These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4191#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 772 fasta sequence [GCGTTGCCCTTGCTGCGGGTGCAGAACTCCATCTGCTCCGGCGGCGGCGGCGGCGGCGGCGGCGAGGCGAGGAGAGAGAGGATGGGGCGGCGGATCCTGAACGACGCGCTGCGGACGATGGTGAACGCGGAGCGGAGGGGGAAGGCGACGGCGCTGCTGCAGCCCATCTCCGGCGTCATGGTCTCCTTCCTCAACATCATGAAGCACCGAGGGTACATTAAAAAGTTTGAGGTCATCGATCCCCATAGAGTTGGAAAAATCAATGTAGAGCTTCATGGAAGGATTAAAGATTGTAAGGCTCTTACTTATAGGCAGGATATTAGAGCCAAGGAAATAGAACAATACAGAGTTCGGATGCTTCCAACACGGCAGTGGGGCTATGTCGTGATCACAACTCCAAATGGTGTACTGGATCATGAGGAAGCAATTAAGCAGAATGTGGGCGGGCAAGTGCTTGGTTATTTTCATTGAGAAGTAACATTGTTTTCCTGTCTTGTTATGTCTGGCCTTGTTCTCCTGTGTGTTATCACTGAACTCTTTTTTTTTTTTTTTGTACTTTTGAGTGTTGTTGCTTTTGTTCATGGCCAACAGGAAATGCAATAACGCATAAAAGATACAGCTCAGAGCACTAGAAAATGCCAATTGTTAAAGAAAAAGATTGTAATCCTTCGTTGGACTGTTCTTTCTGTAGACTATTGCATCTTGATTTTGGAGTTACTCCTACATAGCTATCCTCTCGACCGGAGAAGATATGGTCCAGAGTATGACAGTT] [+] EMBL AK121591 [GCGTTGCCCTTGCTGCGGGTGCAGAACTCCATCTGCTCCGGCGGCGGCGGCGGCGGCGGCGGCGAGGCGAGGAGAGAGAGGATGGGGCGGCGGATCCTGAACGACGCGCTGCGGACGATGGTGAACGCGGAGCGGAGGGGGAAGGCGACGGCGCTGCTGCAGCCCATCTCCGGCGTCATGGTCTCCTTCCTCAACATCATGAAGCACCGAGGGTACATTAAAAAGTTTGAGGTCATCGATCCCCATAGAGTTGGAAAAATCAATGTAGAGCTTCATGGAAGGATTAAAGATTGTAAGGCTCTTACTTATAGGCAGGATATTAGAGCCAAGGAAATAGAACAATACAGAGTTCGGATGCTTCCAACACGGCAGTGGGGCTATGTCGTGATCACAACTCCAAATGGTGTACTGGATCATGAGGAAGCAATTAAGCAGAATGTGGGCGGGCAAGTGCTTGGTTATTTTCATTGAGAAGTAACATTGTTTTCCTGTCTTGTTATGTCTGGCCTTGTTCTCCTGTGTGTTATCACTGAACTCTTTTTTTTTTTTTTTGTACTTTTGAGTGTTGTTGCTTTTGTTCATGGCCAACAGGAAATGCAATAACGCATAAAAGATACAGCTCAGAGCACTAGAAAATGCCAATTGTTAAAGAAAAAG ] [+] EMBL AK063840 [ CCAACACGGCAGTGGGGCTATGTCGTGATCACAACTCCAAATGGTGTACTGGATCATGAGGAAGCAATTAAGCAGAATGTGGGCGGGCAAGTGCTTGGTTATTTTCATTGAGAAGTAACATTGTTTTCCTGTCTTGTTATGTCTGGCCTTGTTCTCCTGTGTGTTATCACTGAACTC TTTTTTTTTTTTTGTACTTTTGAGTGTTGTTGCTTTTGTTCATGGCCAACAGGAAATGCAATAACGCATAAAAGATACAGCTCAGAGCACTAGAAAATGCCAATTGTTAAAGAAAAAGATTGTAATCCTTCGTTGGACTGTTCTTTCTGTAGACTATTGCATCTTGATTTTGGAGTTACTCCTACATAGCTATCCTCTCGACCGGAGAAGATATGGTCCAGAGTATGACAGTT] consensusID : consensus_4191#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 386 fasta sequence [CAGCGTCCGCCTGGATCATGAGGAAGCCATTAACAGAATGTGGGCGGCACAGTGCTTGGTTATTTTCATTGAGAAGTAACACTTGTTTTCACTGTCTTGTTAATGTCTGGCCTTGTTGCTCCTGTGGTGGTTATGCAACTGGAACTGCTTTGTTTTGTTTGTACTTTTGAGTGTTGTTGCTTTTGTTCATGGGCCAAACAAGGAAATGCAATAACGCATAATAAAGATACAGCTCAGAGCAACTGAGAAAATGCCAAATTGTTAAAGAAAAAGATGTGGTAATGCCTTCCGTTGGGACTGGTGTGCTTTGCTGTGAGACTGATGTGCATCTTGATTTTGGAGTTACTCCTACATAGCTATCCTCTCGACCGGAGAAGATATGGTCC] [+] EMBL BI810706 [CAGCGTCCGCCTGGATCATGAGGAAGCCATTAACAGAATGTGGGCGGCACAGTGCTTGGTTATTTTCATTGAGAAGTAACACTTGTTTTCACTGTCTTGTTAATGTCTGGCCTTGTTGCTCCTGTGGTGGTTATGCAACTGGAACTGCTTTGTTTTGTTTGTACTTTTGAGTGTTGTTGCTTTTGTTCATGGGCCAAACAAGGAAATGCAATAACGCATAATAAAGATACAGCTCAGAGCAACTGAGAAAATGCCAAATTGTTAAAGAAAAAGATGTGGTAATGCCTTCCGTTGGGACTGGTGTGCTTTGCTGTGAGACTGATGTGCATCTTGATTTTGGAGTTACTCCTACATAGCTATCCTCTCGACCGGAGAAGATATGGTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4191#0 GCGTTGCCCTTGCTGCGGGTGCAGAACTCCATCTGCTCCGGCGGCGGCGGCGGCGGCGGC 60 consensus_4191#1 ------------------------------------------------------------ consensus_4191#0 GGCGAGGCGAGGAGAGAGAGGATGGGGCGGCGGATCCTGAACGACGCGCTGCGGACGATG 120 consensus_4191#1 ------------------------------------------------------------ consensus_4191#0 GTGAACGCGGAGCGGAGGGGGAAGGCGACGGCGCTGCTGCAGCCCATCTCCGGCGTCATG 180 consensus_4191#1 ------------------------------------------------------------ consensus_4191#0 GTCTCCTTCCTCAACATCATGAAGCACCGAGGGTACATTAAAAAGTTTGAGGTCATCGAT 240 consensus_4191#1 ------------------------------------------------------------ consensus_4191#0 CCCCATAGAGTTGGAAAAATCAATGTAGAGCTTCATGGAAGGATTAAAGATTGTAAGGCT 300 consensus_4191#1 ------------------------------------------------------------ consensus_4191#0 CTTACTTATAGGCAGGATATTAGAGCCAAGGAAATAGAACAATACAGAGTTCGGATGCTT 360 consensus_4191#1 ------------------------------------------------------------ consensus_4191#0 CCAACACGGCAGTGGGGCTATGTCGTGATCACAACTCCAAATGGTGTACTGGATCATGAG 420 consensus_4191#1 --------------------------------------CAGCGTCCGCCTGGATCATGAG 22 * * ************ consensus_4191#0 GAAGCAATTAAGCAGAATGTGGGCGGGCAAGTGCTTGGTTATTTTCATTGAGAAGTAACA 480 consensus_4191#1 GAAGCCATTAA-CAGAATGTGGGCGGCACAGTGCTTGGTTATTTTCATTGAGAAGTAACA 81 ***** ***** ************** ******************************* consensus_4191#0 -TTGTTTTC-CTGTCTTGTTA-TGTCTGGCCTTGTT-CTCCTGTGTGTTATCACTGAACT 536 consensus_4191#1 CTTGTTTTCACTGTCTTGTTAATGTCTGGCCTTGTTGCTCCTGTG-GTGGTTATGCAACT 140 ******** *********** ************** ******** ** * * **** consensus_4191#0 ----CTTTTTTTTTTTTTTTGTACTTTTGAGTGTTGTTGCTTTTGTTCATGGCC--AACA 590 consensus_4191#1 GGAACTGCTTTGTTTTGTTTGTACTTTTGAGTGTTGTTGCTTTTGTTCATGGGCCAAACA 200 ** *** **** *********************************** * **** consensus_4191#0 -GGAAATGCAATAACGCATAA--AAGATACAGCTCAGAGCACT--AGAAAATGCCAA-TT 644 consensus_4191#1 AGGAAATGCAATAACGCATAATAAAGATACAGCTCAGAGCAACTGAGAAAATGCCAAATT 260 ******************** ****************** ************ ** consensus_4191#0 GTTAAAGAAAAAGATT--GTAAT--CCTTCGTTGG-ACTGTT----CTTTCTGT-AGACT 694 consensus_4191#1 GTTAAAGAAAAAGATGTGGTAATGCCTTCCGTTGGGACTGGTGTGCTTTGCTGTGAGACT 320 *************** ***** * * ****** **** * ** **** ***** consensus_4191#0 ATTG--CATCTTGATTTTGGAGTTACTCCTACATAGCTATCCTCTCGACCGGAGAAGATA 752 consensus_4191#1 GATGTGCATCTTGATTTTGGAGTTACTCCTACATAGCTATCCTCTCGACCGGAGAAGATA 380 ** ****************************************************** consensus_4191#0 TGGTCCAGAGTATGACAGTT 772 consensus_4191#1 TGGTCC-------------- 386 ****** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||