These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_417#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1586 fasta sequence [CAAACAGAGAACCTTTCAACTCTACAGCACGCTAATGATAACTTAAAGAAGAACAATTGTACCTTGACTGAGCAATTCGAAGTAATCAAGATTGAGCTGCAGGAGGAGGTTAAGATGGCACATGAAGAGAAGGATGCCACACTAACACAACTAGAGAAGTCAGAGGATTCTATCAAGAATCTTGAAAGTGAGTTGGCACAGCTGAAGGAGGAACTATCAGTTCAGATGGAAAGCAATTCCAGCTTGAACAAGCAATTGGAGGAGGCAATATTGAAAGTGTCAAACTTAACTGAGGAGCTCGAGACAGTTCAAGCTGAGACTGCCAGTAAAATTAATGACATGGAAACTAACACAAAAGATTTGGTAAATACAATTGTTCTATTATCTTCTCAGAAGAACAAAGTGGAGGAGCATATGAAAATTATTACCGAAGCATGCATGGAGAAAATGTCATTTATGAAAGATTTCGAAGATCAAGTAAAGCAAAAAATTACAGATCGTGAGATAGCAATTGCTTGCCTCCAGCAGAGCCTCAGAGGAATTATTGGCAGCTGCCAGAGACTCCAGTATGCATATGGAGAGGTATCCACAAAGGCATCACACCTTGAGGTACTTAGGAGGAATCACCTCGTGCAGATAGATACATTGGAGAACAAACACACAGAAATTATGGAGAAACATCGTCATTTAGGGGAGGAAAATACATCTGCAAACAAAGAGAACAGAAAGCTACAAAATCATGTCCAAGAACTTGAAGCTCAGCTCCAGCTAGCCAGGCAGAAGCTTAGAGTTACTGAGGCAGAAAGCAAAAGCAAAGAAGACAGCTATGTGATGGCAGTGGAAAAATCACATAGAGAGATCCAGTATCTTGAACAGAAAATACAGAAATATTCTGGACAGATCAACTCACTGGAAGAAACTCTCGTACAAATAAAAGGAAATGCTGAGTCCGGAACCTCCACACTGGTTGATCAATTGGATCAGCTAGAATCACATTTCAATAAGAGTTTTTCCCACTTCTCTGCCCGTTCATTTGCATGCAGTGAAGAGCTCAAGCTCTTAAGGAACAGGTTACAGCACCATCTTGCTGAACAGAAAGAATTGGTCAAGAAGAATGATGTGCTAGGTATGAGGTTGAGAGAGAAAGAAAACGTTTTGTCAGAAATGGTGAGAAGTGCTTCCGAGGCGAAGAAGAAGATGGCTCACCTTGAGAAGACAATTGACGAGAAAGAAGAAGAGATATCAGCTAGGGTGCAAGAGAAAAGAGAAGCTATCAAGCAACTGAGTAATGCAATTATTTACCACAAGAACAATAGCGATGATCTGATCCGCTACATTCGCAACCATAACCGCCGTCGCCTTCCATTTTGTTTGTAATTTTGATTAAAAATAGTAATGCCAGTAGATGTAAAGCTTGCGTATATTCTAGCTTTGAACTGTGGCAGAAAGGGAACTGTTGCCAGATATTTTTTTTCTCATCATCTCATGTATCATATAAAGTTCTGAAATACTCATCGAAGTAGTCAGACAGGTTGCCCTTTATTCTTTGGGCAACTGGAAGTGCTGAAGATATTTTTGTTGTTCTT] [+] EMBL AK106271 [CAAACAGAGAACCTTTCAACTCTACAGCACGCTAATGATAACTTAAAGAAGAACAATTGTACCTTGACTGAGCAATTCGAAGTAATCAAGATTGAGCTGCAGGAGGAGGTTAAGATGGCACATGAAGAGAAGGATGCCACACTAACACAACTAGAGAAGTCAGAGGATTCTATCAAGAATCTTGAAAGTGAGTTGGCACAGCTGAAGGAGGAACTATCAGTTCAGATGGAAAGCAATTCCAGCTTGAACAAGCAATTGGAGGAGGCAATATTGAAAGTGTCAAACTTAACTGAGGAGCTCGAGACAGTTCAAGCTGAGACTGCCAGTAAAATTAATGACATGGAAACTAACACAAAAGATTTGGTAAATACAATTGTTCTATTATCTTCTCAGAAGAACAAAGTGGAGGAGCATATGAAAATTATTACCGAAGCATGCATGGAGAAAATGTCATTTATGAAAGATTTCGAAGATCAAGTAAAGCAAAAAATTACAGATCGTGAGATAGCAATTGCTTGCCTCCAGCAGAGCCTCAGAGGAATTATTGGCAGCTGCCAGAGACTCCAGTATGCATATGGAGAGGTATCCACAAAGGCATCACACCTTGAGGTACTTAGGAGGAATCACCTCGTGCAGATAGATACATTGGAGAACAAACACACAGAAATTATGGAGAAACATCGTCATTTAGGGGAGGAAAATACATCTGCAAACAAAGAGAACAGAAAGCTACAAAATCATGTCCAAGAACTTGAAGCTCAGCTCCAGCTAGCCAGGCAGAAGCTTAGAGTTACTGAGGCAGAAAGCAAAAGCAAAGAAGACAGCTATGTGATGGCAGTGGAAAAATCACATAGAGAGATCCAGTATCTTGAACAGAAAATACAGAAATATTCTGGACAGATCAACTCACTGGAAGAAACTCTCGTACAAATAAAAGGAAATGCTGAGTCCGGAACCTCCACACTGGTTGATCAATTGGATCAGCTAGAATCACATTTCAATAAGAGTTTTTCCCACTTCTCTGCCCGTTCATTTGCATGCAGTGAAGAGCTCAAGCTCTTAAGGAACAGGTTACAGCACCATCTTGCTGAACAGAAAGAATTGGTCAAGAAGAATGATGTGCTAGGTATGAGGTTGAGAGAGAAAGAAAACGTTTTGTCAGAAATGGTGAGAAGTGCTTCCGAGGCGAAGAAGAAGATGGCTCACCTTGAGAAGACAATTGACGAGAAAGAAGAAGAGATATCAGCTAGGGTGCAAGAGAAAAGAGAAGCTATCAAGCAACTGAGTAATGCAATTATTTACCACAAGAACAATAGCGATGATCTGATCCGCTACATTCGCAACCATAACCGCCGTCGCCTTCCATTTTGTTTGTAATTTTGATTAAAAATAGTAATGCCAGTAGATGTAAAGCTTGCGTATATTCTAGCTTTGAACTGTGGCAGAAAGGGAACTGTTGCCAGATATTTTTTTTCTCATCATCTCATGTATCATATAAAGTTCTGAAATACTCATCGAAGTAGTCAGACAGGTTGCCCTTTATTCTTTGGGCAACTGGAAGTGCTGAAGATATTTTTGTTGTTCTT] consensusID : consensus_417#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence [GACTGGACTGAAGGGAGTAGAAATGAGAAGACAATTGACGAGAAAGAAGAAGAGATATCAGCTAGGGTGCAAGAGAAAAGAGAAGCTATCAAGCAACTGAGTAATGCAATTATTTACCACAAGAACAATAGCGATGATCTGATCCGCTACATTCGCAACCATAACCGCCGTCGCCTTCCATTTTGTTTGTAATTTTGATTAAAAATAGTAATGCCAGTAGATGTAAAGCTTGCGTATATTCTAGCTTTGAACTGTGGCAGAAAGGGAACTGTTGCCAGATATTTTTTTTCTCATCATCTCATGTATCATATAAAGTTCTGAAATACTCATCGAAGTAGTCAGACAGGTTGCCCTTTATTCTTTGGGCAACTGGAAGTGCTGAAGATATTTTTGTTGTTCTTTGCTCTTGTCAAAAAAAAAAA] [+] EMBL CF329738 [GACTGGACTGAAGGGAGTAGAAATGAGAAGACAATTGACGAGAAAGAAGAAGAGATATCAGCTAGGGTGCAAGAGAAAAGAGAAGCTATCAAGCAACTGAGTAATGCAATTATTTACCACAAGAACAATAGCGATGATCTGATCCGCTACATTCGCAACCATAACCGCCGTCGCCTTCCATTTTGTTTGTAATTTTGATTAAAAATAGTAATGCCAGTAGATGTAAAGCTTGCGTATATTCTAGCTTTGAACTGTGGCAGAAAGGGAACTGTTGCCAGATATTTTTTTTCTCATCATCTCATGTATCATATAAAGTTCTGAAATACTCATCGAAGTAGTCAGACAGGTTGCCCTTTATTCTTTGGGCAACTGGAAGTGCTGAAGATATTTTTGTTGTTCTTTGCTCTTGTCAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_417#0 CAAACAGAGAACCTTTCAACTCTACAGCACGCTAATGATAACTTAAAGAAGAACAATTGT 60 consensus_417#1 ------------------------------------------------------------ consensus_417#0 ACCTTGACTGAGCAATTCGAAGTAATCAAGATTGAGCTGCAGGAGGAGGTTAAGATGGCA 120 consensus_417#1 ------------------------------------------------------------ consensus_417#0 CATGAAGAGAAGGATGCCACACTAACACAACTAGAGAAGTCAGAGGATTCTATCAAGAAT 180 consensus_417#1 ------------------------------------------------------------ consensus_417#0 CTTGAAAGTGAGTTGGCACAGCTGAAGGAGGAACTATCAGTTCAGATGGAAAGCAATTCC 240 consensus_417#1 ------------------------------------------------------------ consensus_417#0 AGCTTGAACAAGCAATTGGAGGAGGCAATATTGAAAGTGTCAAACTTAACTGAGGAGCTC 300 consensus_417#1 ------------------------------------------------------------ consensus_417#0 GAGACAGTTCAAGCTGAGACTGCCAGTAAAATTAATGACATGGAAACTAACACAAAAGAT 360 consensus_417#1 ------------------------------------------------------------ consensus_417#0 TTGGTAAATACAATTGTTCTATTATCTTCTCAGAAGAACAAAGTGGAGGAGCATATGAAA 420 consensus_417#1 ------------------------------------------------------------ consensus_417#0 ATTATTACCGAAGCATGCATGGAGAAAATGTCATTTATGAAAGATTTCGAAGATCAAGTA 480 consensus_417#1 ------------------------------------------------------------ consensus_417#0 AAGCAAAAAATTACAGATCGTGAGATAGCAATTGCTTGCCTCCAGCAGAGCCTCAGAGGA 540 consensus_417#1 ------------------------------------------------------------ consensus_417#0 ATTATTGGCAGCTGCCAGAGACTCCAGTATGCATATGGAGAGGTATCCACAAAGGCATCA 600 consensus_417#1 ------------------------------------------------------------ consensus_417#0 CACCTTGAGGTACTTAGGAGGAATCACCTCGTGCAGATAGATACATTGGAGAACAAACAC 660 consensus_417#1 ------------------------------------------------------------ consensus_417#0 ACAGAAATTATGGAGAAACATCGTCATTTAGGGGAGGAAAATACATCTGCAAACAAAGAG 720 consensus_417#1 ------------------------------------------------------------ consensus_417#0 AACAGAAAGCTACAAAATCATGTCCAAGAACTTGAAGCTCAGCTCCAGCTAGCCAGGCAG 780 consensus_417#1 ------------------------------------------------------------ consensus_417#0 AAGCTTAGAGTTACTGAGGCAGAAAGCAAAAGCAAAGAAGACAGCTATGTGATGGCAGTG 840 consensus_417#1 ------------------------------------------------------------ consensus_417#0 GAAAAATCACATAGAGAGATCCAGTATCTTGAACAGAAAATACAGAAATATTCTGGACAG 900 consensus_417#1 ------------------------------------------------------------ consensus_417#0 ATCAACTCACTGGAAGAAACTCTCGTACAAATAAAAGGAAATGCTGAGTCCGGAACCTCC 960 consensus_417#1 ------------------------------------------------------------ consensus_417#0 ACACTGGTTGATCAATTGGATCAGCTAGAATCACATTTCAATAAGAGTTTTTCCCACTTC 1020 consensus_417#1 ------------------------------------------------------------ consensus_417#0 TCTGCCCGTTCATTTGCATGCAGTGAAGAGCTCAAGCTCTTAAGGAACAGGTTACAGCAC 1080 consensus_417#1 ------------------------------------------------------------ consensus_417#0 CATCTTGCTGAACAGAAAGAATTGGTCAAGAAGAATGATGTGCTAGGTATGAGGTTGAGA 1140 consensus_417#1 ------------------------------------------------------------ consensus_417#0 GAGAAAGAAAACGTTTTGTCAGAAATGGTGAGAAGTGCTTCCGAGGCGAAGAAGAAGATG 1200 consensus_417#1 --------------------------------------------GACTGGACTGAAGGGA 16 * * **** consensus_417#0 GCTCACCTTGAGAAGACAATTGACGAGAAAGAAGAAGAGATATCAGCTAGGGTGCAAGAG 1260 consensus_417#1 GTAGAAAT-GAGAAGACAATTGACGAGAAAGAAGAAGAGATATCAGCTAGGGTGCAAGAG 75 * * * *************************************************** consensus_417#0 AAAAGAGAAGCTATCAAGCAACTGAGTAATGCAATTATTTACCACAAGAACAATAGCGAT 1320 consensus_417#1 AAAAGAGAAGCTATCAAGCAACTGAGTAATGCAATTATTTACCACAAGAACAATAGCGAT 135 ************************************************************ consensus_417#0 GATCTGATCCGCTACATTCGCAACCATAACCGCCGTCGCCTTCCATTTTGTTTGTAATTT 1380 consensus_417#1 GATCTGATCCGCTACATTCGCAACCATAACCGCCGTCGCCTTCCATTTTGTTTGTAATTT 195 ************************************************************ consensus_417#0 TGATTAAAAATAGTAATGCCAGTAGATGTAAAGCTTGCGTATATTCTAGCTTTGAACTGT 1440 consensus_417#1 TGATTAAAAATAGTAATGCCAGTAGATGTAAAGCTTGCGTATATTCTAGCTTTGAACTGT 255 ************************************************************ consensus_417#0 GGCAGAAAGGGAACTGTTGCCAGATATTTTTTTTCTCATCATCTCATGTATCATATAAAG 1500 consensus_417#1 GGCAGAAAGGGAACTGTTGCCAGATATTTTTTTTCTCATCATCTCATGTATCATATAAAG 315 ************************************************************ consensus_417#0 TTCTGAAATACTCATCGAAGTAGTCAGACAGGTTGCCCTTTATTCTTTGGGCAACTGGAA 1560 consensus_417#1 TTCTGAAATACTCATCGAAGTAGTCAGACAGGTTGCCCTTTATTCTTTGGGCAACTGGAA 375 ************************************************************ consensus_417#0 GTGCTGAAGATATTTTTGTTGTTCTT--------------------- 1586 consensus_417#1 GTGCTGAAGATATTTTTGTTGTTCTTTGCTCTTGTCAAAAAAAAAAA 422 ************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||