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Oryza sativa
cluster # 4167 cluster # 4167       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4167#0 length = 1467 sequences # 3  

consensusID : consensus_4167#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1467
fasta sequence
                              [CAACACACACACACACATGACACAAGCACACACACCCCTATTCATACACATACTCCATATGTAGCCCTTTCTTGGTTTCTCTCTCTAGCAGCTACTACCCTTCAATTTCCTTAATTCTCTCTCTTCTTGTTCTTCTTCTTCCTCCATATAGCTAGCTAGAGAGAGAGAGAGAGAGAGAGAGAGGAGGTGATCAAGGGGGGGAGGTTGATCGATGTCGATGATGAGCTTCTTGAGCATGGTGGAGGCGGAGCTGCCGCCGGGGTTCAGGTTCCACCCGAGGGACGACGAGCTCATCTGCGACTACCTGGCGCCCAAGGTCGCCGGCAAGGTCGGCTTCTCCGGCCGCCGCCCGCCCATGGTCGACGTCGACCTCAACAAGGTCGAGCCATGGGACCTCCCCGAGGTGGCGTCGGTGGGCGGAAAGGAGTGGTACTTCTTCAGCCTGAGGGACCGAAAATACGCGACGGGGCAGCGTACGAACCGAGCCACGGTTTCGGGGTACTGGAAGGCCACGGGGAAGGACAGGGTGGTGGCACGAAGAGGGGCACTTGTGGGGATGAGGAAGACACTGGTGTTCTACCAGGGGAGGGCACCCAAGGGAAGGAAGACAGAGTGGGTGATGCATGAGTACAGGATGGAGGGTGTGCATGATCAACAAGCTTCCAGCTTCTCCTCCAAGGAAGACTGGGTCCTGTGCAGAGTCATCTGCAAGAGGAAATCAGGAGGGGGTGCAACCTCCAAGTCAAGAAGCCTCACCACCACCACCACCACCATTGTCCATGACACATCCACACCAACCTCCTCACCACCATTGCCACCCCTCATGGACACCACCCTAGCTCAGCTCCAGGCCTCCATGAACACCTCCTCCTCCTCCGCCATCGCCGCCGTCGCCGCACTTGAGCAAGTGCCCTGCTTCTCCAGCTTCAGCAACAGCATTGCCAGTAACAACAACAACAGCAACAGTGCTACTGTCAATGCACAGCAATGCTACCTGCCAATTGTCACAGGTAGCAACAACAATGGCATGAGCTACCTGGATCATGGCCTGCCTGAATTTGGCAGCTTCTTGGACACCCAGAGCTGTGACAAGAAGATGCTCAAGGCAGTGCTGAGCCAGCTCAACTCCATTGGGGGTGAGGTGTTGCCAGGCCTGCCTCCTCCATCTGAAATGGCTGCTGCTGTCAGCCCTTCTTGGATGAATCACTTCTAGGGAAAAATATTATTCAGACAATATAAGAATAGCTAGCTAGCTAGTAGTTGATCTTCAGTGTGTATGATGAATTGATGATTTGATATGGTATACATACTTATTTGTGTGATGGTACAATATTTATGTGTGAGTATTAATAGAGCATGCCATAGTTTTTCTGTAAGGCATAGGAAAATTCAGGACTAAAACTATGTAATGATTGCTAAAGTGTGTATACTCAGAAATCAGAAGTAGAGGTTTGCGTTGTCGAAAAA]

[+] EMBL AK071464             [CAACACACACACACACATGACACAAGCACACACACCCCTATTCATACACATACTCCATATGTAGCCCTTTCTTGGTTTCTCTCTCTAGCAGCTACTACCCTTCAATTTCCTTAATTCTCTCTCTTCTTGTTCTTCTTCTTCCTCCATATAGCTAGCTAGAGAGAGAGAGAGAGAGAGAGAGAGGAGGTGATCAAGGGGGGGAGGTTGATCGATGTCGATGATGAGCTTCTTGAGCATGGTGGAGGCGGAGCTGCCGCCGGGGTTCAGGTTCCACCCGAGGGACGACGAGCTCATCTGCGACTACCTGGCGCCCAAGGTCGCCGGCAAGGTCGGCTTCTCCGGCCGCCGCCCGCCCATGGTCGACGTCGACCTCAACAAGGTCGAGCCATGGGACCTCCCCGAGGTGGCGTCGGTGGGCGGAAAGGAGTGGTACTTCTTCAGCCTGAGGGACCGAAAATACGCGACGGGGCAGCGTACGAACCGAGCCACGGTTTCGGGGTACTGGAAGGCCACGGGGAAGGACAGGGTGGTGGCACGAAGAGGGGCACTTGTGGGGATGAGGAAGACACTGGTGTTCTACCAGGGGAGGGCACCCAAGGGAAGGAAGACAGAGTGGGTGATGCATGAGTACAGGATGGAGGGTGTGCATGATCAACAAGCTTCCAGCTTCTCCTCCAAGGAAGACTGGGTCCTGTGCAGAGTCATCTGCAAGAGGAAATCAGGAGGGGGTGCAACCTCCAAGTCAAGAAGCCTCACCACCACCACCACCACCATTGTCCATGACACATCCACACCAACCTCCTCACCACCATTGCCACCCCTCATGGACACCACCCTAGCTCAGCTCCAGGCCTCCATGAACACCTCCTCCTCCTCCGCCATCGCCGCCGTCGCCGCACTTGAGCAAGTGCCCTGCTTCTCCAGCTTCAGCAACAGCATTGCCAGTAACAACAACAACAGCAACAGTGCTACTGTCAATGCACAGCAATGCTACCTGCCAATTGTCACAGGTAGCAACAACAATGGCATGAGCTACCTGGATCATGGCCTGCCTGAATTTGGCAGCTTCTTGGACACCCAGAGCTGTGACAAGAAGATGCTCAAGGCAGTGCTGAGCCAGCTCAACTCCATTGGGGGTGAGGTGTTGCCAGGCCTGCCTCCTCCATCTGAAATGGCTGCTGCTGTCAGCCCTTCTTGGATGAATCACTTCTAGGGAAAAATATTATTCAGACAATATAAGAATAGCTAGCTAGCTAGTAGTTGATCTTCAGTGTGTATGATGAATTGATGATTTGATATGGTATACATACTTATTTGTGTGATGGTACAATATTTATGTGTGAGTATTAATAGAGCATGCCATAGTTTTTCTGTAAGGCATAGGAAAATTCAGGACTAAAACTATGTAATGATTGCTAAAGTGTGTATACTCAGAAATCAGAAGTAGAGGTTTGCGTTGTCGAAAAA]
[+] EMBL CA755857             [                           ACACACACCCCTATTCATACACATACTCCATATGTAGCCCTTTCTTGGTTTCTCTCTCTAGCAGCTACTACCCTTCAATTTCCTTAATTCTCTCTCTTCTTGTTCTTCTTCTTCCTCCATATAGCTAGCTAGAGAGAGAGAGAGAGAGAGAGAGAGGAGGTGATCAAGGGGGGGAGGTTGATCGATGTCGATGATGAGCTTCTTGAGCATGGTGGAGGCGGAGCTGCCGCCGGGGTTCAGGTTCCACCCGAGGGACGACGAGCTCATCTGCGACTACCTGGCGCCCAAGGTCGCCGGCAAGGTCGGCTTCTCCGGCCGCCGCCCGCCCATGGTCGACGTCGACCTCAACAAGGTCGAGCCATGGGACCTCCCCGAGGTGGCGTCGGTGGGCGGAAAGGAGTGGTACTTCTTCAGCCTGAGGGACCGAAAATACGCGACGGGGCAGCGTACGAACCGAGCCACGGTTTCGGGGTACTGGAAGGCCACGGGGAAGGACAGGGTGGTGGCACGAAGAGGGGCACTTGTGGNGATGAGGAAGACACTGGTGTTCTACCAGGGGAGGGCACCCNAGGGAAGGAAGACAGAGTGGGTGATGCATGAGTACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CB647365             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CATTGCCAGTAACAACAACAACAGCAACAGTGGTACTGTCAATGCACAGCAATGCTGCCTGCCAATTGTCACAGGTAGCAACAACAATGGCATGAGGTACCTGGATCATGGCCTGCCTGAATTTGGCAGCTTCTTGGACACCCAGAGCTGTGACAAGAAGATGCTCAAGGCAGTGCTGAGCCAGCTCAATTCCATTGGGGGTGAGGTGTTGCCAGGCCTGCCTCCTCCATTTGAAATGGCTGCTGCTGTCAGCTCTTCTTGGATGAATCACTTTTAGGGAAAAATATTATTCAGACAATATAAGAATAGCTAGCTAGCTAGTAGTTGATCTTCAGTGTGTATGATGAATTGATGATTTGATATGGTATACATACTTATTTGTGTGATGGTACAATATTTATGTGTGAGTATTAATAGAGCATGCCATAGTTTTTCTGTAAGGCATAGGAAAATTCAGGACTAAAACTATGTAATGATTGCTAAAGTGTGTATACTCAGAAATCAGAAGTAGAGGTTTGCGTTGTCG     ]


>consensus_4167#0 CAACACACACACACACATGACACAAGCACACACACCCCTATTCATACACATACTCCATAT GTAGCCCTTTCTTGGTTTCTCTCTCTAGCAGCTACTACCCTTCAATTTCCTTAATTCTCT CTCTTCTTGTTCTTCTTCTTCCTCCATATAGCTAGCTAGAGAGAGAGAGAGAGAGAGAGA GAGGAGGTGATCAAGGGGGGGAGGTTGATCGATGTCGATGATGAGCTTCTTGAGCATGGT GGAGGCGGAGCTGCCGCCGGGGTTCAGGTTCCACCCGAGGGACGACGAGCTCATCTGCGA CTACCTGGCGCCCAAGGTCGCCGGCAAGGTCGGCTTCTCCGGCCGCCGCCCGCCCATGGT CGACGTCGACCTCAACAAGGTCGAGCCATGGGACCTCCCCGAGGTGGCGTCGGTGGGCGG AAAGGAGTGGTACTTCTTCAGCCTGAGGGACCGAAAATACGCGACGGGGCAGCGTACGAA CCGAGCCACGGTTTCGGGGTACTGGAAGGCCACGGGGAAGGACAGGGTGGTGGCACGAAG AGGGGCACTTGTGGGGATGAGGAAGACACTGGTGTTCTACCAGGGGAGGGCACCCAAGGG AAGGAAGACAGAGTGGGTGATGCATGAGTACAGGATGGAGGGTGTGCATGATCAACAAGC TTCCAGCTTCTCCTCCAAGGAAGACTGGGTCCTGTGCAGAGTCATCTGCAAGAGGAAATC AGGAGGGGGTGCAACCTCCAAGTCAAGAAGCCTCACCACCACCACCACCACCATTGTCCA TGACACATCCACACCAACCTCCTCACCACCATTGCCACCCCTCATGGACACCACCCTAGC TCAGCTCCAGGCCTCCATGAACACCTCCTCCTCCTCCGCCATCGCCGCCGTCGCCGCACT TGAGCAAGTGCCCTGCTTCTCCAGCTTCAGCAACAGCATTGCCAGTAACAACAACAACAG CAACAGTGCTACTGTCAATGCACAGCAATGCTACCTGCCAATTGTCACAGGTAGCAACAA CAATGGCATGAGCTACCTGGATCATGGCCTGCCTGAATTTGGCAGCTTCTTGGACACCCA GAGCTGTGACAAGAAGATGCTCAAGGCAGTGCTGAGCCAGCTCAACTCCATTGGGGGTGA GGTGTTGCCAGGCCTGCCTCCTCCATCTGAAATGGCTGCTGCTGTCAGCCCTTCTTGGAT GAATCACTTCTAGGGAAAAATATTATTCAGACAATATAAGAATAGCTAGCTAGCTAGTAG TTGATCTTCAGTGTGTATGATGAATTGATGATTTGATATGGTATACATACTTATTTGTGT GATGGTACAATATTTATGTGTGAGTATTAATAGAGCATGCCATAGTTTTTCTGTAAGGCA TAGGAAAATTCAGGACTAAAACTATGTAATGATTGCTAAAGTGTGTATACTCAGAAATCA GAAGTAGAGGTTTGCGTTGTCGAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)