These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4175#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1177 fasta sequence [CCCGCCGACCAAAATCATCCTCGTCGCCGCCGCCGCCGCCACCGCCGCCGGAAGCAGTTCGTCTCCCCCGTTGGTGTTCGACCGGTGGTTAGATCCATGGACCGCCGCCCGCCGCTCGCCGTCTCCCCGCGCAGGCTCCGTCCGCGCCCGCACCGCGCTGCCGCCGCCGGCGCCGCCCCGCGCCCGCCCGTGGCTTGCTCCGTCCAGACCCCGCCAGGATCGATCAAGAAAGCAACTACCCCGATGCGCTCCTCCTTCTGCGCGCTCCCGACGTCCCGCCTTGAGCCGACGCCGCGGGCGAAGCTGGACTTCGCCGCGGCGCCCTCGCCGGCGAGAGCGGCGGTGGCGGCGGGGAAGGAGAACCGCCACGTCGACGACGAGGTGTCCCTGGACCTCACCGCCATGGCCATGCCCACGCCCATGCCCACCTGGACGGCATCTCCGCTGCCGCCGCCGACCAGCCCGCTGTTCGAGAGGGGCAGGCTCTACGACCTCTACTCCGCGCGGCGCAACGAGCGGCTCAAGCGCAAGCACGGCTTCCCCGCCGGCGAGGAGGAAGCGGAGGCGATGGCCGCCGACCCCTGCGTCGCCGTCGAGCTCTCCAAGCGCCGCGGCGCCAAGAAGATGACCGGTGCCGAGTCCGTGAGGCGGTCCGTGCCGGCGGCGGCGGACTTC-TCCGCCGCCGGCCGTG-CCG-CCACATCTACTCTGGGTCTCAGGTCCTCCCTGCGCAGCAGCAAGGAGATGAAGAAAACCTCCGCCGCGTCCTCCTCC-TTCGCCGGCGCCAAGTCGCCGGCGGCCAAGGAGAGGAGAGCCAGCACTCGCTCGTCGGCTCGGAGGTTCTGATCTCATCTGATGGAATTGATAGAAACAAAAAAAACAGTTTGATCTGGTTTGATAGGTGGAATGTTGATATTCTGAAACTATCTGCTTCAATGTCAGTATGAAAAATGGCTAGGTATTGGTAATATTGATACTGTTGGTACTGAGTTTGGAGGTTGGTTTTGGGGGAGGGAATATGGCTTCATATCTTGGATTCTTGATATAGAATTGCTGAATAAGTTGGACCATATTTGTAGCAATTTTTTGTTGCTTTGGGGTGTGCACATCCATTTTGTGATGCTATTTTTTTGAGGATTGTGATCATATTCATCCTGAGTGCTGATGAAACCGCAGTGCT] [+] EMBL AK108961 [CCCGCCGACCAAAATCATCCTCGTCGCCGCCGCCGCCGCCACCGCCGCCGGAAGCAGTTCGTCTCCCCCGTTGGTGTTCGACCGGTGGTTAGATCCATGGACCGCCGCCCGCCGCTCGCCGTCTCCCCGCGCAGGCTCCGTCCGCGCCCGCACCGCGCTGCCGCCGCCGGCGCCGCCCCGCGCCCGCCCGTGGCTTGCTCCGTCCAGACCCCGCCAGGATCGATCAAGAAAGCAACTACCCCGATGCGCTCCTCCTTCTGCGCGCTCCCGACGTCCCGCCTTGAGCCGACGCCGCGGGCGAAGCTGGACTTCGCCGCGGCGCCCTCGCCGGCGAGAGCGGCGGTGGCGGCGGGGAAGGAGAACCGCCACGTCGACGACGAGGTGTCCCTGGACCTCACCGCCATGGCCATGCCCACGCCCATGCCCACCTGGACGGCATCTCCGCTGCCGCCGCCGACCAGCCCGCTGTTCGAGAGGGGCAGGCTCTACGACCTCTACTCCGCGCGGCGCAACGAGCGGCTCAAGCGCAAGCACGGCTTCCCCGCCGGCGAGGAGGAAGCGGAGGCGATGGCCGCCGACCCCTGCGTCGCCGTCGAGCTCTCCAAGCGCCGCGGCGCCAAGAAGATGACCGGTGCCGAGTCCGTGAGGCGGTCCGTGCCGGCGGCGGCGGACTTC TCCGCCGCCGGCCGTG CCG CCACATCTACTCTGGGTCTCAGGTCCTCCCTGCGCAGCAGCAAGGAGATGAAGAAAACCTCCGCCGCGTCCTCCTCC TTCGCCGGCGCCAAGTCGCCGGCGGCCAAGGAGAGGAGAGCCAGCACTCGCTCGTCGGCTCGGAGGTTCTGATCTCATCTGATGGAATTGATAGAAACAAAAAAAACAGTTTGATCTGGTTTGATAGGTGGAATGTTGATATTCTGAAACTATCTGCTTCAATGTCAGTATGAAAAATGGCTAGGTATTGGTAATATTGATACTGTTGGTACTGAGTTTGGAGGTTGGTTTTGGGGGAGGGAATATGGCTTCATATCTTGGATTCTTGATATAGAATTGCTGAATAAGTTGGACCATATTTGTAGCAATTTTTTGTTGCTTTGGGGTGTGCACATCCATTTTGTGATGCTATTTTTTTGAGGATTGTGATCATATTCATCCTGAGTGCTGATGAAACCGCAGTGCT] [+] EMBL AU095599 [ TGCGTCGCCGTCGAGCTCTCCAAGCGCCGCGGCGCCAAGAAGATGACCGGTGCCGAGTCCGTGAGNCGGTCCATGCCGGC GCGGCGGACTTCTTCCGCCGCCNGCCGTGCCCGCCCACATCTACTCTGGGTCTCAGGTCCCTCCTGCGCAGCAGCAAGGAGATGAAGAAAACCTCCGCCGCGTCCTCCTCCTTTCGCCGGCGCCAAGTCGCCGGCGGCCAAGGAGAGGAGAGCCAGCACTCGCTCGTCGGCTCGGAGGTTCTGATCTCATCTGATGGAATTGATAGAAACAAAAAAAACAGTTTGATCTGGTTTGATAGGTGGAATGTTGATATTCTGAAACTATCTGCTTCAATGTCAGTATGAAAAATGGCTAGGTATTGGTAATATTGATACTGTTGGTACTGAGTTTGGAGGTTGGTTTTGGGGGAGGGAATATGGCTTCATATCTTGGATTCTTGATATAGAATTGCTGAATAAGTTGGACCATATTTGTAGCAAaaaaa ] consensusID : consensus_4175#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 349 fasta sequence [GCGCTGCCGCCGCCGGGCCGCCCCGCGCCCGCCCGTGGCTTGCTCCGTCCAGACCCCGCCATGGCCATGCCCACGCCCATGCCCACCTGGACGGCATCTCCGCTGCCGCCGCCGACCAGCCCGCTGTTCGAGAGGGGCAGGCTCTACGACCTCTACTCCGCGCGGCGCAACGAGCGGCTCAAGCGCAAGCACGGCTTCCCCGCCGGCGAGGAGGAAGCGGAGGCGATGGCCGCCGACCCCTGCGTCGCCGTCGAGCTCTCCAAGCGCCGCGGCGCCAAGAAGATGACCGGTGCCGAGTCCGTGAGGCGGTCCATGCNGGNGGCGGCGGACTTCTCCGCCGCCGGGCCGT] [+] EMBL AU071034 [GCGCTGCCGCCGCCGGGCCGCCCCGCGCCCGCCCGTGGCTTGCTCCGTCCAGACCCCGCCATGGCCATGCCCACGCCCATGCCCACCTGGACGGCATCTCCGCTGCCGCCGCCGACCAGCCCGCTGTTCGAGAGGGGCAGGCTCTACGACCTCTACTCCGCGCGGCGCAACGAGCGGCTCAAGCGCAAGCACGGCTTCCCCGCCGGCGAGGAGGAAGCGGAGGCGATGGCCGCCGACCCCTGCGTCGCCGTCGAGCTCTCCAAGCGCCGCGGCGCCAAGAAGATGACCGGTGCCGAGTCCGTGAGGCGGTCCATGCNGGNGGCGGCGGACTTCTCCGCCGCCGGGCCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4175#0 CCCGCCGACCAAAATCATCCTCGTCGCCGCCGCCGCCGCCACCGCCGCCGGAAGCAGTTC 60 consensus_4175#1 ------------------------------------------------------------ consensus_4175#0 GTCTCCCCCGTTGGTGTTCGACCGGTGGTTAGATCCATGGACCGCCGCCCGCCGCTCGCC 120 consensus_4175#1 ------------------------------------------------------------ consensus_4175#0 GTCTCCCCGCGCAGGCTCCGTCCGCGCCCGCACCGCGCTGCCGCCGCCGGCGCCGCCCCG 180 consensus_4175#1 ------------------------------------------------------------ consensus_4175#0 CGCCCGCCCGTGGCTTGCTCCGTCCAGACCCCGCCAGGATCGATCAAGAAAGCAACTACC 240 consensus_4175#1 ------------------------------------------------------------ consensus_4175#0 CCGATGCGCTCCTCCTTCTGCGCGCTCCCGACGTCCCGCCTTGAGCCGACGCCGCGGGCG 300 consensus_4175#1 ------------------------------------------------------------ consensus_4175#0 AAGCTGGACTTCGCCGCGGCGCCCTCGCCGGCGAGAGCGGCGGTGGCGGCGGGGAAGGAG 360 consensus_4175#1 ---------------------------------------GCGCTGCCGCCGCCGG-GCCG 20 *** ** ** ** * * * consensus_4175#0 AACCGC-CACGTCGACGACGAGGTGTCCCTGGACCTCACCGCCATGGCCATGCCCACGCC 419 consensus_4175#1 CCCCGCGCCCGCCCGTGGCTTGCTCCGTCCAGACC---CCGCCATGGCCATGCCCACGCC 77 **** * ** * * * * * * **** ********************** consensus_4175#0 CATGCCCACCTGGACGGCATCTCCGCTGCCGCCGCCGACCAGCCCGCTGTTCGAGAGGGG 479 consensus_4175#1 CATGCCCACCTGGACGGCATCTCCGCTGCCGCCGCCGACCAGCCCGCTGTTCGAGAGGGG 137 ************************************************************ consensus_4175#0 CAGGCTCTACGACCTCTACTCCGCGCGGCGCAACGAGCGGCTCAAGCGCAAGCACGGCTT 539 consensus_4175#1 CAGGCTCTACGACCTCTACTCCGCGCGGCGCAACGAGCGGCTCAAGCGCAAGCACGGCTT 197 ************************************************************ consensus_4175#0 CCCCGCCGGCGAGGAGGAAGCGGAGGCGATGGCCGCCGACCCCTGCGTCGCCGTCGAGCT 599 consensus_4175#1 CCCCGCCGGCGAGGAGGAAGCGGAGGCGATGGCCGCCGACCCCTGCGTCGCCGTCGAGCT 257 ************************************************************ consensus_4175#0 CTCCAAGCGCCGCGGCGCCAAGAAGATGACCGGTGCCGAGTCCGTGAGGCGGTCCGTGCC 659 consensus_4175#1 CTCCAAGCGCCGCGGCGCCAAGAAGATGACCGGTGCCGAGTCCGTGAGGCGGTCCATGCN 317 ******************************************************* *** consensus_4175#0 GGCGGCGGCGGACTTCTCCGCCGCCGG-CCGTGCCGCCACATCTACTCTGGGTCTCAGGT 718 consensus_4175#1 GGNGGCGGCGGACTTCTCCGCCGCCGGGCCGT---------------------------- 349 ** ************************ **** consensus_4175#0 CCTCCCTGCGCAGCAGCAAGGAGATGAAGAAAACCTCCGCCGCGTCCTCCTCCTTCGCCG 778 consensus_4175#1 ------------------------------------------------------------ consensus_4175#0 GCGCCAAGTCGCCGGCGGCCAAGGAGAGGAGAGCCAGCACTCGCTCGTCGGCTCGGAGGT 838 consensus_4175#1 ------------------------------------------------------------ consensus_4175#0 TCTGATCTCATCTGATGGAATTGATAGAAACAAAAAAAACAGTTTGATCTGGTTTGATAG 898 consensus_4175#1 ------------------------------------------------------------ consensus_4175#0 GTGGAATGTTGATATTCTGAAACTATCTGCTTCAATGTCAGTATGAAAAATGGCTAGGTA 958 consensus_4175#1 ------------------------------------------------------------ consensus_4175#0 TTGGTAATATTGATACTGTTGGTACTGAGTTTGGAGGTTGGTTTTGGGGGAGGGAATATG 1018 consensus_4175#1 ------------------------------------------------------------ consensus_4175#0 GCTTCATATCTTGGATTCTTGATATAGAATTGCTGAATAAGTTGGACCATATTTGTAGCA 1078 consensus_4175#1 ------------------------------------------------------------ consensus_4175#0 ATTTTTTGTTGCTTTGGGGTGTGCACATCCATTTTGTGATGCTATTTTTTTGAGGATTGT 1138 consensus_4175#1 ------------------------------------------------------------ consensus_4175#0 GATCATATTCATCCTGAGTGCTGATGAAACCGCAGTGCT 1177 consensus_4175#1 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||