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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4176#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1344 fasta sequence
[ACGAGTTCGCCGTCGGATTCTCGCAAAAGCGGCGGCGCCGCCGACGAGGACGAGGGACAGGGGGAGCAGTAGCAGGCGAGGCGCGGCGCGGCGCGGGTTTAGATGGAGGGCGGCGAGCAGGAGGAGTCGTCGGCGCAGCGGCGGGAGCGCCTCCTCGCGCTCCGCTCCTCCGCCGCAGCAGCCCCCTCGCCGTCGGCCGCACCGCATCCGCCGCCACCTGCGGCGGACGCGTGGGATCTCCCGGTGCGCGACCTGATGGACGCCTCCGCCACCACCACCGCCGCGGCCCCACGCCCGCCTCCGCGGTTCGACTACTACACCAACCCCGCCGCCGCCTTCGCCTCCTCGTCGGCTGCTTCCCACAAGCGCAAGGTCGCGGAGCCCCCGCCTCCGGGATCAGGGAACTATGGAAGCGGTTATCCTCCTCCACACCAGCACCATATGGCCCCACCACCAATTCACACTCCATCCCGATTGTCCCATGATTCACCAGGGGGCAGTCCTTGGCGAAGTCCTATGCAGTTCCAGGCTCCGATGTCAGGATACCGAGGACCTCCTCCTGGCGCTCCACCACCATGGAGCCCACATTCTGGCGTTCCACCACCATGGAATCCACATTCTGCTCCTCCATCTCAAGGCCTTTATCCACATCCACCTAGCTATGGACCCAGAAACTATAATCCTGGCCAAGGAGGCGGCCGAATGAACTATGGACCCAGAGGTAGACCAGACTCACCTTATGGAAGAGGGAGGGGCCAAAACAACTACAACAACCCAGGATCAAGGGGAAGAGGGGGAAGGGATGGCTCAGGCACTCAAAACTATTCTGGATGGCAAGATGGAAGAGTTCGCTACCACAAAAGCATGACTGATGACCCATGGCGGGATTTGCAACCTATTGTTGGCAACATAATGATACCCAGGGATGGATCCAAGTCCTGGCTTCCAGAATCACTGCGTGCAAAGAAGGATACATCTGACCGAGGCCAAGTCAAGCCTCCATCAGGATTGAGCTTGGCAGAGTACCTTGACTTGTCTTTCAACGAGGCTTCTAATGATACGTAGACCTTTGTATTGTTAAAAATGCTGTTGTTCTCGGTAGAGTTTTGTGCCCGCTGTGTTTCACTTTGAACGTGGTTCGTTTCTCATTTTCATTGCTTCCATTGGCCTAGGTAGTACACACTTACATCAGGGGTTACAATGTCCTGGTGTCCATTTACTAGCACTGTTTATGAAATTACCCTCATGATGTGGTAACATTTTTACGGTTATTTGAGGCACTAATACATGTAGGAAAAATGATAAACGGTAGTATAATTTATAATTTTATGGCTTGAGGTGTGG]
[+] EMBL AK067961 [ACGAGTTCGCCGTCGGATTCTCGCAAAAGCGGCGGCGCCGCCGACGAGGACGAGGGACAGGGGGAGCAGTAGCAGGCGAGGCGCGGCGCGGCGCGGGTTTAGATGGAGGGCGGCGAGCAGGAGGAGTCGTCGGCGCAGCGGCGGGAGCGCCTCCTCGCGCTCCGCTCCTCCGCCGCAGCAGCCCCCTCGCCGTCGGCCGCACCGCATCCGCCGCCACCTGCGGCGGACGCGTGGGATCTCCCGGTGCGCGACCTGATGGACGCCTCCGCCACCACCACCGCCGCGGCCCCACGCCCGCCTCCGCGGTTCGACTACTACACCAACCCCGCCGCCGCCTTCGCCTCCTCGTCGGCTGCTTCCCACAAGCGCAAGGTCGCGGAGCCCCCGCCTCCGGGATCAGGGAACTATGGAAGCGGTTATCCTCCTCCACACCAGCACCATATGGCCCCACCACCAATTCACACTCCATCCCGATTGTCCCATGATTCACCAGGGGGCAGTCCTTGGCGAAGTCCTATGCAGTTCCAGGCTCCGATGTCAGGATACCGAGGACCTCCTCCTGGCGCTCCACCACCATGGAGCCCACATTCTGGCGTTCCACCACCATGGAATCCACATTCTGCTCCTCCATCTCAAGGCCTTTATCCACATCCACCTAGCTATGGACCCAGAAACTATAATCCTGGCCAAGGAGGCGGCCGAATGAACTATGGACCCAGAGGTAGACCAGACTCACCTTATGGAAGAGGGAGGGGCCAAAACAACTACAACAACCCAGGATCAAGGGGAAGAGGGGGAAGGGATGGCTCAGGCACTCAAAACTATTCTGGATGGCAAGATGGAAGAGTTCGCTACCACAAAAGCATGACTGATGACCCATGGCGGGATTTGCAACCTATTGTTGGCAACATAATGATACCCAGGGATGGATCCAAGTCCTGGCTTCCAGAATCACTGCGTGCAAAGAAGGATACATCTGACCGAGGCCAAGTCAAGCCTCCATCAGGATTGAGCTTGGCAGAGTACCTTGACTTGTCTTTCAACGAGGCTTCTAATGATACGTAGACCTTTGTATTGTTAAAAATGCTGTTGTTCTCGGTAGAGTTTTGTGCCCGCTGTGTTTCACTTTGAACGTGGTTCGTTTCTCATTTTCATTGCTTCCATTGGCCTAGGTAGTACACACTTACATCAGGGGTTACAATGTCCTGGTGTCCATTTACTAGCACTGTTTATGAAATTACCCTCATGATGTGGTAACATTTTTACGGTTATTTGAGGCACTAATACATGTAGGAAAAATGATAAACGGTAGTATAATTTATAATTTTATGGCTTGAGGTGTGG]
[+] EMBL AK104001 [ACGAGTTCGCCGTCGGATTCTCGCAAAAGCGGCGGCGCCGCCGACGAGGACGAGGGACAGGGGGAGCAGTAGCAGGCGAGGCGCGGCGCGGCGCGGGTTTAGATGGAGGGCGGCGAGCAGGAGGAGTCGTCGGCGCAGCGGCGGGAGCGCCTCCTCGCGCTCCGCTCCTCCGCCGCAGCAGCCCCCTCGCCGTCGGCCGCACCGCATCCGCCGCCACCTGCGGCGGACGCGTGGGATCTCCCGGTGCGCGACCTGATGGACGCCTCCGCCACCACCACCGCCGCGGCCCCACGCCCGCCTCCGCGGTTCGACTACTACACCAACCCCGCCGCCGCCTTCGCCTCCTCGTCGGCTGCTTCCCACAAGCGCAAGGTCGCGGAGCCCCCGCCTCCGTGATCAGGGAACTATGGAAGCGGTTATCCTCCTCCACACCAGCACCATATGACCCCACCACCAATTCACACTCCATCCCGATTGTCCCATGATTCACCAGGGGGCAGTCCTTGGCGAAGTCCTATGCAGTTCCAGGCTCCGATGTCAGGATACCGAGGACCTCCTCCTGGCGCTCCACCACCATGGAGCCCACATTCTGGCGTTCCACCACCATGGAATCCACATTCTGCTCCTCCATCTCAAGGCCTTTATCCACATCCACCTAGCTATGGACCCAGAAACTATAATCCTGGCCAAGGAGGCGGCCGAATGAACTATGGACCCAGAGGTAGACCAGACTCACCTTATGGAAGAGGGAGGGGCCAAAACAACTACAACAACCCAGGATCAAGGGGAAGAGGGGGAAGGGATGGCTCAGGCACTCAAAACTATTCTGGATGGCAAGATGGAAGAGTTCGCTACCACAAAAGCATGACTGATGACCCATGGCGGGATTTGCAACCTATTGTTGGCAACATAATGATACCCAGGGATGGATCCAAGTCCTGGCTTCCAGAATCACTGCGTGCAAAGAAGGATACATCTGACCGAGGCCAAGTCAAGCCTCCATCAGGATTGAGCTTGGCAGAGTACCTTGACTTGTCTTTCAACGAGGCTTCTAATGATACGTAGACCTTTGTATTGTTAAAAATGCTGTTGTTCTCGGTAGAGTTTTGTGCCCGCTGTGTTTCACTTTGAACGTGGTTCGTTTCTCATTTTCATTGCTTCCATTGGCCTAGGTAGTACACACTTACATCAGGGGTTACAATGTCCTGGTGTCCATTTACTAGCACTGTTTATGAAATTACCCTCATGATGTGGTAACATTTTTACGGTTATTTGAGGCACTAATACATGTAG ]
consensusID : consensus_4176#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence
[GGACGAGACAAGGGGAAGAGGGGGAAGGGATGGGGGAAGGGATGGCTCAGGCACTCAAAACTATTCTGGATGGCAAGATGGAAGAGTTCGCTACCACAAAAGCATGACTGATGACCCATGGCGGGATTTGCAACCTATTGTTGGCAACATAATGATACCCAGGGATGGATCCAAGTCCTGGCTTCCAGAATCACTGCGTGCAAAGAAGGATACATCTGACCGAGGCCAAGTCAAGCCACCATCAGGATTGAGCTTGGCAGAGTACCTTGACTTGTCGTTCAACGAGGCTTCTAATGATACGTAGACCTTTGTATTGTTAAAAATGCTGTTGTTCTCGGTAGAGTTTTGTGCCCGCTGTGTTTCACTTTGAACGTGGTAATTTTCTCATTTTCATTGCTTCCATTGGCCTAGGTAGTATAGACGTACGTCAGGAGTTACAGTGCCCTGGTGTCTATTTGCTAGTACCGTTTATGAAATTCTCCTCATGTTGTGGTAACATTTTTACGGTTATTTGAGGCACTAATACATGGAGGAAAAATGATAAACGGTAGTATAATTTTAAAAAAAAAAA]
[-] EMBL CA763350 [GGACGAGACAAGGGGAAGAGGGGGAAGGGATGGGGGAAGGGATGGCTCAGGCACTCAAAACTATTCTGGATGGCAAGATGGAAGAGTTCGCTACCACAAAAGCATGACTGATGACCCATGGCGGGATTTGCAACCTATTGTTGGCAACATAATGATACCCAGGGATGGATCCAAGTCCTGGCTTCCAGAATCACTGCGTGCAAAGAAGGATACATCTGACCGAGGCCAAGTCAAGCCACCATCAGGATTGAGCTTGGCAGAGTACCTTGACTTGTCGTTCAACGAGGCTTCTAATGATACGTAGACCTTTGTATTGTTAAAAATGCTGTTGTTCTCGGTAGAGTTTTGTGCCCGCTGTGTTTCACTTTGAACGTGGTAATTTTCTCATTTTCATTGCTTCCATTGGCCTAGGTAGTATAGACGTACGTCAGGAGTTACAGTGCCCTGGTGTCTATTTGCTAGTACCGTTTATGAAATTCTCCTCATGTTGTGGTAACATTTTTACGGTTATTTGAGGCACTAATACATGGAGGAAAAATGATAAACGGTAGTATAATTTTAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4176#0 ACGAGTTCGCCGTCGGATTCTCGCAAAAGCGGCGGCGCCGCCGACGAGGACGAGGGACAG 60
consensus_4176#1 ------------------------------------------------------------
consensus_4176#0 GGGGAGCAGTAGCAGGCGAGGCGCGGCGCGGCGCGGGTTTAGATGGAGGGCGGCGAGCAG 120
consensus_4176#1 ------------------------------------------------------------
consensus_4176#0 GAGGAGTCGTCGGCGCAGCGGCGGGAGCGCCTCCTCGCGCTCCGCTCCTCCGCCGCAGCA 180
consensus_4176#1 ------------------------------------------------------------
consensus_4176#0 GCCCCCTCGCCGTCGGCCGCACCGCATCCGCCGCCACCTGCGGCGGACGCGTGGGATCTC 240
consensus_4176#1 ------------------------------------------------------------
consensus_4176#0 CCGGTGCGCGACCTGATGGACGCCTCCGCCACCACCACCGCCGCGGCCCCACGCCCGCCT 300
consensus_4176#1 ------------------------------------------------------------
consensus_4176#0 CCGCGGTTCGACTACTACACCAACCCCGCCGCCGCCTTCGCCTCCTCGTCGGCTGCTTCC 360
consensus_4176#1 ------------------------------------------------------------
consensus_4176#0 CACAAGCGCAAGGTCGCGGAGCCCCCGCCTCCGGGATCAGGGAACTATGGAAGCGGTTAT 420
consensus_4176#1 ------------------------------------------------------------
consensus_4176#0 CCTCCTCCACACCAGCACCATATGGCCCCACCACCAATTCACACTCCATCCCGATTGTCC 480
consensus_4176#1 ------------------------------------------------------------
consensus_4176#0 CATGATTCACCAGGGGGCAGTCCTTGGCGAAGTCCTATGCAGTTCCAGGCTCCGATGTCA 540
consensus_4176#1 ------------------------------------------------------------
consensus_4176#0 GGATACCGAGGACCTCCTCCTGGCGCTCCACCACCATGGAGCCCACATTCTGGCGTTCCA 600
consensus_4176#1 ------------------------------------------------------------
consensus_4176#0 CCACCATGGAATCCACATTCTGCTCCTCCATCTCAAGGCCTTTATCCACATCCACCTAGC 660
consensus_4176#1 ------------------------------------------------------------
consensus_4176#0 TATGGACCCAGAAACTATAATCCTGGCCAAGGAGGCGGCCGAATGAACTATGGACCCAGA 720
consensus_4176#1 ------------------------------------------------------------
consensus_4176#0 GGTAGACCAGACTCACCTTATGGAAGAGGGAGGGGCCAAAACAACTACAACAACCCAGGA 780
consensus_4176#1 -----------------------------------------GGACGAGACAAGGGGAAGA 19
** * * * * **
consensus_4176#0 TCAAGGGGAAGAGGGGGAAGGGATGGCTCAGGCACTCAAAACTATTCTGGATGGCAAGAT 840
consensus_4176#1 GGGGGAAGGGATGGGGGAAGGGATGGCTCAGGCACTCAAAACTATTCTGGATGGCAAGAT 79
* * ************************************************
consensus_4176#0 GGAAGAGTTCGCTACCACAAAAGCATGACTGATGACCCATGGCGGGATTTGCAACCTATT 900
consensus_4176#1 GGAAGAGTTCGCTACCACAAAAGCATGACTGATGACCCATGGCGGGATTTGCAACCTATT 139
************************************************************
consensus_4176#0 GTTGGCAACATAATGATACCCAGGGATGGATCCAAGTCCTGGCTTCCAGAATCACTGCGT 960
consensus_4176#1 GTTGGCAACATAATGATACCCAGGGATGGATCCAAGTCCTGGCTTCCAGAATCACTGCGT 199
************************************************************
consensus_4176#0 GCAAAGAAGGATACATCTGACCGAGGCCAAGTCAAGCCTCCATCAGGATTGAGCTTGGCA 1020
consensus_4176#1 GCAAAGAAGGATACATCTGACCGAGGCCAAGTCAAGCCACCATCAGGATTGAGCTTGGCA 259
************************************** *********************
consensus_4176#0 GAGTACCTTGACTTGTCTTTCAACGAGGCTTCTAATGATACGTAGACCTTTGTATTGTTA 1080
consensus_4176#1 GAGTACCTTGACTTGTCGTTCAACGAGGCTTCTAATGATACGTAGACCTTTGTATTGTTA 319
***************** ******************************************
consensus_4176#0 AAAATGCTGTTGTTCTCGGTAGAGTTTTGTGCCCGCTGTGTTTCACTTTGAACGTGGTTC 1140
consensus_4176#1 AAAATGCTGTTGTTCTCGGTAGAGTTTTGTGCCCGCTGTGTTTCACTTTGAACGTGGTAA 379
**********************************************************
consensus_4176#0 GTTTCTCATTTTCATTGCTTCCATTGGCCTAGGTAGTACACACTTACATCAGGGGTTACA 1200
consensus_4176#1 TTTTCTCATTTTCATTGCTTCCATTGGCCTAGGTAGTATAGACGTACGTCAGGAGTTACA 439
************************************* * ** *** ***** ******
consensus_4176#0 ATGTCCTGGTGTCCATTTACTAGCACTGTTTATGAAATTACCCTCATGATGTGGTAACAT 1260
consensus_4176#1 GTGCCCTGGTGTCTATTTGCTAGTACCGTTTATGAAATTCTCCTCATGTTGTGGTAACAT 499
** ********* **** **** ** ************ ******* ***********
consensus_4176#0 TTTTACGGTTATTTGAGGCACTAATACATGTAGGAAAAATGATAAACGGTAGTATAATTT 1320
consensus_4176#1 TTTTACGGTTATTTGAGGCACTAATACATGGAGGAAAAATGATAAACGGTAGTATAATTT 559
****************************** *****************************
consensus_4176#0 ATAATTTTATGGCTTGAGGTGTGG 1344
consensus_4176#1 TAAAAAAAAAAA------------ 571
** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||