|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4175#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1177 fasta sequence
[CCCGCCGACCAAAATCATCCTCGTCGCCGCCGCCGCCGCCACCGCCGCCGGAAGCAGTTCGTCTCCCCCGTTGGTGTTCGACCGGTGGTTAGATCCATGGACCGCCGCCCGCCGCTCGCCGTCTCCCCGCGCAGGCTCCGTCCGCGCCCGCACCGCGCTGCCGCCGCCGGCGCCGCCCCGCGCCCGCCCGTGGCTTGCTCCGTCCAGACCCCGCCAGGATCGATCAAGAAAGCAACTACCCCGATGCGCTCCTCCTTCTGCGCGCTCCCGACGTCCCGCCTTGAGCCGACGCCGCGGGCGAAGCTGGACTTCGCCGCGGCGCCCTCGCCGGCGAGAGCGGCGGTGGCGGCGGGGAAGGAGAACCGCCACGTCGACGACGAGGTGTCCCTGGACCTCACCGCCATGGCCATGCCCACGCCCATGCCCACCTGGACGGCATCTCCGCTGCCGCCGCCGACCAGCCCGCTGTTCGAGAGGGGCAGGCTCTACGACCTCTACTCCGCGCGGCGCAACGAGCGGCTCAAGCGCAAGCACGGCTTCCCCGCCGGCGAGGAGGAAGCGGAGGCGATGGCCGCCGACCCCTGCGTCGCCGTCGAGCTCTCCAAGCGCCGCGGCGCCAAGAAGATGACCGGTGCCGAGTCCGTGAGGCGGTCCGTGCCGGCGGCGGCGGACTTC-TCCGCCGCCGGCCGTG-CCG-CCACATCTACTCTGGGTCTCAGGTCCTCCCTGCGCAGCAGCAAGGAGATGAAGAAAACCTCCGCCGCGTCCTCCTCC-TTCGCCGGCGCCAAGTCGCCGGCGGCCAAGGAGAGGAGAGCCAGCACTCGCTCGTCGGCTCGGAGGTTCTGATCTCATCTGATGGAATTGATAGAAACAAAAAAAACAGTTTGATCTGGTTTGATAGGTGGAATGTTGATATTCTGAAACTATCTGCTTCAATGTCAGTATGAAAAATGGCTAGGTATTGGTAATATTGATACTGTTGGTACTGAGTTTGGAGGTTGGTTTTGGGGGAGGGAATATGGCTTCATATCTTGGATTCTTGATATAGAATTGCTGAATAAGTTGGACCATATTTGTAGCAATTTTTTGTTGCTTTGGGGTGTGCACATCCATTTTGTGATGCTATTTTTTTGAGGATTGTGATCATATTCATCCTGAGTGCTGATGAAACCGCAGTGCT]
[+] EMBL AK108961 [CCCGCCGACCAAAATCATCCTCGTCGCCGCCGCCGCCGCCACCGCCGCCGGAAGCAGTTCGTCTCCCCCGTTGGTGTTCGACCGGTGGTTAGATCCATGGACCGCCGCCCGCCGCTCGCCGTCTCCCCGCGCAGGCTCCGTCCGCGCCCGCACCGCGCTGCCGCCGCCGGCGCCGCCCCGCGCCCGCCCGTGGCTTGCTCCGTCCAGACCCCGCCAGGATCGATCAAGAAAGCAACTACCCCGATGCGCTCCTCCTTCTGCGCGCTCCCGACGTCCCGCCTTGAGCCGACGCCGCGGGCGAAGCTGGACTTCGCCGCGGCGCCCTCGCCGGCGAGAGCGGCGGTGGCGGCGGGGAAGGAGAACCGCCACGTCGACGACGAGGTGTCCCTGGACCTCACCGCCATGGCCATGCCCACGCCCATGCCCACCTGGACGGCATCTCCGCTGCCGCCGCCGACCAGCCCGCTGTTCGAGAGGGGCAGGCTCTACGACCTCTACTCCGCGCGGCGCAACGAGCGGCTCAAGCGCAAGCACGGCTTCCCCGCCGGCGAGGAGGAAGCGGAGGCGATGGCCGCCGACCCCTGCGTCGCCGTCGAGCTCTCCAAGCGCCGCGGCGCCAAGAAGATGACCGGTGCCGAGTCCGTGAGGCGGTCCGTGCCGGCGGCGGCGGACTTC TCCGCCGCCGGCCGTG CCG CCACATCTACTCTGGGTCTCAGGTCCTCCCTGCGCAGCAGCAAGGAGATGAAGAAAACCTCCGCCGCGTCCTCCTCC TTCGCCGGCGCCAAGTCGCCGGCGGCCAAGGAGAGGAGAGCCAGCACTCGCTCGTCGGCTCGGAGGTTCTGATCTCATCTGATGGAATTGATAGAAACAAAAAAAACAGTTTGATCTGGTTTGATAGGTGGAATGTTGATATTCTGAAACTATCTGCTTCAATGTCAGTATGAAAAATGGCTAGGTATTGGTAATATTGATACTGTTGGTACTGAGTTTGGAGGTTGGTTTTGGGGGAGGGAATATGGCTTCATATCTTGGATTCTTGATATAGAATTGCTGAATAAGTTGGACCATATTTGTAGCAATTTTTTGTTGCTTTGGGGTGTGCACATCCATTTTGTGATGCTATTTTTTTGAGGATTGTGATCATATTCATCCTGAGTGCTGATGAAACCGCAGTGCT]
[+] EMBL AU095599 [ TGCGTCGCCGTCGAGCTCTCCAAGCGCCGCGGCGCCAAGAAGATGACCGGTGCCGAGTCCGTGAGNCGGTCCATGCCGGC GCGGCGGACTTCTTCCGCCGCCNGCCGTGCCCGCCCACATCTACTCTGGGTCTCAGGTCCCTCCTGCGCAGCAGCAAGGAGATGAAGAAAACCTCCGCCGCGTCCTCCTCCTTTCGCCGGCGCCAAGTCGCCGGCGGCCAAGGAGAGGAGAGCCAGCACTCGCTCGTCGGCTCGGAGGTTCTGATCTCATCTGATGGAATTGATAGAAACAAAAAAAACAGTTTGATCTGGTTTGATAGGTGGAATGTTGATATTCTGAAACTATCTGCTTCAATGTCAGTATGAAAAATGGCTAGGTATTGGTAATATTGATACTGTTGGTACTGAGTTTGGAGGTTGGTTTTGGGGGAGGGAATATGGCTTCATATCTTGGATTCTTGATATAGAATTGCTGAATAAGTTGGACCATATTTGTAGCAAaaaaa ]
consensusID : consensus_4175#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 349 fasta sequence
[GCGCTGCCGCCGCCGGGCCGCCCCGCGCCCGCCCGTGGCTTGCTCCGTCCAGACCCCGCCATGGCCATGCCCACGCCCATGCCCACCTGGACGGCATCTCCGCTGCCGCCGCCGACCAGCCCGCTGTTCGAGAGGGGCAGGCTCTACGACCTCTACTCCGCGCGGCGCAACGAGCGGCTCAAGCGCAAGCACGGCTTCCCCGCCGGCGAGGAGGAAGCGGAGGCGATGGCCGCCGACCCCTGCGTCGCCGTCGAGCTCTCCAAGCGCCGCGGCGCCAAGAAGATGACCGGTGCCGAGTCCGTGAGGCGGTCCATGCNGGNGGCGGCGGACTTCTCCGCCGCCGGGCCGT]
[+] EMBL AU071034 [GCGCTGCCGCCGCCGGGCCGCCCCGCGCCCGCCCGTGGCTTGCTCCGTCCAGACCCCGCCATGGCCATGCCCACGCCCATGCCCACCTGGACGGCATCTCCGCTGCCGCCGCCGACCAGCCCGCTGTTCGAGAGGGGCAGGCTCTACGACCTCTACTCCGCGCGGCGCAACGAGCGGCTCAAGCGCAAGCACGGCTTCCCCGCCGGCGAGGAGGAAGCGGAGGCGATGGCCGCCGACCCCTGCGTCGCCGTCGAGCTCTCCAAGCGCCGCGGCGCCAAGAAGATGACCGGTGCCGAGTCCGTGAGGCGGTCCATGCNGGNGGCGGCGGACTTCTCCGCCGCCGGGCCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4175#0 CCCGCCGACCAAAATCATCCTCGTCGCCGCCGCCGCCGCCACCGCCGCCGGAAGCAGTTC 60
consensus_4175#1 ------------------------------------------------------------
consensus_4175#0 GTCTCCCCCGTTGGTGTTCGACCGGTGGTTAGATCCATGGACCGCCGCCCGCCGCTCGCC 120
consensus_4175#1 ------------------------------------------------------------
consensus_4175#0 GTCTCCCCGCGCAGGCTCCGTCCGCGCCCGCACCGCGCTGCCGCCGCCGGCGCCGCCCCG 180
consensus_4175#1 ------------------------------------------------------------
consensus_4175#0 CGCCCGCCCGTGGCTTGCTCCGTCCAGACCCCGCCAGGATCGATCAAGAAAGCAACTACC 240
consensus_4175#1 ------------------------------------------------------------
consensus_4175#0 CCGATGCGCTCCTCCTTCTGCGCGCTCCCGACGTCCCGCCTTGAGCCGACGCCGCGGGCG 300
consensus_4175#1 ------------------------------------------------------------
consensus_4175#0 AAGCTGGACTTCGCCGCGGCGCCCTCGCCGGCGAGAGCGGCGGTGGCGGCGGGGAAGGAG 360
consensus_4175#1 ---------------------------------------GCGCTGCCGCCGCCGG-GCCG 20
*** ** ** ** * * *
consensus_4175#0 AACCGC-CACGTCGACGACGAGGTGTCCCTGGACCTCACCGCCATGGCCATGCCCACGCC 419
consensus_4175#1 CCCCGCGCCCGCCCGTGGCTTGCTCCGTCCAGACC---CCGCCATGGCCATGCCCACGCC 77
**** * ** * * * * * * **** **********************
consensus_4175#0 CATGCCCACCTGGACGGCATCTCCGCTGCCGCCGCCGACCAGCCCGCTGTTCGAGAGGGG 479
consensus_4175#1 CATGCCCACCTGGACGGCATCTCCGCTGCCGCCGCCGACCAGCCCGCTGTTCGAGAGGGG 137
************************************************************
consensus_4175#0 CAGGCTCTACGACCTCTACTCCGCGCGGCGCAACGAGCGGCTCAAGCGCAAGCACGGCTT 539
consensus_4175#1 CAGGCTCTACGACCTCTACTCCGCGCGGCGCAACGAGCGGCTCAAGCGCAAGCACGGCTT 197
************************************************************
consensus_4175#0 CCCCGCCGGCGAGGAGGAAGCGGAGGCGATGGCCGCCGACCCCTGCGTCGCCGTCGAGCT 599
consensus_4175#1 CCCCGCCGGCGAGGAGGAAGCGGAGGCGATGGCCGCCGACCCCTGCGTCGCCGTCGAGCT 257
************************************************************
consensus_4175#0 CTCCAAGCGCCGCGGCGCCAAGAAGATGACCGGTGCCGAGTCCGTGAGGCGGTCCGTGCC 659
consensus_4175#1 CTCCAAGCGCCGCGGCGCCAAGAAGATGACCGGTGCCGAGTCCGTGAGGCGGTCCATGCN 317
******************************************************* ***
consensus_4175#0 GGCGGCGGCGGACTTCTCCGCCGCCGG-CCGTGCCGCCACATCTACTCTGGGTCTCAGGT 718
consensus_4175#1 GGNGGCGGCGGACTTCTCCGCCGCCGGGCCGT---------------------------- 349
** ************************ ****
consensus_4175#0 CCTCCCTGCGCAGCAGCAAGGAGATGAAGAAAACCTCCGCCGCGTCCTCCTCCTTCGCCG 778
consensus_4175#1 ------------------------------------------------------------
consensus_4175#0 GCGCCAAGTCGCCGGCGGCCAAGGAGAGGAGAGCCAGCACTCGCTCGTCGGCTCGGAGGT 838
consensus_4175#1 ------------------------------------------------------------
consensus_4175#0 TCTGATCTCATCTGATGGAATTGATAGAAACAAAAAAAACAGTTTGATCTGGTTTGATAG 898
consensus_4175#1 ------------------------------------------------------------
consensus_4175#0 GTGGAATGTTGATATTCTGAAACTATCTGCTTCAATGTCAGTATGAAAAATGGCTAGGTA 958
consensus_4175#1 ------------------------------------------------------------
consensus_4175#0 TTGGTAATATTGATACTGTTGGTACTGAGTTTGGAGGTTGGTTTTGGGGGAGGGAATATG 1018
consensus_4175#1 ------------------------------------------------------------
consensus_4175#0 GCTTCATATCTTGGATTCTTGATATAGAATTGCTGAATAAGTTGGACCATATTTGTAGCA 1078
consensus_4175#1 ------------------------------------------------------------
consensus_4175#0 ATTTTTTGTTGCTTTGGGGTGTGCACATCCATTTTGTGATGCTATTTTTTTGAGGATTGT 1138
consensus_4175#1 ------------------------------------------------------------
consensus_4175#0 GATCATATTCATCCTGAGTGCTGATGAAACCGCAGTGCT 1177
consensus_4175#1 ---------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||