Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4175 cluster # 4175       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4175#0 length = 1177 sequences # 2  
consensus_4175#1 length = 349 sequences # 1  

consensusID : consensus_4175#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1177
fasta sequence
                              [CCCGCCGACCAAAATCATCCTCGTCGCCGCCGCCGCCGCCACCGCCGCCGGAAGCAGTTCGTCTCCCCCGTTGGTGTTCGACCGGTGGTTAGATCCATGGACCGCCGCCCGCCGCTCGCCGTCTCCCCGCGCAGGCTCCGTCCGCGCCCGCACCGCGCTGCCGCCGCCGGCGCCGCCCCGCGCCCGCCCGTGGCTTGCTCCGTCCAGACCCCGCCAGGATCGATCAAGAAAGCAACTACCCCGATGCGCTCCTCCTTCTGCGCGCTCCCGACGTCCCGCCTTGAGCCGACGCCGCGGGCGAAGCTGGACTTCGCCGCGGCGCCCTCGCCGGCGAGAGCGGCGGTGGCGGCGGGGAAGGAGAACCGCCACGTCGACGACGAGGTGTCCCTGGACCTCACCGCCATGGCCATGCCCACGCCCATGCCCACCTGGACGGCATCTCCGCTGCCGCCGCCGACCAGCCCGCTGTTCGAGAGGGGCAGGCTCTACGACCTCTACTCCGCGCGGCGCAACGAGCGGCTCAAGCGCAAGCACGGCTTCCCCGCCGGCGAGGAGGAAGCGGAGGCGATGGCCGCCGACCCCTGCGTCGCCGTCGAGCTCTCCAAGCGCCGCGGCGCCAAGAAGATGACCGGTGCCGAGTCCGTGAGGCGGTCCGTGCCGGCGGCGGCGGACTTC-TCCGCCGCCGGCCGTG-CCG-CCACATCTACTCTGGGTCTCAGGTCCTCCCTGCGCAGCAGCAAGGAGATGAAGAAAACCTCCGCCGCGTCCTCCTCC-TTCGCCGGCGCCAAGTCGCCGGCGGCCAAGGAGAGGAGAGCCAGCACTCGCTCGTCGGCTCGGAGGTTCTGATCTCATCTGATGGAATTGATAGAAACAAAAAAAACAGTTTGATCTGGTTTGATAGGTGGAATGTTGATATTCTGAAACTATCTGCTTCAATGTCAGTATGAAAAATGGCTAGGTATTGGTAATATTGATACTGTTGGTACTGAGTTTGGAGGTTGGTTTTGGGGGAGGGAATATGGCTTCATATCTTGGATTCTTGATATAGAATTGCTGAATAAGTTGGACCATATTTGTAGCAATTTTTTGTTGCTTTGGGGTGTGCACATCCATTTTGTGATGCTATTTTTTTGAGGATTGTGATCATATTCATCCTGAGTGCTGATGAAACCGCAGTGCT]

[+] EMBL AK108961             [CCCGCCGACCAAAATCATCCTCGTCGCCGCCGCCGCCGCCACCGCCGCCGGAAGCAGTTCGTCTCCCCCGTTGGTGTTCGACCGGTGGTTAGATCCATGGACCGCCGCCCGCCGCTCGCCGTCTCCCCGCGCAGGCTCCGTCCGCGCCCGCACCGCGCTGCCGCCGCCGGCGCCGCCCCGCGCCCGCCCGTGGCTTGCTCCGTCCAGACCCCGCCAGGATCGATCAAGAAAGCAACTACCCCGATGCGCTCCTCCTTCTGCGCGCTCCCGACGTCCCGCCTTGAGCCGACGCCGCGGGCGAAGCTGGACTTCGCCGCGGCGCCCTCGCCGGCGAGAGCGGCGGTGGCGGCGGGGAAGGAGAACCGCCACGTCGACGACGAGGTGTCCCTGGACCTCACCGCCATGGCCATGCCCACGCCCATGCCCACCTGGACGGCATCTCCGCTGCCGCCGCCGACCAGCCCGCTGTTCGAGAGGGGCAGGCTCTACGACCTCTACTCCGCGCGGCGCAACGAGCGGCTCAAGCGCAAGCACGGCTTCCCCGCCGGCGAGGAGGAAGCGGAGGCGATGGCCGCCGACCCCTGCGTCGCCGTCGAGCTCTCCAAGCGCCGCGGCGCCAAGAAGATGACCGGTGCCGAGTCCGTGAGGCGGTCCGTGCCGGCGGCGGCGGACTTC TCCGCCGCCGGCCGTG CCG CCACATCTACTCTGGGTCTCAGGTCCTCCCTGCGCAGCAGCAAGGAGATGAAGAAAACCTCCGCCGCGTCCTCCTCC TTCGCCGGCGCCAAGTCGCCGGCGGCCAAGGAGAGGAGAGCCAGCACTCGCTCGTCGGCTCGGAGGTTCTGATCTCATCTGATGGAATTGATAGAAACAAAAAAAACAGTTTGATCTGGTTTGATAGGTGGAATGTTGATATTCTGAAACTATCTGCTTCAATGTCAGTATGAAAAATGGCTAGGTATTGGTAATATTGATACTGTTGGTACTGAGTTTGGAGGTTGGTTTTGGGGGAGGGAATATGGCTTCATATCTTGGATTCTTGATATAGAATTGCTGAATAAGTTGGACCATATTTGTAGCAATTTTTTGTTGCTTTGGGGTGTGCACATCCATTTTGTGATGCTATTTTTTTGAGGATTGTGATCATATTCATCCTGAGTGCTGATGAAACCGCAGTGCT]
[+] EMBL AU095599             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TGCGTCGCCGTCGAGCTCTCCAAGCGCCGCGGCGCCAAGAAGATGACCGGTGCCGAGTCCGTGAGNCGGTCCATGCCGGC GCGGCGGACTTCTTCCGCCGCCNGCCGTGCCCGCCCACATCTACTCTGGGTCTCAGGTCCCTCCTGCGCAGCAGCAAGGAGATGAAGAAAACCTCCGCCGCGTCCTCCTCCTTTCGCCGGCGCCAAGTCGCCGGCGGCCAAGGAGAGGAGAGCCAGCACTCGCTCGTCGGCTCGGAGGTTCTGATCTCATCTGATGGAATTGATAGAAACAAAAAAAACAGTTTGATCTGGTTTGATAGGTGGAATGTTGATATTCTGAAACTATCTGCTTCAATGTCAGTATGAAAAATGGCTAGGTATTGGTAATATTGATACTGTTGGTACTGAGTTTGGAGGTTGGTTTTGGGGGAGGGAATATGGCTTCATATCTTGGATTCTTGATATAGAATTGCTGAATAAGTTGGACCATATTTGTAGCAAaaaaa                                                                                             ]


>consensus_4175#0 CCCGCCGACCAAAATCATCCTCGTCGCCGCCGCCGCCGCCACCGCCGCCGGAAGCAGTTC GTCTCCCCCGTTGGTGTTCGACCGGTGGTTAGATCCATGGACCGCCGCCCGCCGCTCGCC GTCTCCCCGCGCAGGCTCCGTCCGCGCCCGCACCGCGCTGCCGCCGCCGGCGCCGCCCCG CGCCCGCCCGTGGCTTGCTCCGTCCAGACCCCGCCAGGATCGATCAAGAAAGCAACTACC CCGATGCGCTCCTCCTTCTGCGCGCTCCCGACGTCCCGCCTTGAGCCGACGCCGCGGGCG AAGCTGGACTTCGCCGCGGCGCCCTCGCCGGCGAGAGCGGCGGTGGCGGCGGGGAAGGAG AACCGCCACGTCGACGACGAGGTGTCCCTGGACCTCACCGCCATGGCCATGCCCACGCCC ATGCCCACCTGGACGGCATCTCCGCTGCCGCCGCCGACCAGCCCGCTGTTCGAGAGGGGC AGGCTCTACGACCTCTACTCCGCGCGGCGCAACGAGCGGCTCAAGCGCAAGCACGGCTTC CCCGCCGGCGAGGAGGAAGCGGAGGCGATGGCCGCCGACCCCTGCGTCGCCGTCGAGCTC TCCAAGCGCCGCGGCGCCAAGAAGATGACCGGTGCCGAGTCCGTGAGGCGGTCCGTGCCG GCGGCGGCGGACTTCTCCGCCGCCGGCCGTGCCGCCACATCTACTCTGGGTCTCAGGTCC TCCCTGCGCAGCAGCAAGGAGATGAAGAAAACCTCCGCCGCGTCCTCCTCCTTCGCCGGC GCCAAGTCGCCGGCGGCCAAGGAGAGGAGAGCCAGCACTCGCTCGTCGGCTCGGAGGTTC TGATCTCATCTGATGGAATTGATAGAAACAAAAAAAACAGTTTGATCTGGTTTGATAGGT GGAATGTTGATATTCTGAAACTATCTGCTTCAATGTCAGTATGAAAAATGGCTAGGTATT GGTAATATTGATACTGTTGGTACTGAGTTTGGAGGTTGGTTTTGGGGGAGGGAATATGGC TTCATATCTTGGATTCTTGATATAGAATTGCTGAATAAGTTGGACCATATTTGTAGCAAT TTTTTGTTGCTTTGGGGTGTGCACATCCATTTTGTGATGCTATTTTTTTGAGGATTGTGA TCATATTCATCCTGAGTGCTGATGAAACCGCAGTGCT



consensusID : consensus_4175#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 349
fasta sequence
                              [GCGCTGCCGCCGCCGGGCCGCCCCGCGCCCGCCCGTGGCTTGCTCCGTCCAGACCCCGCCATGGCCATGCCCACGCCCATGCCCACCTGGACGGCATCTCCGCTGCCGCCGCCGACCAGCCCGCTGTTCGAGAGGGGCAGGCTCTACGACCTCTACTCCGCGCGGCGCAACGAGCGGCTCAAGCGCAAGCACGGCTTCCCCGCCGGCGAGGAGGAAGCGGAGGCGATGGCCGCCGACCCCTGCGTCGCCGTCGAGCTCTCCAAGCGCCGCGGCGCCAAGAAGATGACCGGTGCCGAGTCCGTGAGGCGGTCCATGCNGGNGGCGGCGGACTTCTCCGCCGCCGGGCCGT]

[+] EMBL AU071034             [GCGCTGCCGCCGCCGGGCCGCCCCGCGCCCGCCCGTGGCTTGCTCCGTCCAGACCCCGCCATGGCCATGCCCACGCCCATGCCCACCTGGACGGCATCTCCGCTGCCGCCGCCGACCAGCCCGCTGTTCGAGAGGGGCAGGCTCTACGACCTCTACTCCGCGCGGCGCAACGAGCGGCTCAAGCGCAAGCACGGCTTCCCCGCCGGCGAGGAGGAAGCGGAGGCGATGGCCGCCGACCCCTGCGTCGCCGTCGAGCTCTCCAAGCGCCGCGGCGCCAAGAAGATGACCGGTGCCGAGTCCGTGAGGCGGTCCATGCNGGNGGCGGCGGACTTCTCCGCCGCCGGGCCGT]


>consensus_4175#1 GCGCTGCCGCCGCCGGGCCGCCCCGCGCCCGCCCGTGGCTTGCTCCGTCCAGACCCCGCC ATGGCCATGCCCACGCCCATGCCCACCTGGACGGCATCTCCGCTGCCGCCGCCGACCAGC CCGCTGTTCGAGAGGGGCAGGCTCTACGACCTCTACTCCGCGCGGCGCAACGAGCGGCTC AAGCGCAAGCACGGCTTCCCCGCCGGCGAGGAGGAAGCGGAGGCGATGGCCGCCGACCCC TGCGTCGCCGTCGAGCTCTCCAAGCGCCGCGGCGCCAAGAAGATGACCGGTGCCGAGTCC GTGAGGCGGTCCATGCNGGNGGCGGCGGACTTCTCCGCCGCCGGGCCGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4175#0      CCCGCCGACCAAAATCATCCTCGTCGCCGCCGCCGCCGCCACCGCCGCCGGAAGCAGTTC 60
consensus_4175#1      ------------------------------------------------------------
                                                                                  

consensus_4175#0      GTCTCCCCCGTTGGTGTTCGACCGGTGGTTAGATCCATGGACCGCCGCCCGCCGCTCGCC 120
consensus_4175#1      ------------------------------------------------------------
                                                                                  

consensus_4175#0      GTCTCCCCGCGCAGGCTCCGTCCGCGCCCGCACCGCGCTGCCGCCGCCGGCGCCGCCCCG 180
consensus_4175#1      ------------------------------------------------------------
                                                                                  

consensus_4175#0      CGCCCGCCCGTGGCTTGCTCCGTCCAGACCCCGCCAGGATCGATCAAGAAAGCAACTACC 240
consensus_4175#1      ------------------------------------------------------------
                                                                                  

consensus_4175#0      CCGATGCGCTCCTCCTTCTGCGCGCTCCCGACGTCCCGCCTTGAGCCGACGCCGCGGGCG 300
consensus_4175#1      ------------------------------------------------------------
                                                                                  

consensus_4175#0      AAGCTGGACTTCGCCGCGGCGCCCTCGCCGGCGAGAGCGGCGGTGGCGGCGGGGAAGGAG 360
consensus_4175#1      ---------------------------------------GCGCTGCCGCCGCCGG-GCCG 20
                                                             *** ** ** **  *  *  *

consensus_4175#0      AACCGC-CACGTCGACGACGAGGTGTCCCTGGACCTCACCGCCATGGCCATGCCCACGCC 419
consensus_4175#1      CCCCGCGCCCGCCCGTGGCTTGCTCCGTCCAGACC---CCGCCATGGCCATGCCCACGCC 77
                        **** * ** *   * *  * *    *  ****   **********************

consensus_4175#0      CATGCCCACCTGGACGGCATCTCCGCTGCCGCCGCCGACCAGCCCGCTGTTCGAGAGGGG 479
consensus_4175#1      CATGCCCACCTGGACGGCATCTCCGCTGCCGCCGCCGACCAGCCCGCTGTTCGAGAGGGG 137
                      ************************************************************

consensus_4175#0      CAGGCTCTACGACCTCTACTCCGCGCGGCGCAACGAGCGGCTCAAGCGCAAGCACGGCTT 539
consensus_4175#1      CAGGCTCTACGACCTCTACTCCGCGCGGCGCAACGAGCGGCTCAAGCGCAAGCACGGCTT 197
                      ************************************************************

consensus_4175#0      CCCCGCCGGCGAGGAGGAAGCGGAGGCGATGGCCGCCGACCCCTGCGTCGCCGTCGAGCT 599
consensus_4175#1      CCCCGCCGGCGAGGAGGAAGCGGAGGCGATGGCCGCCGACCCCTGCGTCGCCGTCGAGCT 257
                      ************************************************************

consensus_4175#0      CTCCAAGCGCCGCGGCGCCAAGAAGATGACCGGTGCCGAGTCCGTGAGGCGGTCCGTGCC 659
consensus_4175#1      CTCCAAGCGCCGCGGCGCCAAGAAGATGACCGGTGCCGAGTCCGTGAGGCGGTCCATGCN 317
                      ******************************************************* *** 

consensus_4175#0      GGCGGCGGCGGACTTCTCCGCCGCCGG-CCGTGCCGCCACATCTACTCTGGGTCTCAGGT 718
consensus_4175#1      GGNGGCGGCGGACTTCTCCGCCGCCGGGCCGT---------------------------- 349
                      ** ************************ ****                            

consensus_4175#0      CCTCCCTGCGCAGCAGCAAGGAGATGAAGAAAACCTCCGCCGCGTCCTCCTCCTTCGCCG 778
consensus_4175#1      ------------------------------------------------------------
                                                                                  

consensus_4175#0      GCGCCAAGTCGCCGGCGGCCAAGGAGAGGAGAGCCAGCACTCGCTCGTCGGCTCGGAGGT 838
consensus_4175#1      ------------------------------------------------------------
                                                                                  

consensus_4175#0      TCTGATCTCATCTGATGGAATTGATAGAAACAAAAAAAACAGTTTGATCTGGTTTGATAG 898
consensus_4175#1      ------------------------------------------------------------
                                                                                  

consensus_4175#0      GTGGAATGTTGATATTCTGAAACTATCTGCTTCAATGTCAGTATGAAAAATGGCTAGGTA 958
consensus_4175#1      ------------------------------------------------------------
                                                                                  

consensus_4175#0      TTGGTAATATTGATACTGTTGGTACTGAGTTTGGAGGTTGGTTTTGGGGGAGGGAATATG 1018
consensus_4175#1      ------------------------------------------------------------
                                                                                  

consensus_4175#0      GCTTCATATCTTGGATTCTTGATATAGAATTGCTGAATAAGTTGGACCATATTTGTAGCA 1078
consensus_4175#1      ------------------------------------------------------------
                                                                                  

consensus_4175#0      ATTTTTTGTTGCTTTGGGGTGTGCACATCCATTTTGTGATGCTATTTTTTTGAGGATTGT 1138
consensus_4175#1      ------------------------------------------------------------
                                                                                  

consensus_4175#0      GATCATATTCATCCTGAGTGCTGATGAAACCGCAGTGCT 1177
consensus_4175#1      ---------------------------------------
                                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)