGGAGGAGACGAAGTTGAACCAGCATATGGAACGCGTCATCCAGGGAATCGAAGCGAACGAGGCGTACCTCGTCGGCATGGTCCTCAGGATTATGGAAAAGGGCCCAGAGGATGAGACTGCTGAGGATGATTGTGATGTTGGCTTTCATTTGCAGCGAAAAATTATATTCCGTCCTATTGCTGGGGTAGTGTACCCTAGCAAACTTAAGCCTGGAGATTTAATTGGTGTTGACAGTACATCAAATGAACACTACTGTGGCATTGGTGGTCTCGAAAAACAAATTGAGGAGCTTGTGGAAGCAGTTGTGTTGCCAATAATCCACAAGAACTGCTTCCAGAGGTTGGGAATTCACCCTCCAAAAGGTGTACTTCTGTATGGACCACCTGGAACTGGGAAGACACTCGTTGCCCATGCATTTGCTTCCCAGACAAATGCAACATTTCTTAAGCTAACTGGTCCACAACTTGCCGTGAAGCTTATTGGTGAGGGAGCAAGACTTGTTCGTGATGCCTTTCAGCTTGCTAAAGAGAAAGCCCCATGCATTATTTTCATTGATGAAATTGATGCAATTGGAAGCAAGCACTTTGATAGTGGTGATAGGGAAGTGCAACAAACAATTGTGGAGCTTCTTAATCAGTTGGATGGCGTCGGGAGCTATGAGAGTATAAAGGTAATAGCTGCAACTAATCGGCCAGAAGTTCTTGATCCTGCTTTTCTGCGATCTGGCCGTTTAGATCAAAAGATTGAATTCCCTCATCCATCTGAACAGGCTAGAGTTAGAATTCTGGAGATCCACTCCCGAAAAATGGACAAAAACCCTGATGTAAACTTTGAAGAGTTGGCTTGCTGTACAGATGATTTTAATGGTGCACAGCTAAAGGCTGTATGCTTTGAGGCTAGCATGCTGGCATTTCACCGAGATGCTACAGAGGTTCGGCATGAGGACTTTGTCAGAGCAATTGCGCAAGTAAAAGACGGGAATTACTGAACAACAGCTTCAACTACTATGCATAGAGGACACCATCTAACATCTTACCTTGTGTGCAGTTGGTTCTGAGACCAGACCAAGAAGCTACTGTCACCTAACTCAAATTTTTACCATGTCTTAGATACGAGAGATCAAGTATAGTTTGAAAACAGTGGTCTGTATAGTACTGATTAGTAAGTTGAGAAATATTTGAGGCTCATAGTAGGAAGCTAATCAGAAAAGGCAACAATTGTTTTTGATAACCTTGCAAGATTTGAGTTTTTTTGACAACAGCA] [+] EMBL CF196828 [ GCGAACGAGGCGTACCTCGTCGGCATGGTCCTCAGGATTATGGAAAAGGGCCCAGAGGATGAGACTGCTGAGGATGATTGTGATGTTGGCTTTCATTTGCAGCGAAAAATTATATTCCGTCCTATTGCTGGGGTAGTGTACCCTAGCAAACTTAAGCCTGGAGATTTAATTGGTGTTGACAGTACATCAAATGAACACTACTGTGGCATTGGTGGTCTCGAAAAACAAATTGAGGAGCTTGTGGAAGCAGTTGTGTTGCCAATAATCCACAAGAACTGCTTCCAGAGGTTGGGAATTCACCCTCCAAAAGGTGTACTTCTGTATGGACCACCTGGAACTGGGAAGACACTCGTTGCCCATGCATTTGCTTCCCAGACAAATGCAACATTTCTTAAGCTAACTGGTCCACAACTTGCCGTGAAGCTTATTGGTGAGGGAGCAAGACTTGTTCGTGATGCCTTTCAGCTTGCTAAAGAGAAAGCCCCATGCATTATTTTCATTGATGAAATTGATGCAATTGGAAGCAATCACTTTGATAGTGGTGATAGGGAAGTGCANCNNNCNATTGTGGAGCNNCNTAATCAGTT ] consensusID : consensus_4158#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence [CTTTTATAATTATTCAGACTTCTTACGTGGATATTTGCAGATTGATAAACTGACATATAATTACCAGTTAAAAGAAAAAAGATTACCTACCAAATCGCTTTTTGCCCAGCTCCAAAAAAAACCAAAATCCCCATTAGCTGGCTGCTAATGGAGGATTTCGGGGCGGGGCGCTCTCTTCCCTTCCCCCCGCGCCTCCACTTCCCCCTCCGCCTCGCGCCACCGACCATGCCTTCCTCCGCCCCACCCGCCGCCGACGGAGGCGACATCTAGGAGGGGGACCCCCTCAAAAAAAGGATCCGGACCCTCCAGGGGAGAACCCGCGTCCCTCGGCCCGGGTCGGTTCTTGCAGCCGCCATTGGTCGATCAAACGATCGGTTCTTCTTGGTTTCTCGCTGGGGGGGTTTCACCTCCAATGGAGGGGGGATGGCTTGTTTATTTGCTTGCTTGC] [+] EMBL CB678928 [CTTTTATAATTATTCAGACTTCTTACGTGGATATTTGCAGATTGATAAACTGACATATAATTACCAGTTAAAAGAAAAAAGATTACCTACCAAATCGCTTTTTGCCCAGCTCCAAAAAAAACCAAAATCCCCATTAGCTGGCTGCTAATGGAGGATTTCGGGGCGGGGCGCTCTCTTCCCTTCCCCCCGCGCCTCCACTTCCCCCTCCGCCTCGCGCCACCGACCATGCCTTCCTCCGCCCCACCCGCCGCCGACGGAGGCGACATCTAGGAGGGGGACCCCCTCAAAAAAAGGATCCGGACCCTCCAGGGGAGAACCCGCGTCCCTCGGCCCGGGTCGGTTCTTGCAGCCGCCATTGGTCGATCAAACGATCGGTTCTTCTTGGTTTCTCGCTGGGGGGGTTTCACCTCCAATGGAGGGGGGATGGCTTGTTTATTTGCTTGCTTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4158#0 ------------------------------------------------------------ consensus_4158#1 CTTTTATAATTATTCAGACTTCTTACGTGGATATTTGCAGATTGATAAACTGACATATAA 60 consensus_4158#0 ---------------------------------------------------CAAAAAAGA 9 consensus_4158#1 TTACCAGTTAAAAGAAAAAAGATTACCTACCAAATCGCTTTTTGCCCAGCTCCAAAAAAA 120 * ***** * consensus_4158#0 ACAAAAATCGCCATTAGCTGGCTGCTAGTGGAGTATTTCTGGGCGGGGCGCTCTCTTCCC 69 consensus_4158#1 ACCAAAATCCCCATTAGCTGGCTGCTAATGGAGGATTTCGGGGCGGGGCGCTCTCTTCCC 180 ** ****** ***************** ***** ***** ******************** consensus_4158#0 TTCCCCCCGCGCCTCCACTTCCGCCTCCGCCTCGCGCCACCGACCATGCCTTCCTCCGCC 129 consensus_4158#1 TTCCCCCCGCGCCTCCACTTCCCCCTCCGCCTCGCGCCACCGACCATGCCTTCCTCCGCC 240 ********************** ************************************* consensus_4158#0 GCAGCCGCCGCCGACGGCGGCGACATCGAGGAGGTGGACCGCCTCAAGAAGAGGATCAGG 189 consensus_4158#1 CCACCCGCCGCCGACGGAGGCGACATCTAGGAGGGGGACCCCCTCAAAAAAAGGATCCGG 300 ** ************* ********* ****** ***** ****** ** ****** ** consensus_4158#0 ACCCTCGAGATGGAGGAGACGAAGTTGAACCAGCATATGGAACGCGTCATCCAGGGAATC 249 consensus_4158#1 ACCCTCCAG--GGGAGAACCCGCGTC---CCTCGGCCCGGGTCGGTTCTTGCAGCCGCCA 355 ****** ** ** ** * ** ** ** ** ** * *** consensus_4158#0 GAAGCGAACGAGGCGTACCTCGTCGGCATGGTCCTCAGGATTATGGAAAAGGGCCCAGAG 309 consensus_4158#1 TTGGTCGATCAAACG------ATCGGTTC--TTCTTGGTTTCTCGCTGGGGGGGTTTCAC 407 * * * ** **** * ** * * * *** * consensus_4158#0 GATGAGACTGCTGAGGATGATTGTGATGTTGGCTTTCATTTGCAGCGAAAAATTATATTC 369 consensus_4158#1 CTCCAATGGAGGGGGGATGGCTTGTTTATTTGCTT--GCTTGC----------------- 448 * * ***** * * ** **** **** consensus_4158#0 CGTCCTATTGCTGGGGTAGTGTACCCTAGCAAACTTAAGCCTGGAGATTTAATTGGTGTT 429 consensus_4158#1 ------------------------------------------------------------ consensus_4158#0 GACAGTACATCAAATGAACACTACTGTGGCATTGGTGGTCTCGAAAAACAAATTGAGGAG 489 consensus_4158#1 ------------------------------------------------------------ consensus_4158#0 CTTGTGGAAGCAGTTGTGTTGCCAATAATCCACAAGAACTGCTTCCAGAGGTTGGGAATT 549 consensus_4158#1 ------------------------------------------------------------ consensus_4158#0 CACCCTCCAAAAGGTGTACTTCTGTATGGACCACCTGGAACTGGGAAGACACTCGTTGCC 609 consensus_4158#1 ------------------------------------------------------------ consensus_4158#0 CATGCATTTGCTTCCCAGACAAATGCAACATTTCTTAAGCTAACTGGTCCACAACTTGCC 669 consensus_4158#1 ------------------------------------------------------------ consensus_4158#0 GTGAAGCTTATTGGTGAGGGAGCAAGACTTGTTCGTGATGCCTTTCAGCTTGCTAAAGAG 729 consensus_4158#1 ------------------------------------------------------------ consensus_4158#0 AAAGCCCCATGCATTATTTTCATTGATGAAATTGATGCAATTGGAAGCAAGCACTTTGAT 789 consensus_4158#1 ------------------------------------------------------------ consensus_4158#0 AGTGGTGATAGGGAAGTGCAACAAACAATTGTGGAGCTTCTTAATCAGTTGGATGGCGTC 849 consensus_4158#1 ------------------------------------------------------------ consensus_4158#0 GGGAGCTATGAGAGTATAAAGGTAATAGCTGCAACTAATCGGCCAGAAGTTCTTGATCCT 909 consensus_4158#1 ------------------------------------------------------------ consensus_4158#0 GCTTTTCTGCGATCTGGCCGTTTAGATCAAAAGATTGAATTCCCTCATCCATCTGAACAG 969 consensus_4158#1 ------------------------------------------------------------ consensus_4158#0 GCTAGAGTTAGAATTCTGGAGATCCACTCCCGAAAAATGGACAAAAACCCTGATGTAAAC 1029 consensus_4158#1 ------------------------------------------------------------ consensus_4158#0 TTTGAAGAGTTGGCTTGCTGTACAGATGATTTTAATGGTGCACAGCTAAAGGCTGTATGC 1089 consensus_4158#1 ------------------------------------------------------------ consensus_4158#0 TTTGAGGCTAGCATGCTGGCATTTCACCGAGATGCTACAGAGGTTCGGCATGAGGACTTT 1149 consensus_4158#1 ------------------------------------------------------------ consensus_4158#0 GTCAGAGCAATTGCGCAAGTAAAAGACGGGAATTACTGAACAACAGCTTCAACTACTATG 1209 consensus_4158#1 ------------------------------------------------------------ consensus_4158#0 CATAGAGGACACCATCTAACATCTTACCTTGTGTGCAGTTGGTTCTGAGACCAGACCAAG 1269 consensus_4158#1 ------------------------------------------------------------ consensus_4158#0 AAGCTACTGTCACCTAACTCAAATTTTTACCATGTCTTAGATACGAGAGATCAAGTATAG 1329 consensus_4158#1 ------------------------------------------------------------ consensus_4158#0 TTTGAAAACAGTGGTCTGTATAGTACTGATTAGTAAGTTGAGAAATATTTGAGGCTCATA 1389 consensus_4158#1 ------------------------------------------------------------ consensus_4158#0 GTAGGAAGCTAATCAGAAAAGGCAACAATTGTTTTTGATAACCTTGCAAGATTTGAGTTT 1449 consensus_4158#1 ------------------------------------------------------------ consensus_4158#0 TTTTGACAACAGCA 1463 consensus_4158#1 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||