These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4181#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1222 fasta sequence [CTGCCCTTGTTCTTTTCTTCTTCTCTCTCTCTGCTCTGCCTCTGTCTTGGTTTGCTTTGCTTCTTCTCGATGCCATCGATGCCTGCATGACTGCTTGCACCTAGCAACTTCCTCTTGCCAAGAACGGGCGGTCGCAGCAA--------GGCTTGTTCAGCTTGAACGCCGGCTCATCATTTCAAAGGTATAGATGGCACACGCAAACAAGAATCACATTGAGTCATTTCCACCTCCTGGGAAAAAGATAACAATCGTGTTCGTCATAGGTGGCCCTGGCAGTGGCAAAGGCACTCAATGTGCCAAAATTGTTAAGCAGTTTGGCTTTACACATCTGAGTGCTGGTGATCTCCTTCGTGAAGAAGCAAAATATGATACTGAACAAGGTACAATGATCAAGAATCTCATGAATGAAGGGAAGCTTGTGTCATCTGATCTCATCGTTAAGCTACTATTTAAGGCCATGCGAGAAAGTGGGAATGATAAGTTCCTTGTTGATGGATTTCCACGAAATGAAGAAAATCGACATGCGTATGAAAATATTATCCACATTGAGCCAGAGTTCCTGCTGTTCATTGACTGCTCAAAGGAAGAGATGGAGCGGCGCATTTTGAACCGAAACCAGGGAAGAGATGATGACAACATCGACACTATTAGGAGACGCTTTGATGTTTTTCAGCAGCAAACTCTTCCAGTTATTCAGTACTATGAGAAAAGGGGGAAACTCAGAAAGGTTGATGGTAACCGACAGGTAGATGAAGTTTTCGAAGACGTTAAGGCCATTTTTGCTCAGTTGAACAATCAGAAAATTCATGGTGGCCAGCAAGCTAGTGGTTTGAGCAGAGCACAAATGAATCCATTGAAACGTTGGTTCTTTGACTTTTTCTGCGGTTGCTTTGGGACTAAAGAAGAAGCAAGAAACTGACAGTAGAAATGAAAGTGACATGATCTCTCTGCGTGTGTGTGGTGGACTGTGGAGTACCTAGAGGCTGGTGCAGAATTTCAGAAAGAGAGAGAACAAAAAACTTGTGATGTCTTGAGTTACTACTAGTATATATGGTGATGGTGTGTTGTGCTAGTTGACTGTTTCGGTTCAATAGTCTAGTGTGACCTGTGAAGATACTGCATGTTGGCTTGTTTGGTTTGTTGATTGCAGCTTCGAGATTCATTATTATTGTTGGCTAAAAAATCTGTGTGATTTAACGTTAGTTAATAATAAAAGAGAGTGGGG] [+] EMBL AK066989 [CTGCCCTTGTTCTTTTCTTCTTCTCTCTCTCTGCTCTGCCTCTGTCTTGGTTTGCTTTGCTTCTTCTCGATGCCATCGATGCCTGCATGACTGCTTGCACCTAGCAACTTCCTCTTGCCAAGAACGGGCGGTCGCAGCAA GGCTTGTTCAGCTTGAACGCCGGCTCATCATTTCAAAGGTATAGATGGCACACGCAAACAAGAATCACATTGAGTCATTTCCACCTCCTGGGAAAAAGATAACAATCGTGTTCGTCATAGGTGGCCCTGGCAGTGGCAAAGGCACTCAATGTGCCAAAATTGTTAAGCAGTTTGGCTTTACACATCTGAGTGCTGGTGATCTCCTTCGTGAAGAAGCAAAATATGATACTGAACAAGGTACAATGATCAAGAATCTCATGAATGAAGGGAAGCTTGTGTCATCTGATCTCATCGTTAAGCTACTATTTAAGGCCATGCGAGAAAGTGGGAATGATAAGTTCCTTGTTGATGGATTTCCACGAAATGAAGAAAATCGACATGCGTATGAAAATATTATCCACATTGAGCCAGAGTTCCTGCTGTTCATTGACTGCTCAAAGGAAGAGATGGAGCGGCGCATTTTGAACCGAAACCAGGGAAGAGATGATGACAACATCGACACTATTAGGAGACGCTTTGATGTTTTTCAGCAGCAAACTCTTCCAGTTATTCAGTACTATGAGAAAAGGGGGAAACTCAGAAAGGTTGATGGTAACCGACAGGTAGATGAAGTTTTCGAAGACGTTAAGGCCATTTTTGCTCAGTTGAACAATCAGAAAATTCATGGTGGCCAGCAAGCTAGTGGTTTGAGCAGAGCACAAATGAATCCATTGAAACGTTGGTTCTTTGACTTTTTCTGCGGTTGCTTTGGGACTAAAGAAGAAGCAAGAAACTGACAGTAGAAATGAAAGTGACATGATCTCTCTGCGTGTGTGTGGTGGACTGTGGAGTACCTAGAGGCTGGTGCAGAATTTCAGAAAGAGAGAGAACAAAAAACTTGTGATGTCTTGAGTTACTACTAGTATATATGGTGATGGTGTGTTGTGCTAGTTGACTGTTTCGGTTCAATAGTCTAGTGTGACCTGTGAAGATACTGCATGTTGGCTTGTTTGGTTTGTTGATTGCAGCTTCGAGATTCATTATTATTGTTGGCTAAAAAATCTGTGTGATTTAACGTTAGTTAATAATAAAAGAGAGTGGGG] [+] EMBL CA755769 [ GCCTGCATGACTGCTTGCACCTAGCAACTTCCTCTTGCCAAGAACGGGCGGTCGCAGCAATGTGACATGGCTTGTTCAGCTTGAACGCCGGCTCATCATTTCAAAGGTATAGATGGCACACGCAAACAAGAATCACATTGAGTCATTTCCACCTCCTGGGAAAAAGATAACAATCGTGTTCGTCATAGGTGGCCCTGGCAGTGGCAAAGGCACTCAATGTGCCAAAATTGTTAAGCAGTTTGGCTTTACACATCTGAGTGCTGGTGATCTCCTTCGTGAAGAAGCAAAATATGATACTGAACAAGGTACAATGATCAAGAATCTCATGAATGAAGGGAAGCTTGTGTCATCTGATCTCATCGTTAAGCTACTATTTAAGGCCATGCGAGAAAGTGGGAATGATAAGTTCCTTGTTGATGGATTTCCACGAAATGAAGAAAATCGACATGCGTATGAAAATATTATCCACATTGAGCCAGAGTTCCTGCTGTTCATTGACTGCTCANAGGAAGAGATGGAGCGGCGCATTTTGAACCGAAACCAGGGAAGAGATGATGACAACATCGACACTATTAGGAGACGCTTTGATGTTTTTCAGCAG ] consensusID : consensus_4181#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 897 fasta sequence [AGTCATTTTGCTCTATCAATTCTACTATTTACGTGATCACACAGGCTCTCCATACAAATATGATGTGAAATTTCTGATGAATTGCCTCTTGTTCATACTCATGACTTGGGCAGTGTGACATGTGAGGCTCTCTCTCTCTCTCTGCTTGCTTCATTAATTTTGTGTTTCAGCCTTTCAGGGCTTGTTCAGCTTGAACGCCGGCTCATCATTTCAAAGGTATAGATGGCACACGCAAACAAGAATCACATTGAGTCATTTCCACCTCCTGGGAAAAAGATAACAATCGTGTTCGTCATAGGTGGCCCTGGCAGTGGCAAAGGCACTCAATGTGCCAAAATTGTTAAGCAGTTTGGCTTTACACATCTGAGTGCTGGTGATCTCCTTCGTGAAGAAGCAAAATATGATACTGAACAAGGTACAATGATCAAGAATCTCATGAATGAAGGGAAGCTTGTGTCATCTGATCTCATCGTTAAGCTACTATTTAAGGCCATGCGAGAAAGTGGGAATGATAAGTTCCTTGTTGATGGATTTCCACGAAATGAAGAGAATCGACATGCGTATGAAAATATTATCCACATTGAGCCAGAGTTCCTGCTGNTCATTGACTGCTCAAAGGAAGAGATGGAGCGGCGCATTTTGAACCGAAACCAGGGAAGAGATGATGACAACATCGACACTATTANGAGACGCTTTGATGNTTTTCAGCAGCAAACTCTTNCAGTTATTCAGTACTATGAGAAAAGGGGGAAACTCANAAAGGNTGATGGTAACCGACAGGTANATGAAGTTTTNCNAAAACGTTAANGNCATTTTTGGCTCAGTTGAACAATCANAAAAATTCATGGGNGGCCAGCAAGCCTAANGGGTTTGAGCAGAGCCCAATGAATCNTTGGA] [+] EMBL CA764457 [AGTCATTTTGCTCTATCAATTCTACTATTTACGTGATCACACAGGCTCTCCATACAAATATGATGTGAAATTTCTGATGAATTGCCTCTTGTTCATACTCATGACTTGGGCAGTGTGACATGTGAGGCTCTCTCTCTCTCTCTGCTTGCTTCATTAATTTTGTGTTTCAGCCTTTCAGGGCTTGTTCAGCTTGAACGCCGGCTCATCATTTCAAAGGTATAGATGGCACACGCAAACAAGAATCACATTGAGTCATTTCCACCTCCTGGGAAAAAGATAACAATCGTGTTCGTCATAGGTGGCCCTGGCAGTGGCAAAGGCACTCAATGTGCCAAAATTGTTAAGCAGTTTGGCTTTACACATCTGAGTGCTGGTGATCTCCTTCGTGAAGAAGCAAAATATGATACTGAACAAGGTACAATGATCAAGAATCTCATGAATGAAGGGAAGCTTGTGTCATCTGATCTCATCGTTAAGCTACTATTTAAGGCCATGCGAGAAAGTGGGAATGATAAGTTCCTTGTTGATGGATTTCCACGAAATGAAGAGAATCGACATGCGTATGAAAATATTATCCACATTGAGCCAGAGTTCCTGCTGNTCATTGACTGCTCAAAGGAAGAGATGGAGCGGCGCATTTTGAACCGAAACCAGGGAAGAGATGATGACAACATCGACACTATTANGAGACGCTTTGATGNTTTTCAGCAGCAAACTCTTNCAGTTATTCAGTACTATGAGAAAAGGGGGAAACTCANAAAGGNTGATGGTAACCGACAGGTANATGAAGTTTTNCNAAAACGTTAANGNCATTTTTGGCTCAGTTGAACAATCANAAAAATTCATGGGNGGCCAGCAAGCCTAANGGGTTTGAGCAGAGCCCAATGAATCNTTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4181#0 ---------------CTGCCCTTGTTCTTTTCTTCTTCTCTC----TCTCTGCTCTGCCT 41 consensus_4181#1 AGTCATTTTGCTCTATCAATTCTACTATTTACGTGATCACACAGGCTCTCCATACAAATA 60 * * *** * * ** * * **** * consensus_4181#0 CTGTCTTGGTTTGCT------TTGCTTCTTCTCGATGCCATCGATGCCTGCATGACTGCT 95 consensus_4181#1 TGATGTGAAATTTCTGATGAATTGCCTCTTGTTCATACTCATGACTTGGGCAGTGTGACA 120 * * ** ** **** **** * ** * ** *** * consensus_4181#0 TGCA------CCTAGCAACTTCCTCTTGC--CAAGAACGGGCGGTCGCAGC-----AAGG 142 consensus_4181#1 TGTGAGGCTCTCTCTCTCTCTCTGCTTGCTTCATTAATTTTGTGTTTCAGCCTTTCAGGG 180 ** ** * ** ***** ** ** ** **** * ** consensus_4181#0 CTTGTTCAGCTTGAACGCCGGCTCATCATTTCAAAGGTATAGATGGCACACGCAAACAAG 202 consensus_4181#1 CTTGTTCAGCTTGAACGCCGGCTCATCATTTCAAAGGTATAGATGGCACACGCAAACAAG 240 ************************************************************ consensus_4181#0 AATCACATTGAGTCATTTCCACCTCCTGGGAAAAAGATAACAATCGTGTTCGTCATAGGT 262 consensus_4181#1 AATCACATTGAGTCATTTCCACCTCCTGGGAAAAAGATAACAATCGTGTTCGTCATAGGT 300 ************************************************************ consensus_4181#0 GGCCCTGGCAGTGGCAAAGGCACTCAATGTGCCAAAATTGTTAAGCAGTTTGGCTTTACA 322 consensus_4181#1 GGCCCTGGCAGTGGCAAAGGCACTCAATGTGCCAAAATTGTTAAGCAGTTTGGCTTTACA 360 ************************************************************ consensus_4181#0 CATCTGAGTGCTGGTGATCTCCTTCGTGAAGAAGCAAAATATGATACTGAACAAGGTACA 382 consensus_4181#1 CATCTGAGTGCTGGTGATCTCCTTCGTGAAGAAGCAAAATATGATACTGAACAAGGTACA 420 ************************************************************ consensus_4181#0 ATGATCAAGAATCTCATGAATGAAGGGAAGCTTGTGTCATCTGATCTCATCGTTAAGCTA 442 consensus_4181#1 ATGATCAAGAATCTCATGAATGAAGGGAAGCTTGTGTCATCTGATCTCATCGTTAAGCTA 480 ************************************************************ consensus_4181#0 CTATTTAAGGCCATGCGAGAAAGTGGGAATGATAAGTTCCTTGTTGATGGATTTCCACGA 502 consensus_4181#1 CTATTTAAGGCCATGCGAGAAAGTGGGAATGATAAGTTCCTTGTTGATGGATTTCCACGA 540 ************************************************************ consensus_4181#0 AATGAAGAAAATCGACATGCGTATGAAAATATTATCCACATTGAGCCAGAGTTCCTGCTG 562 consensus_4181#1 AATGAAGAGAATCGACATGCGTATGAAAATATTATCCACATTGAGCCAGAGTTCCTGCTG 600 ******** *************************************************** consensus_4181#0 TTCATTGACTGCTCAAAGGAAGAGATGGAGCGGCGCATTTTGAACCGAAACCAGGGAAGA 622 consensus_4181#1 NTCATTGACTGCTCAAAGGAAGAGATGGAGCGGCGCATTTTGAACCGAAACCAGGGAAGA 660 *********************************************************** consensus_4181#0 GATGATGACAACATCGACACTATTAGGAGACGCTTTGATGTTTTTCAGCAGCAAACTCTT 682 consensus_4181#1 GATGATGACAACATCGACACTATTANGAGACGCTTTGATGNTTTTCAGCAGCAAACTCTT 720 ************************* ************** ******************* consensus_4181#0 CCAGTTATTCAGTACTATGAGAAAAGGGGGAAACTCAGAAAGGTTGATGGTAACCGACAG 742 consensus_4181#1 NCAGTTATTCAGTACTATGAGAAAAGGGGGAAACTCANAAAGGNTGATGGTAACCGACAG 780 ************************************ ***** **************** consensus_4181#0 GTAGATGAAGTTTTC-GAAGACGTTAAGGCCATTTTTG-CTCAGTTGAACAATCAGAAAA 800 consensus_4181#1 GTANATGAAGTTTTNCNAAAACGTTAANGNCATTTTTGGCTCAGTTGAACAATCANAAAA 840 *** ********** ** ******* * ******** **************** **** consensus_4181#0 -TTCATGG-TGGCCAGCAAGCT--AGTGGTTTGAGCAGAGCACAAATGAATCCATTGAAA 856 consensus_4181#1 ATTCATGGGNGGCCAGCAAGCCTAANGGGTTTGAGCAGAGCCCAA-TGAATCNTTGGA-- 897 ******* *********** * ************** *** ****** * ** consensus_4181#0 CGTTGGTTCTTTGACTTTTTCTGCGGTTGCTTTGGGACTAAAGAAGAAGCAAGAAACTGA 916 consensus_4181#1 ------------------------------------------------------------ consensus_4181#0 CAGTAGAAATGAAAGTGACATGATCTCTCTGCGTGTGTGTGGTGGACTGTGGAGTACCTA 976 consensus_4181#1 ------------------------------------------------------------ consensus_4181#0 GAGGCTGGTGCAGAATTTCAGAAAGAGAGAGAACAAAAAACTTGTGATGTCTTGAGTTAC 1036 consensus_4181#1 ------------------------------------------------------------ consensus_4181#0 TACTAGTATATATGGTGATGGTGTGTTGTGCTAGTTGACTGTTTCGGTTCAATAGTCTAG 1096 consensus_4181#1 ------------------------------------------------------------ consensus_4181#0 TGTGACCTGTGAAGATACTGCATGTTGGCTTGTTTGGTTTGTTGATTGCAGCTTCGAGAT 1156 consensus_4181#1 ------------------------------------------------------------ consensus_4181#0 TCATTATTATTGTTGGCTAAAAAATCTGTGTGATTTAACGTTAGTTAATAATAAAAGAGA 1216 consensus_4181#1 ------------------------------------------------------------ consensus_4181#0 GTGGGG 1222 consensus_4181#1 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||