Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4191 cluster # 4191       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4191#0 length = 772 sequences # 2  
consensus_4191#1 length = 386 sequences # 1  

consensusID : consensus_4191#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 772
fasta sequence
                              [GCGTTGCCCTTGCTGCGGGTGCAGAACTCCATCTGCTCCGGCGGCGGCGGCGGCGGCGGCGGCGAGGCGAGGAGAGAGAGGATGGGGCGGCGGATCCTGAACGACGCGCTGCGGACGATGGTGAACGCGGAGCGGAGGGGGAAGGCGACGGCGCTGCTGCAGCCCATCTCCGGCGTCATGGTCTCCTTCCTCAACATCATGAAGCACCGAGGGTACATTAAAAAGTTTGAGGTCATCGATCCCCATAGAGTTGGAAAAATCAATGTAGAGCTTCATGGAAGGATTAAAGATTGTAAGGCTCTTACTTATAGGCAGGATATTAGAGCCAAGGAAATAGAACAATACAGAGTTCGGATGCTTCCAACACGGCAGTGGGGCTATGTCGTGATCACAACTCCAAATGGTGTACTGGATCATGAGGAAGCAATTAAGCAGAATGTGGGCGGGCAAGTGCTTGGTTATTTTCATTGAGAAGTAACATTGTTTTCCTGTCTTGTTATGTCTGGCCTTGTTCTCCTGTGTGTTATCACTGAACTCTTTTTTTTTTTTTTTGTACTTTTGAGTGTTGTTGCTTTTGTTCATGGCCAACAGGAAATGCAATAACGCATAAAAGATACAGCTCAGAGCACTAGAAAATGCCAATTGTTAAAGAAAAAGATTGTAATCCTTCGTTGGACTGTTCTTTCTGTAGACTATTGCATCTTGATTTTGGAGTTACTCCTACATAGCTATCCTCTCGACCGGAGAAGATATGGTCCAGAGTATGACAGTT]

[+] EMBL AK121591             [GCGTTGCCCTTGCTGCGGGTGCAGAACTCCATCTGCTCCGGCGGCGGCGGCGGCGGCGGCGGCGAGGCGAGGAGAGAGAGGATGGGGCGGCGGATCCTGAACGACGCGCTGCGGACGATGGTGAACGCGGAGCGGAGGGGGAAGGCGACGGCGCTGCTGCAGCCCATCTCCGGCGTCATGGTCTCCTTCCTCAACATCATGAAGCACCGAGGGTACATTAAAAAGTTTGAGGTCATCGATCCCCATAGAGTTGGAAAAATCAATGTAGAGCTTCATGGAAGGATTAAAGATTGTAAGGCTCTTACTTATAGGCAGGATATTAGAGCCAAGGAAATAGAACAATACAGAGTTCGGATGCTTCCAACACGGCAGTGGGGCTATGTCGTGATCACAACTCCAAATGGTGTACTGGATCATGAGGAAGCAATTAAGCAGAATGTGGGCGGGCAAGTGCTTGGTTATTTTCATTGAGAAGTAACATTGTTTTCCTGTCTTGTTATGTCTGGCCTTGTTCTCCTGTGTGTTATCACTGAACTCTTTTTTTTTTTTTTTGTACTTTTGAGTGTTGTTGCTTTTGTTCATGGCCAACAGGAAATGCAATAACGCATAAAAGATACAGCTCAGAGCACTAGAAAATGCCAATTGTTAAAGAAAAAG                                                                                                                   ]
[+] EMBL AK063840             [                                                                                                                                                                                                                                                                                                                                                                        CCAACACGGCAGTGGGGCTATGTCGTGATCACAACTCCAAATGGTGTACTGGATCATGAGGAAGCAATTAAGCAGAATGTGGGCGGGCAAGTGCTTGGTTATTTTCATTGAGAAGTAACATTGTTTTCCTGTCTTGTTATGTCTGGCCTTGTTCTCCTGTGTGTTATCACTGAACTC  TTTTTTTTTTTTTGTACTTTTGAGTGTTGTTGCTTTTGTTCATGGCCAACAGGAAATGCAATAACGCATAAAAGATACAGCTCAGAGCACTAGAAAATGCCAATTGTTAAAGAAAAAGATTGTAATCCTTCGTTGGACTGTTCTTTCTGTAGACTATTGCATCTTGATTTTGGAGTTACTCCTACATAGCTATCCTCTCGACCGGAGAAGATATGGTCCAGAGTATGACAGTT]


>consensus_4191#0 GCGTTGCCCTTGCTGCGGGTGCAGAACTCCATCTGCTCCGGCGGCGGCGGCGGCGGCGGC GGCGAGGCGAGGAGAGAGAGGATGGGGCGGCGGATCCTGAACGACGCGCTGCGGACGATG GTGAACGCGGAGCGGAGGGGGAAGGCGACGGCGCTGCTGCAGCCCATCTCCGGCGTCATG GTCTCCTTCCTCAACATCATGAAGCACCGAGGGTACATTAAAAAGTTTGAGGTCATCGAT CCCCATAGAGTTGGAAAAATCAATGTAGAGCTTCATGGAAGGATTAAAGATTGTAAGGCT CTTACTTATAGGCAGGATATTAGAGCCAAGGAAATAGAACAATACAGAGTTCGGATGCTT CCAACACGGCAGTGGGGCTATGTCGTGATCACAACTCCAAATGGTGTACTGGATCATGAG GAAGCAATTAAGCAGAATGTGGGCGGGCAAGTGCTTGGTTATTTTCATTGAGAAGTAACA TTGTTTTCCTGTCTTGTTATGTCTGGCCTTGTTCTCCTGTGTGTTATCACTGAACTCTTT TTTTTTTTTTTTGTACTTTTGAGTGTTGTTGCTTTTGTTCATGGCCAACAGGAAATGCAA TAACGCATAAAAGATACAGCTCAGAGCACTAGAAAATGCCAATTGTTAAAGAAAAAGATT GTAATCCTTCGTTGGACTGTTCTTTCTGTAGACTATTGCATCTTGATTTTGGAGTTACTC CTACATAGCTATCCTCTCGACCGGAGAAGATATGGTCCAGAGTATGACAGTT



consensusID : consensus_4191#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 386
fasta sequence
                              [CAGCGTCCGCCTGGATCATGAGGAAGCCATTAACAGAATGTGGGCGGCACAGTGCTTGGTTATTTTCATTGAGAAGTAACACTTGTTTTCACTGTCTTGTTAATGTCTGGCCTTGTTGCTCCTGTGGTGGTTATGCAACTGGAACTGCTTTGTTTTGTTTGTACTTTTGAGTGTTGTTGCTTTTGTTCATGGGCCAAACAAGGAAATGCAATAACGCATAATAAAGATACAGCTCAGAGCAACTGAGAAAATGCCAAATTGTTAAAGAAAAAGATGTGGTAATGCCTTCCGTTGGGACTGGTGTGCTTTGCTGTGAGACTGATGTGCATCTTGATTTTGGAGTTACTCCTACATAGCTATCCTCTCGACCGGAGAAGATATGGTCC]

[+] EMBL BI810706             [CAGCGTCCGCCTGGATCATGAGGAAGCCATTAACAGAATGTGGGCGGCACAGTGCTTGGTTATTTTCATTGAGAAGTAACACTTGTTTTCACTGTCTTGTTAATGTCTGGCCTTGTTGCTCCTGTGGTGGTTATGCAACTGGAACTGCTTTGTTTTGTTTGTACTTTTGAGTGTTGTTGCTTTTGTTCATGGGCCAAACAAGGAAATGCAATAACGCATAATAAAGATACAGCTCAGAGCAACTGAGAAAATGCCAAATTGTTAAAGAAAAAGATGTGGTAATGCCTTCCGTTGGGACTGGTGTGCTTTGCTGTGAGACTGATGTGCATCTTGATTTTGGAGTTACTCCTACATAGCTATCCTCTCGACCGGAGAAGATATGGTCC]


>consensus_4191#1 CAGCGTCCGCCTGGATCATGAGGAAGCCATTAACAGAATGTGGGCGGCACAGTGCTTGGT TATTTTCATTGAGAAGTAACACTTGTTTTCACTGTCTTGTTAATGTCTGGCCTTGTTGCT CCTGTGGTGGTTATGCAACTGGAACTGCTTTGTTTTGTTTGTACTTTTGAGTGTTGTTGC TTTTGTTCATGGGCCAAACAAGGAAATGCAATAACGCATAATAAAGATACAGCTCAGAGC AACTGAGAAAATGCCAAATTGTTAAAGAAAAAGATGTGGTAATGCCTTCCGTTGGGACTG GTGTGCTTTGCTGTGAGACTGATGTGCATCTTGATTTTGGAGTTACTCCTACATAGCTAT CCTCTCGACCGGAGAAGATATGGTCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4191#0      GCGTTGCCCTTGCTGCGGGTGCAGAACTCCATCTGCTCCGGCGGCGGCGGCGGCGGCGGC 60
consensus_4191#1      ------------------------------------------------------------
                                                                                  

consensus_4191#0      GGCGAGGCGAGGAGAGAGAGGATGGGGCGGCGGATCCTGAACGACGCGCTGCGGACGATG 120
consensus_4191#1      ------------------------------------------------------------
                                                                                  

consensus_4191#0      GTGAACGCGGAGCGGAGGGGGAAGGCGACGGCGCTGCTGCAGCCCATCTCCGGCGTCATG 180
consensus_4191#1      ------------------------------------------------------------
                                                                                  

consensus_4191#0      GTCTCCTTCCTCAACATCATGAAGCACCGAGGGTACATTAAAAAGTTTGAGGTCATCGAT 240
consensus_4191#1      ------------------------------------------------------------
                                                                                  

consensus_4191#0      CCCCATAGAGTTGGAAAAATCAATGTAGAGCTTCATGGAAGGATTAAAGATTGTAAGGCT 300
consensus_4191#1      ------------------------------------------------------------
                                                                                  

consensus_4191#0      CTTACTTATAGGCAGGATATTAGAGCCAAGGAAATAGAACAATACAGAGTTCGGATGCTT 360
consensus_4191#1      ------------------------------------------------------------
                                                                                  

consensus_4191#0      CCAACACGGCAGTGGGGCTATGTCGTGATCACAACTCCAAATGGTGTACTGGATCATGAG 420
consensus_4191#1      --------------------------------------CAGCGTCCGCCTGGATCATGAG 22
                                                             *  *     ************

consensus_4191#0      GAAGCAATTAAGCAGAATGTGGGCGGGCAAGTGCTTGGTTATTTTCATTGAGAAGTAACA 480
consensus_4191#1      GAAGCCATTAA-CAGAATGTGGGCGGCACAGTGCTTGGTTATTTTCATTGAGAAGTAACA 81
                      ***** ***** **************   *******************************

consensus_4191#0      -TTGTTTTC-CTGTCTTGTTA-TGTCTGGCCTTGTT-CTCCTGTGTGTTATCACTGAACT 536
consensus_4191#1      CTTGTTTTCACTGTCTTGTTAATGTCTGGCCTTGTTGCTCCTGTG-GTGGTTATGCAACT 140
                       ******** *********** ************** ******** **  * *   ****

consensus_4191#0      ----CTTTTTTTTTTTTTTTGTACTTTTGAGTGTTGTTGCTTTTGTTCATGGCC--AACA 590
consensus_4191#1      GGAACTGCTTTGTTTTGTTTGTACTTTTGAGTGTTGTTGCTTTTGTTCATGGGCCAAACA 200
                          **  *** **** *********************************** *  ****

consensus_4191#0      -GGAAATGCAATAACGCATAA--AAGATACAGCTCAGAGCACT--AGAAAATGCCAA-TT 644
consensus_4191#1      AGGAAATGCAATAACGCATAATAAAGATACAGCTCAGAGCAACTGAGAAAATGCCAAATT 260
                       ********************  ******************    ************ **

consensus_4191#0      GTTAAAGAAAAAGATT--GTAAT--CCTTCGTTGG-ACTGTT----CTTTCTGT-AGACT 694
consensus_4191#1      GTTAAAGAAAAAGATGTGGTAATGCCTTCCGTTGGGACTGGTGTGCTTTGCTGTGAGACT 320
                      ***************   *****  * * ****** **** *     ** **** *****

consensus_4191#0      ATTG--CATCTTGATTTTGGAGTTACTCCTACATAGCTATCCTCTCGACCGGAGAAGATA 752
consensus_4191#1      GATGTGCATCTTGATTTTGGAGTTACTCCTACATAGCTATCCTCTCGACCGGAGAAGATA 380
                        **  ******************************************************

consensus_4191#0      TGGTCCAGAGTATGACAGTT 772
consensus_4191#1      TGGTCC-------------- 386
                      ******              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)