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Oryza sativa
cluster # 4176 cluster # 4176       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4176#0 length = 1344 sequences # 2  
consensus_4176#1 length = 571 sequences # 1  

consensusID : consensus_4176#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1344
fasta sequence
                              [ACGAGTTCGCCGTCGGATTCTCGCAAAAGCGGCGGCGCCGCCGACGAGGACGAGGGACAGGGGGAGCAGTAGCAGGCGAGGCGCGGCGCGGCGCGGGTTTAGATGGAGGGCGGCGAGCAGGAGGAGTCGTCGGCGCAGCGGCGGGAGCGCCTCCTCGCGCTCCGCTCCTCCGCCGCAGCAGCCCCCTCGCCGTCGGCCGCACCGCATCCGCCGCCACCTGCGGCGGACGCGTGGGATCTCCCGGTGCGCGACCTGATGGACGCCTCCGCCACCACCACCGCCGCGGCCCCACGCCCGCCTCCGCGGTTCGACTACTACACCAACCCCGCCGCCGCCTTCGCCTCCTCGTCGGCTGCTTCCCACAAGCGCAAGGTCGCGGAGCCCCCGCCTCCGGGATCAGGGAACTATGGAAGCGGTTATCCTCCTCCACACCAGCACCATATGGCCCCACCACCAATTCACACTCCATCCCGATTGTCCCATGATTCACCAGGGGGCAGTCCTTGGCGAAGTCCTATGCAGTTCCAGGCTCCGATGTCAGGATACCGAGGACCTCCTCCTGGCGCTCCACCACCATGGAGCCCACATTCTGGCGTTCCACCACCATGGAATCCACATTCTGCTCCTCCATCTCAAGGCCTTTATCCACATCCACCTAGCTATGGACCCAGAAACTATAATCCTGGCCAAGGAGGCGGCCGAATGAACTATGGACCCAGAGGTAGACCAGACTCACCTTATGGAAGAGGGAGGGGCCAAAACAACTACAACAACCCAGGATCAAGGGGAAGAGGGGGAAGGGATGGCTCAGGCACTCAAAACTATTCTGGATGGCAAGATGGAAGAGTTCGCTACCACAAAAGCATGACTGATGACCCATGGCGGGATTTGCAACCTATTGTTGGCAACATAATGATACCCAGGGATGGATCCAAGTCCTGGCTTCCAGAATCACTGCGTGCAAAGAAGGATACATCTGACCGAGGCCAAGTCAAGCCTCCATCAGGATTGAGCTTGGCAGAGTACCTTGACTTGTCTTTCAACGAGGCTTCTAATGATACGTAGACCTTTGTATTGTTAAAAATGCTGTTGTTCTCGGTAGAGTTTTGTGCCCGCTGTGTTTCACTTTGAACGTGGTTCGTTTCTCATTTTCATTGCTTCCATTGGCCTAGGTAGTACACACTTACATCAGGGGTTACAATGTCCTGGTGTCCATTTACTAGCACTGTTTATGAAATTACCCTCATGATGTGGTAACATTTTTACGGTTATTTGAGGCACTAATACATGTAGGAAAAATGATAAACGGTAGTATAATTTATAATTTTATGGCTTGAGGTGTGG]

[+] EMBL AK067961             [ACGAGTTCGCCGTCGGATTCTCGCAAAAGCGGCGGCGCCGCCGACGAGGACGAGGGACAGGGGGAGCAGTAGCAGGCGAGGCGCGGCGCGGCGCGGGTTTAGATGGAGGGCGGCGAGCAGGAGGAGTCGTCGGCGCAGCGGCGGGAGCGCCTCCTCGCGCTCCGCTCCTCCGCCGCAGCAGCCCCCTCGCCGTCGGCCGCACCGCATCCGCCGCCACCTGCGGCGGACGCGTGGGATCTCCCGGTGCGCGACCTGATGGACGCCTCCGCCACCACCACCGCCGCGGCCCCACGCCCGCCTCCGCGGTTCGACTACTACACCAACCCCGCCGCCGCCTTCGCCTCCTCGTCGGCTGCTTCCCACAAGCGCAAGGTCGCGGAGCCCCCGCCTCCGGGATCAGGGAACTATGGAAGCGGTTATCCTCCTCCACACCAGCACCATATGGCCCCACCACCAATTCACACTCCATCCCGATTGTCCCATGATTCACCAGGGGGCAGTCCTTGGCGAAGTCCTATGCAGTTCCAGGCTCCGATGTCAGGATACCGAGGACCTCCTCCTGGCGCTCCACCACCATGGAGCCCACATTCTGGCGTTCCACCACCATGGAATCCACATTCTGCTCCTCCATCTCAAGGCCTTTATCCACATCCACCTAGCTATGGACCCAGAAACTATAATCCTGGCCAAGGAGGCGGCCGAATGAACTATGGACCCAGAGGTAGACCAGACTCACCTTATGGAAGAGGGAGGGGCCAAAACAACTACAACAACCCAGGATCAAGGGGAAGAGGGGGAAGGGATGGCTCAGGCACTCAAAACTATTCTGGATGGCAAGATGGAAGAGTTCGCTACCACAAAAGCATGACTGATGACCCATGGCGGGATTTGCAACCTATTGTTGGCAACATAATGATACCCAGGGATGGATCCAAGTCCTGGCTTCCAGAATCACTGCGTGCAAAGAAGGATACATCTGACCGAGGCCAAGTCAAGCCTCCATCAGGATTGAGCTTGGCAGAGTACCTTGACTTGTCTTTCAACGAGGCTTCTAATGATACGTAGACCTTTGTATTGTTAAAAATGCTGTTGTTCTCGGTAGAGTTTTGTGCCCGCTGTGTTTCACTTTGAACGTGGTTCGTTTCTCATTTTCATTGCTTCCATTGGCCTAGGTAGTACACACTTACATCAGGGGTTACAATGTCCTGGTGTCCATTTACTAGCACTGTTTATGAAATTACCCTCATGATGTGGTAACATTTTTACGGTTATTTGAGGCACTAATACATGTAGGAAAAATGATAAACGGTAGTATAATTTATAATTTTATGGCTTGAGGTGTGG]
[+] EMBL AK104001             [ACGAGTTCGCCGTCGGATTCTCGCAAAAGCGGCGGCGCCGCCGACGAGGACGAGGGACAGGGGGAGCAGTAGCAGGCGAGGCGCGGCGCGGCGCGGGTTTAGATGGAGGGCGGCGAGCAGGAGGAGTCGTCGGCGCAGCGGCGGGAGCGCCTCCTCGCGCTCCGCTCCTCCGCCGCAGCAGCCCCCTCGCCGTCGGCCGCACCGCATCCGCCGCCACCTGCGGCGGACGCGTGGGATCTCCCGGTGCGCGACCTGATGGACGCCTCCGCCACCACCACCGCCGCGGCCCCACGCCCGCCTCCGCGGTTCGACTACTACACCAACCCCGCCGCCGCCTTCGCCTCCTCGTCGGCTGCTTCCCACAAGCGCAAGGTCGCGGAGCCCCCGCCTCCGTGATCAGGGAACTATGGAAGCGGTTATCCTCCTCCACACCAGCACCATATGACCCCACCACCAATTCACACTCCATCCCGATTGTCCCATGATTCACCAGGGGGCAGTCCTTGGCGAAGTCCTATGCAGTTCCAGGCTCCGATGTCAGGATACCGAGGACCTCCTCCTGGCGCTCCACCACCATGGAGCCCACATTCTGGCGTTCCACCACCATGGAATCCACATTCTGCTCCTCCATCTCAAGGCCTTTATCCACATCCACCTAGCTATGGACCCAGAAACTATAATCCTGGCCAAGGAGGCGGCCGAATGAACTATGGACCCAGAGGTAGACCAGACTCACCTTATGGAAGAGGGAGGGGCCAAAACAACTACAACAACCCAGGATCAAGGGGAAGAGGGGGAAGGGATGGCTCAGGCACTCAAAACTATTCTGGATGGCAAGATGGAAGAGTTCGCTACCACAAAAGCATGACTGATGACCCATGGCGGGATTTGCAACCTATTGTTGGCAACATAATGATACCCAGGGATGGATCCAAGTCCTGGCTTCCAGAATCACTGCGTGCAAAGAAGGATACATCTGACCGAGGCCAAGTCAAGCCTCCATCAGGATTGAGCTTGGCAGAGTACCTTGACTTGTCTTTCAACGAGGCTTCTAATGATACGTAGACCTTTGTATTGTTAAAAATGCTGTTGTTCTCGGTAGAGTTTTGTGCCCGCTGTGTTTCACTTTGAACGTGGTTCGTTTCTCATTTTCATTGCTTCCATTGGCCTAGGTAGTACACACTTACATCAGGGGTTACAATGTCCTGGTGTCCATTTACTAGCACTGTTTATGAAATTACCCTCATGATGTGGTAACATTTTTACGGTTATTTGAGGCACTAATACATGTAG                                                   ]


>consensus_4176#0 ACGAGTTCGCCGTCGGATTCTCGCAAAAGCGGCGGCGCCGCCGACGAGGACGAGGGACAG GGGGAGCAGTAGCAGGCGAGGCGCGGCGCGGCGCGGGTTTAGATGGAGGGCGGCGAGCAG GAGGAGTCGTCGGCGCAGCGGCGGGAGCGCCTCCTCGCGCTCCGCTCCTCCGCCGCAGCA GCCCCCTCGCCGTCGGCCGCACCGCATCCGCCGCCACCTGCGGCGGACGCGTGGGATCTC CCGGTGCGCGACCTGATGGACGCCTCCGCCACCACCACCGCCGCGGCCCCACGCCCGCCT CCGCGGTTCGACTACTACACCAACCCCGCCGCCGCCTTCGCCTCCTCGTCGGCTGCTTCC CACAAGCGCAAGGTCGCGGAGCCCCCGCCTCCGGGATCAGGGAACTATGGAAGCGGTTAT CCTCCTCCACACCAGCACCATATGGCCCCACCACCAATTCACACTCCATCCCGATTGTCC CATGATTCACCAGGGGGCAGTCCTTGGCGAAGTCCTATGCAGTTCCAGGCTCCGATGTCA GGATACCGAGGACCTCCTCCTGGCGCTCCACCACCATGGAGCCCACATTCTGGCGTTCCA CCACCATGGAATCCACATTCTGCTCCTCCATCTCAAGGCCTTTATCCACATCCACCTAGC TATGGACCCAGAAACTATAATCCTGGCCAAGGAGGCGGCCGAATGAACTATGGACCCAGA GGTAGACCAGACTCACCTTATGGAAGAGGGAGGGGCCAAAACAACTACAACAACCCAGGA TCAAGGGGAAGAGGGGGAAGGGATGGCTCAGGCACTCAAAACTATTCTGGATGGCAAGAT GGAAGAGTTCGCTACCACAAAAGCATGACTGATGACCCATGGCGGGATTTGCAACCTATT GTTGGCAACATAATGATACCCAGGGATGGATCCAAGTCCTGGCTTCCAGAATCACTGCGT GCAAAGAAGGATACATCTGACCGAGGCCAAGTCAAGCCTCCATCAGGATTGAGCTTGGCA GAGTACCTTGACTTGTCTTTCAACGAGGCTTCTAATGATACGTAGACCTTTGTATTGTTA AAAATGCTGTTGTTCTCGGTAGAGTTTTGTGCCCGCTGTGTTTCACTTTGAACGTGGTTC GTTTCTCATTTTCATTGCTTCCATTGGCCTAGGTAGTACACACTTACATCAGGGGTTACA ATGTCCTGGTGTCCATTTACTAGCACTGTTTATGAAATTACCCTCATGATGTGGTAACAT TTTTACGGTTATTTGAGGCACTAATACATGTAGGAAAAATGATAAACGGTAGTATAATTT ATAATTTTATGGCTTGAGGTGTGG



consensusID : consensus_4176#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 571
fasta sequence
                              [GGACGAGACAAGGGGAAGAGGGGGAAGGGATGGGGGAAGGGATGGCTCAGGCACTCAAAACTATTCTGGATGGCAAGATGGAAGAGTTCGCTACCACAAAAGCATGACTGATGACCCATGGCGGGATTTGCAACCTATTGTTGGCAACATAATGATACCCAGGGATGGATCCAAGTCCTGGCTTCCAGAATCACTGCGTGCAAAGAAGGATACATCTGACCGAGGCCAAGTCAAGCCACCATCAGGATTGAGCTTGGCAGAGTACCTTGACTTGTCGTTCAACGAGGCTTCTAATGATACGTAGACCTTTGTATTGTTAAAAATGCTGTTGTTCTCGGTAGAGTTTTGTGCCCGCTGTGTTTCACTTTGAACGTGGTAATTTTCTCATTTTCATTGCTTCCATTGGCCTAGGTAGTATAGACGTACGTCAGGAGTTACAGTGCCCTGGTGTCTATTTGCTAGTACCGTTTATGAAATTCTCCTCATGTTGTGGTAACATTTTTACGGTTATTTGAGGCACTAATACATGGAGGAAAAATGATAAACGGTAGTATAATTTTAAAAAAAAAAA]

[-] EMBL CA763350             [GGACGAGACAAGGGGAAGAGGGGGAAGGGATGGGGGAAGGGATGGCTCAGGCACTCAAAACTATTCTGGATGGCAAGATGGAAGAGTTCGCTACCACAAAAGCATGACTGATGACCCATGGCGGGATTTGCAACCTATTGTTGGCAACATAATGATACCCAGGGATGGATCCAAGTCCTGGCTTCCAGAATCACTGCGTGCAAAGAAGGATACATCTGACCGAGGCCAAGTCAAGCCACCATCAGGATTGAGCTTGGCAGAGTACCTTGACTTGTCGTTCAACGAGGCTTCTAATGATACGTAGACCTTTGTATTGTTAAAAATGCTGTTGTTCTCGGTAGAGTTTTGTGCCCGCTGTGTTTCACTTTGAACGTGGTAATTTTCTCATTTTCATTGCTTCCATTGGCCTAGGTAGTATAGACGTACGTCAGGAGTTACAGTGCCCTGGTGTCTATTTGCTAGTACCGTTTATGAAATTCTCCTCATGTTGTGGTAACATTTTTACGGTTATTTGAGGCACTAATACATGGAGGAAAAATGATAAACGGTAGTATAATTTTAAAAAAAAAAA]


>consensus_4176#1 GGACGAGACAAGGGGAAGAGGGGGAAGGGATGGGGGAAGGGATGGCTCAGGCACTCAAAA CTATTCTGGATGGCAAGATGGAAGAGTTCGCTACCACAAAAGCATGACTGATGACCCATG GCGGGATTTGCAACCTATTGTTGGCAACATAATGATACCCAGGGATGGATCCAAGTCCTG GCTTCCAGAATCACTGCGTGCAAAGAAGGATACATCTGACCGAGGCCAAGTCAAGCCACC ATCAGGATTGAGCTTGGCAGAGTACCTTGACTTGTCGTTCAACGAGGCTTCTAATGATAC GTAGACCTTTGTATTGTTAAAAATGCTGTTGTTCTCGGTAGAGTTTTGTGCCCGCTGTGT TTCACTTTGAACGTGGTAATTTTCTCATTTTCATTGCTTCCATTGGCCTAGGTAGTATAG ACGTACGTCAGGAGTTACAGTGCCCTGGTGTCTATTTGCTAGTACCGTTTATGAAATTCT CCTCATGTTGTGGTAACATTTTTACGGTTATTTGAGGCACTAATACATGGAGGAAAAATG ATAAACGGTAGTATAATTTTAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4176#0      ACGAGTTCGCCGTCGGATTCTCGCAAAAGCGGCGGCGCCGCCGACGAGGACGAGGGACAG 60
consensus_4176#1      ------------------------------------------------------------
                                                                                  

consensus_4176#0      GGGGAGCAGTAGCAGGCGAGGCGCGGCGCGGCGCGGGTTTAGATGGAGGGCGGCGAGCAG 120
consensus_4176#1      ------------------------------------------------------------
                                                                                  

consensus_4176#0      GAGGAGTCGTCGGCGCAGCGGCGGGAGCGCCTCCTCGCGCTCCGCTCCTCCGCCGCAGCA 180
consensus_4176#1      ------------------------------------------------------------
                                                                                  

consensus_4176#0      GCCCCCTCGCCGTCGGCCGCACCGCATCCGCCGCCACCTGCGGCGGACGCGTGGGATCTC 240
consensus_4176#1      ------------------------------------------------------------
                                                                                  

consensus_4176#0      CCGGTGCGCGACCTGATGGACGCCTCCGCCACCACCACCGCCGCGGCCCCACGCCCGCCT 300
consensus_4176#1      ------------------------------------------------------------
                                                                                  

consensus_4176#0      CCGCGGTTCGACTACTACACCAACCCCGCCGCCGCCTTCGCCTCCTCGTCGGCTGCTTCC 360
consensus_4176#1      ------------------------------------------------------------
                                                                                  

consensus_4176#0      CACAAGCGCAAGGTCGCGGAGCCCCCGCCTCCGGGATCAGGGAACTATGGAAGCGGTTAT 420
consensus_4176#1      ------------------------------------------------------------
                                                                                  

consensus_4176#0      CCTCCTCCACACCAGCACCATATGGCCCCACCACCAATTCACACTCCATCCCGATTGTCC 480
consensus_4176#1      ------------------------------------------------------------
                                                                                  

consensus_4176#0      CATGATTCACCAGGGGGCAGTCCTTGGCGAAGTCCTATGCAGTTCCAGGCTCCGATGTCA 540
consensus_4176#1      ------------------------------------------------------------
                                                                                  

consensus_4176#0      GGATACCGAGGACCTCCTCCTGGCGCTCCACCACCATGGAGCCCACATTCTGGCGTTCCA 600
consensus_4176#1      ------------------------------------------------------------
                                                                                  

consensus_4176#0      CCACCATGGAATCCACATTCTGCTCCTCCATCTCAAGGCCTTTATCCACATCCACCTAGC 660
consensus_4176#1      ------------------------------------------------------------
                                                                                  

consensus_4176#0      TATGGACCCAGAAACTATAATCCTGGCCAAGGAGGCGGCCGAATGAACTATGGACCCAGA 720
consensus_4176#1      ------------------------------------------------------------
                                                                                  

consensus_4176#0      GGTAGACCAGACTCACCTTATGGAAGAGGGAGGGGCCAAAACAACTACAACAACCCAGGA 780
consensus_4176#1      -----------------------------------------GGACGAGACAAGGGGAAGA 19
                                                                 ** * *  *    * **

consensus_4176#0      TCAAGGGGAAGAGGGGGAAGGGATGGCTCAGGCACTCAAAACTATTCTGGATGGCAAGAT 840
consensus_4176#1      GGGGGAAGGGATGGGGGAAGGGATGGCTCAGGCACTCAAAACTATTCTGGATGGCAAGAT 79
                          *  *    ************************************************

consensus_4176#0      GGAAGAGTTCGCTACCACAAAAGCATGACTGATGACCCATGGCGGGATTTGCAACCTATT 900
consensus_4176#1      GGAAGAGTTCGCTACCACAAAAGCATGACTGATGACCCATGGCGGGATTTGCAACCTATT 139
                      ************************************************************

consensus_4176#0      GTTGGCAACATAATGATACCCAGGGATGGATCCAAGTCCTGGCTTCCAGAATCACTGCGT 960
consensus_4176#1      GTTGGCAACATAATGATACCCAGGGATGGATCCAAGTCCTGGCTTCCAGAATCACTGCGT 199
                      ************************************************************

consensus_4176#0      GCAAAGAAGGATACATCTGACCGAGGCCAAGTCAAGCCTCCATCAGGATTGAGCTTGGCA 1020
consensus_4176#1      GCAAAGAAGGATACATCTGACCGAGGCCAAGTCAAGCCACCATCAGGATTGAGCTTGGCA 259
                      ************************************** *********************

consensus_4176#0      GAGTACCTTGACTTGTCTTTCAACGAGGCTTCTAATGATACGTAGACCTTTGTATTGTTA 1080
consensus_4176#1      GAGTACCTTGACTTGTCGTTCAACGAGGCTTCTAATGATACGTAGACCTTTGTATTGTTA 319
                      ***************** ******************************************

consensus_4176#0      AAAATGCTGTTGTTCTCGGTAGAGTTTTGTGCCCGCTGTGTTTCACTTTGAACGTGGTTC 1140
consensus_4176#1      AAAATGCTGTTGTTCTCGGTAGAGTTTTGTGCCCGCTGTGTTTCACTTTGAACGTGGTAA 379
                      **********************************************************  

consensus_4176#0      GTTTCTCATTTTCATTGCTTCCATTGGCCTAGGTAGTACACACTTACATCAGGGGTTACA 1200
consensus_4176#1      TTTTCTCATTTTCATTGCTTCCATTGGCCTAGGTAGTATAGACGTACGTCAGGAGTTACA 439
                       ************************************* * ** *** ***** ******

consensus_4176#0      ATGTCCTGGTGTCCATTTACTAGCACTGTTTATGAAATTACCCTCATGATGTGGTAACAT 1260
consensus_4176#1      GTGCCCTGGTGTCTATTTGCTAGTACCGTTTATGAAATTCTCCTCATGTTGTGGTAACAT 499
                       ** ********* **** **** ** ************  ******* ***********

consensus_4176#0      TTTTACGGTTATTTGAGGCACTAATACATGTAGGAAAAATGATAAACGGTAGTATAATTT 1320
consensus_4176#1      TTTTACGGTTATTTGAGGCACTAATACATGGAGGAAAAATGATAAACGGTAGTATAATTT 559
                      ****************************** *****************************

consensus_4176#0      ATAATTTTATGGCTTGAGGTGTGG 1344
consensus_4176#1      TAAAAAAAAAAA------------ 571
                        **    *               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)