These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4176#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1344 fasta sequence [ACGAGTTCGCCGTCGGATTCTCGCAAAAGCGGCGGCGCCGCCGACGAGGACGAGGGACAGGGGGAGCAGTAGCAGGCGAGGCGCGGCGCGGCGCGGGTTTAGATGGAGGGCGGCGAGCAGGAGGAGTCGTCGGCGCAGCGGCGGGAGCGCCTCCTCGCGCTCCGCTCCTCCGCCGCAGCAGCCCCCTCGCCGTCGGCCGCACCGCATCCGCCGCCACCTGCGGCGGACGCGTGGGATCTCCCGGTGCGCGACCTGATGGACGCCTCCGCCACCACCACCGCCGCGGCCCCACGCCCGCCTCCGCGGTTCGACTACTACACCAACCCCGCCGCCGCCTTCGCCTCCTCGTCGGCTGCTTCCCACAAGCGCAAGGTCGCGGAGCCCCCGCCTCCGGGATCAGGGAACTATGGAAGCGGTTATCCTCCTCCACACCAGCACCATATGGCCCCACCACCAATTCACACTCCATCCCGATTGTCCCATGATTCACCAGGGGGCAGTCCTTGGCGAAGTCCTATGCAGTTCCAGGCTCCGATGTCAGGATACCGAGGACCTCCTCCTGGCGCTCCACCACCATGGAGCCCACATTCTGGCGTTCCACCACCATGGAATCCACATTCTGCTCCTCCATCTCAAGGCCTTTATCCACATCCACCTAGCTATGGACCCAGAAACTATAATCCTGGCCAAGGAGGCGGCCGAATGAACTATGGACCCAGAGGTAGACCAGACTCACCTTATGGAAGAGGGAGGGGCCAAAACAACTACAACAACCCAGGATCAAGGGGAAGAGGGGGAAGGGATGGCTCAGGCACTCAAAACTATTCTGGATGGCAAGATGGAAGAGTTCGCTACCACAAAAGCATGACTGATGACCCATGGCGGGATTTGCAACCTATTGTTGGCAACATAATGATACCCAGGGATGGATCCAAGTCCTGGCTTCCAGAATCACTGCGTGCAAAGAAGGATACATCTGACCGAGGCCAAGTCAAGCCTCCATCAGGATTGAGCTTGGCAGAGTACCTTGACTTGTCTTTCAACGAGGCTTCTAATGATACGTAGACCTTTGTATTGTTAAAAATGCTGTTGTTCTCGGTAGAGTTTTGTGCCCGCTGTGTTTCACTTTGAACGTGGTTCGTTTCTCATTTTCATTGCTTCCATTGGCCTAGGTAGTACACACTTACATCAGGGGTTACAATGTCCTGGTGTCCATTTACTAGCACTGTTTATGAAATTACCCTCATGATGTGGTAACATTTTTACGGTTATTTGAGGCACTAATACATGTAGGAAAAATGATAAACGGTAGTATAATTTATAATTTTATGGCTTGAGGTGTGG] [+] EMBL AK067961 [ACGAGTTCGCCGTCGGATTCTCGCAAAAGCGGCGGCGCCGCCGACGAGGACGAGGGACAGGGGGAGCAGTAGCAGGCGAGGCGCGGCGCGGCGCGGGTTTAGATGGAGGGCGGCGAGCAGGAGGAGTCGTCGGCGCAGCGGCGGGAGCGCCTCCTCGCGCTCCGCTCCTCCGCCGCAGCAGCCCCCTCGCCGTCGGCCGCACCGCATCCGCCGCCACCTGCGGCGGACGCGTGGGATCTCCCGGTGCGCGACCTGATGGACGCCTCCGCCACCACCACCGCCGCGGCCCCACGCCCGCCTCCGCGGTTCGACTACTACACCAACCCCGCCGCCGCCTTCGCCTCCTCGTCGGCTGCTTCCCACAAGCGCAAGGTCGCGGAGCCCCCGCCTCCGGGATCAGGGAACTATGGAAGCGGTTATCCTCCTCCACACCAGCACCATATGGCCCCACCACCAATTCACACTCCATCCCGATTGTCCCATGATTCACCAGGGGGCAGTCCTTGGCGAAGTCCTATGCAGTTCCAGGCTCCGATGTCAGGATACCGAGGACCTCCTCCTGGCGCTCCACCACCATGGAGCCCACATTCTGGCGTTCCACCACCATGGAATCCACATTCTGCTCCTCCATCTCAAGGCCTTTATCCACATCCACCTAGCTATGGACCCAGAAACTATAATCCTGGCCAAGGAGGCGGCCGAATGAACTATGGACCCAGAGGTAGACCAGACTCACCTTATGGAAGAGGGAGGGGCCAAAACAACTACAACAACCCAGGATCAAGGGGAAGAGGGGGAAGGGATGGCTCAGGCACTCAAAACTATTCTGGATGGCAAGATGGAAGAGTTCGCTACCACAAAAGCATGACTGATGACCCATGGCGGGATTTGCAACCTATTGTTGGCAACATAATGATACCCAGGGATGGATCCAAGTCCTGGCTTCCAGAATCACTGCGTGCAAAGAAGGATACATCTGACCGAGGCCAAGTCAAGCCTCCATCAGGATTGAGCTTGGCAGAGTACCTTGACTTGTCTTTCAACGAGGCTTCTAATGATACGTAGACCTTTGTATTGTTAAAAATGCTGTTGTTCTCGGTAGAGTTTTGTGCCCGCTGTGTTTCACTTTGAACGTGGTTCGTTTCTCATTTTCATTGCTTCCATTGGCCTAGGTAGTACACACTTACATCAGGGGTTACAATGTCCTGGTGTCCATTTACTAGCACTGTTTATGAAATTACCCTCATGATGTGGTAACATTTTTACGGTTATTTGAGGCACTAATACATGTAGGAAAAATGATAAACGGTAGTATAATTTATAATTTTATGGCTTGAGGTGTGG] [+] EMBL AK104001 [ACGAGTTCGCCGTCGGATTCTCGCAAAAGCGGCGGCGCCGCCGACGAGGACGAGGGACAGGGGGAGCAGTAGCAGGCGAGGCGCGGCGCGGCGCGGGTTTAGATGGAGGGCGGCGAGCAGGAGGAGTCGTCGGCGCAGCGGCGGGAGCGCCTCCTCGCGCTCCGCTCCTCCGCCGCAGCAGCCCCCTCGCCGTCGGCCGCACCGCATCCGCCGCCACCTGCGGCGGACGCGTGGGATCTCCCGGTGCGCGACCTGATGGACGCCTCCGCCACCACCACCGCCGCGGCCCCACGCCCGCCTCCGCGGTTCGACTACTACACCAACCCCGCCGCCGCCTTCGCCTCCTCGTCGGCTGCTTCCCACAAGCGCAAGGTCGCGGAGCCCCCGCCTCCGTGATCAGGGAACTATGGAAGCGGTTATCCTCCTCCACACCAGCACCATATGACCCCACCACCAATTCACACTCCATCCCGATTGTCCCATGATTCACCAGGGGGCAGTCCTTGGCGAAGTCCTATGCAGTTCCAGGCTCCGATGTCAGGATACCGAGGACCTCCTCCTGGCGCTCCACCACCATGGAGCCCACATTCTGGCGTTCCACCACCATGGAATCCACATTCTGCTCCTCCATCTCAAGGCCTTTATCCACATCCACCTAGCTATGGACCCAGAAACTATAATCCTGGCCAAGGAGGCGGCCGAATGAACTATGGACCCAGAGGTAGACCAGACTCACCTTATGGAAGAGGGAGGGGCCAAAACAACTACAACAACCCAGGATCAAGGGGAAGAGGGGGAAGGGATGGCTCAGGCACTCAAAACTATTCTGGATGGCAAGATGGAAGAGTTCGCTACCACAAAAGCATGACTGATGACCCATGGCGGGATTTGCAACCTATTGTTGGCAACATAATGATACCCAGGGATGGATCCAAGTCCTGGCTTCCAGAATCACTGCGTGCAAAGAAGGATACATCTGACCGAGGCCAAGTCAAGCCTCCATCAGGATTGAGCTTGGCAGAGTACCTTGACTTGTCTTTCAACGAGGCTTCTAATGATACGTAGACCTTTGTATTGTTAAAAATGCTGTTGTTCTCGGTAGAGTTTTGTGCCCGCTGTGTTTCACTTTGAACGTGGTTCGTTTCTCATTTTCATTGCTTCCATTGGCCTAGGTAGTACACACTTACATCAGGGGTTACAATGTCCTGGTGTCCATTTACTAGCACTGTTTATGAAATTACCCTCATGATGTGGTAACATTTTTACGGTTATTTGAGGCACTAATACATGTAG ] consensusID : consensus_4176#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence [GGACGAGACAAGGGGAAGAGGGGGAAGGGATGGGGGAAGGGATGGCTCAGGCACTCAAAACTATTCTGGATGGCAAGATGGAAGAGTTCGCTACCACAAAAGCATGACTGATGACCCATGGCGGGATTTGCAACCTATTGTTGGCAACATAATGATACCCAGGGATGGATCCAAGTCCTGGCTTCCAGAATCACTGCGTGCAAAGAAGGATACATCTGACCGAGGCCAAGTCAAGCCACCATCAGGATTGAGCTTGGCAGAGTACCTTGACTTGTCGTTCAACGAGGCTTCTAATGATACGTAGACCTTTGTATTGTTAAAAATGCTGTTGTTCTCGGTAGAGTTTTGTGCCCGCTGTGTTTCACTTTGAACGTGGTAATTTTCTCATTTTCATTGCTTCCATTGGCCTAGGTAGTATAGACGTACGTCAGGAGTTACAGTGCCCTGGTGTCTATTTGCTAGTACCGTTTATGAAATTCTCCTCATGTTGTGGTAACATTTTTACGGTTATTTGAGGCACTAATACATGGAGGAAAAATGATAAACGGTAGTATAATTTTAAAAAAAAAAA] [-] EMBL CA763350 [GGACGAGACAAGGGGAAGAGGGGGAAGGGATGGGGGAAGGGATGGCTCAGGCACTCAAAACTATTCTGGATGGCAAGATGGAAGAGTTCGCTACCACAAAAGCATGACTGATGACCCATGGCGGGATTTGCAACCTATTGTTGGCAACATAATGATACCCAGGGATGGATCCAAGTCCTGGCTTCCAGAATCACTGCGTGCAAAGAAGGATACATCTGACCGAGGCCAAGTCAAGCCACCATCAGGATTGAGCTTGGCAGAGTACCTTGACTTGTCGTTCAACGAGGCTTCTAATGATACGTAGACCTTTGTATTGTTAAAAATGCTGTTGTTCTCGGTAGAGTTTTGTGCCCGCTGTGTTTCACTTTGAACGTGGTAATTTTCTCATTTTCATTGCTTCCATTGGCCTAGGTAGTATAGACGTACGTCAGGAGTTACAGTGCCCTGGTGTCTATTTGCTAGTACCGTTTATGAAATTCTCCTCATGTTGTGGTAACATTTTTACGGTTATTTGAGGCACTAATACATGGAGGAAAAATGATAAACGGTAGTATAATTTTAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4176#0 ACGAGTTCGCCGTCGGATTCTCGCAAAAGCGGCGGCGCCGCCGACGAGGACGAGGGACAG 60 consensus_4176#1 ------------------------------------------------------------ consensus_4176#0 GGGGAGCAGTAGCAGGCGAGGCGCGGCGCGGCGCGGGTTTAGATGGAGGGCGGCGAGCAG 120 consensus_4176#1 ------------------------------------------------------------ consensus_4176#0 GAGGAGTCGTCGGCGCAGCGGCGGGAGCGCCTCCTCGCGCTCCGCTCCTCCGCCGCAGCA 180 consensus_4176#1 ------------------------------------------------------------ consensus_4176#0 GCCCCCTCGCCGTCGGCCGCACCGCATCCGCCGCCACCTGCGGCGGACGCGTGGGATCTC 240 consensus_4176#1 ------------------------------------------------------------ consensus_4176#0 CCGGTGCGCGACCTGATGGACGCCTCCGCCACCACCACCGCCGCGGCCCCACGCCCGCCT 300 consensus_4176#1 ------------------------------------------------------------ consensus_4176#0 CCGCGGTTCGACTACTACACCAACCCCGCCGCCGCCTTCGCCTCCTCGTCGGCTGCTTCC 360 consensus_4176#1 ------------------------------------------------------------ consensus_4176#0 CACAAGCGCAAGGTCGCGGAGCCCCCGCCTCCGGGATCAGGGAACTATGGAAGCGGTTAT 420 consensus_4176#1 ------------------------------------------------------------ consensus_4176#0 CCTCCTCCACACCAGCACCATATGGCCCCACCACCAATTCACACTCCATCCCGATTGTCC 480 consensus_4176#1 ------------------------------------------------------------ consensus_4176#0 CATGATTCACCAGGGGGCAGTCCTTGGCGAAGTCCTATGCAGTTCCAGGCTCCGATGTCA 540 consensus_4176#1 ------------------------------------------------------------ consensus_4176#0 GGATACCGAGGACCTCCTCCTGGCGCTCCACCACCATGGAGCCCACATTCTGGCGTTCCA 600 consensus_4176#1 ------------------------------------------------------------ consensus_4176#0 CCACCATGGAATCCACATTCTGCTCCTCCATCTCAAGGCCTTTATCCACATCCACCTAGC 660 consensus_4176#1 ------------------------------------------------------------ consensus_4176#0 TATGGACCCAGAAACTATAATCCTGGCCAAGGAGGCGGCCGAATGAACTATGGACCCAGA 720 consensus_4176#1 ------------------------------------------------------------ consensus_4176#0 GGTAGACCAGACTCACCTTATGGAAGAGGGAGGGGCCAAAACAACTACAACAACCCAGGA 780 consensus_4176#1 -----------------------------------------GGACGAGACAAGGGGAAGA 19 ** * * * * ** consensus_4176#0 TCAAGGGGAAGAGGGGGAAGGGATGGCTCAGGCACTCAAAACTATTCTGGATGGCAAGAT 840 consensus_4176#1 GGGGGAAGGGATGGGGGAAGGGATGGCTCAGGCACTCAAAACTATTCTGGATGGCAAGAT 79 * * ************************************************ consensus_4176#0 GGAAGAGTTCGCTACCACAAAAGCATGACTGATGACCCATGGCGGGATTTGCAACCTATT 900 consensus_4176#1 GGAAGAGTTCGCTACCACAAAAGCATGACTGATGACCCATGGCGGGATTTGCAACCTATT 139 ************************************************************ consensus_4176#0 GTTGGCAACATAATGATACCCAGGGATGGATCCAAGTCCTGGCTTCCAGAATCACTGCGT 960 consensus_4176#1 GTTGGCAACATAATGATACCCAGGGATGGATCCAAGTCCTGGCTTCCAGAATCACTGCGT 199 ************************************************************ consensus_4176#0 GCAAAGAAGGATACATCTGACCGAGGCCAAGTCAAGCCTCCATCAGGATTGAGCTTGGCA 1020 consensus_4176#1 GCAAAGAAGGATACATCTGACCGAGGCCAAGTCAAGCCACCATCAGGATTGAGCTTGGCA 259 ************************************** ********************* consensus_4176#0 GAGTACCTTGACTTGTCTTTCAACGAGGCTTCTAATGATACGTAGACCTTTGTATTGTTA 1080 consensus_4176#1 GAGTACCTTGACTTGTCGTTCAACGAGGCTTCTAATGATACGTAGACCTTTGTATTGTTA 319 ***************** ****************************************** consensus_4176#0 AAAATGCTGTTGTTCTCGGTAGAGTTTTGTGCCCGCTGTGTTTCACTTTGAACGTGGTTC 1140 consensus_4176#1 AAAATGCTGTTGTTCTCGGTAGAGTTTTGTGCCCGCTGTGTTTCACTTTGAACGTGGTAA 379 ********************************************************** consensus_4176#0 GTTTCTCATTTTCATTGCTTCCATTGGCCTAGGTAGTACACACTTACATCAGGGGTTACA 1200 consensus_4176#1 TTTTCTCATTTTCATTGCTTCCATTGGCCTAGGTAGTATAGACGTACGTCAGGAGTTACA 439 ************************************* * ** *** ***** ****** consensus_4176#0 ATGTCCTGGTGTCCATTTACTAGCACTGTTTATGAAATTACCCTCATGATGTGGTAACAT 1260 consensus_4176#1 GTGCCCTGGTGTCTATTTGCTAGTACCGTTTATGAAATTCTCCTCATGTTGTGGTAACAT 499 ** ********* **** **** ** ************ ******* *********** consensus_4176#0 TTTTACGGTTATTTGAGGCACTAATACATGTAGGAAAAATGATAAACGGTAGTATAATTT 1320 consensus_4176#1 TTTTACGGTTATTTGAGGCACTAATACATGGAGGAAAAATGATAAACGGTAGTATAATTT 559 ****************************** ***************************** consensus_4176#0 ATAATTTTATGGCTTGAGGTGTGG 1344 consensus_4176#1 TAAAAAAAAAAA------------ 571 ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||