Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4192 cluster # 4192       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4192#0 length = 1411 sequences # 3  

consensusID : consensus_4192#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1411
fasta sequence
                              [GTCTGTACCTTTTACATGCAACCACACAACTCAGCTACAATACCATCAAGATGGCTATGATTTCCCAAGCATTTTTTCTCGCTATCATCTTCTTCATTCTTGTGCAGTTGCAAGCTTCTCCATCTCCTGCAATCCAAGCCTTGGTAGCTCCGATCACCAAGGACACCAAGACTGGGCTCCACACGCTCTCCATCTCCAACAAGAACTACCTGCTTGACCTCTCCGGACAGCTACTGTGGTCACCGTGCTCACCCTCCCACCCCACCGTCCCGTGCTCCTCCGGCGAGTGCGCCGCCGCGTCGGGGGCGCACAAGTCCTGCAACAACGGAGGACGCGCGTGCACCGCCCGCCCGACGAATCCGGTGACGGGCGAACGCGCCGTCGGCGACCTCACGCTCGCTGACATCGTCGCCAACGCCACCGACGGCAAGACGCTGACCTCCGAGGTCACCGTCCGGGGCGTCGTCTCGTCATGCGCGCCGGGCAGCCTCCTCAGGTCGTTACCGGCCATGGCGGCCGGCGACGCGGGCCTCGGCCGTGGCGGGGTGAGCCTGCCGACCCAGCTCTACTCGAAGCTGTCGCTTAAGCGGCAGTTCGCCGTCTGCCTGCCGAGCACGGCGGCCGCGCCCGGCGTCGCGTTCTTCGGCGGCGGGCCGTACAACCTGATGCCGCCGACGCTGTTCGACGCGAGCACCGTCCTCTCCTACACCGACCTGGCCCGGAGCCC-GACGAACCCCTCG-GCGTACAGCATCAAGCTCCGGGGCATCGCCATGAACCAA-GAGGCGGTCCACCTCCCTCCCGGCGCGCTCAGCCGCGGCGGCGGCGTGACGCTCGACACGGCCGCGCCGTACACCGTCCTGCGGCGCGACGTGTACCGCCCGTTCGTCGCC-GCGTTCGCCAAGGCGACGGCGAGGATACCGCGCATGCCGAGCGTGGCCCCGTTCGAGCTCTGCTTCAAC-AGCAGCGCGCTGGGG-TTCACCAGGGTCGGCTACGCGG--TGGCG--CCGA-TCGA--CCTCGTGACCTCCGGCGGCCGGAACTGGACGGTGTTCGGGTCGAACTCGCTGGCGCAGGTGGCGGGCGACACGGCGTGCTTGGCGTTCGTCGACGGCGGGAGGGCGGCGCGGAGCGCGGTGACCGTGGGCGCGTTCCAGATGGAGAACAACTTTTTGCTGTTCGACGAGGCCGCTTCCAGGCTAGGGTTCAGTGGCACCCTCTTCTTCATCAGGACTACCTGTGGCAACTTCAACTTCGCAAGAAACTAAAATGGGCTCACCGTTTGCCACTATAATTCAAATTTCAAAATAAGGATATAATTCTCGCTTTTTTTGTTGTCAACTTGTCGTGACCATTTGTAACTTTGAATAAGAGCTTGTATTGGTGAGACATTGGTCGCTTGAACTAAGATACAAGCATT]

[+] EMBL AK121597             [GTCTGTACCTTTTACATGCAACCACACAACTCAGCTACAATACCATCAAGATGGCTATGATTTCCCAAGCATTTTTTCTCGCTATCATCTTCTTCATTCTTGTGCAGTTGCAAGCTTCTCCATCTCCTGCAATCCAAGCCTTGGTAGCTCCGATCACCAAGGACACCAAGACTGGGCTCCACACGCTCTCCATCTCCAACAAGAACTACCTGCTTGACCTCTCCGGACAGCTACTGTGGTCACCGTGCTCACCCTCCCACCCCACCGTCCCGTGCTCCTCCGGCGAGTGCGCCGCCGCGTCGGGGGCGCACAAGTCCTGCAACAACGGAGGACGCGCGTGCACCGCCCGCCCGACGAATCCGGTGACGGGCGAACGCGCCGTCGGCGACCTCACGCTCGCTGACATCGTCGCCAACGCCACCGACGGCAAGACGCTGACCTCCGAGGTCACCGTCCGGGGCGTCGTCTCGTCATGCGCGCCGGGCAGCCTCCTCAGGTCGTTACCGGCCATGGCGGCCGGCGACGCGGGCCTCGGCCGTGGCGGGGTGAGCCTGCCGACCCAGCTCTACTCGAAGCTGTCGCTTAAGCGGCAGTTCGCCGTCTGCCTGCCGAGCACGGCGGCCGCGCCCGGCGTCGCGTTCTTCGGCGGCGGGCCGTACAACCTGATGCCGCCGACGCTGTTCGACGCGAGCACCGTCCTCTCCTACACCGACCTGGCCCGGAGCCC GACGAACCCCTCG GCGTACAGCATCAAGCTCCGGGGCATCGCCATGAACCAA GAGGCGGTCCACCTCCCTCCCGGCGCGCTCAGCCGCGGCGGCGGCGTGACGCTCGACACGGCCGCGCCGTACACCGTCCTGCGGCGCGACGTGTACCGCCCGTTCGTCGCC GCGTTCGCCAAGGCGACGGCGAGGATAACGCGCATGCCGAGCGTGGCCCCGTTCGAGCTCTGCTTCAAC AGCAGCGCGCTGGGG TTCACCAGGGTCGGCTACGCGG  TGGCG  CCGA TCGA  CCTCGTGACGTCCGGCGGCCGGAACTGGACGGTGTTCGGGTCGAACTCGCTGGCGCAGGTGGCGGGCGACACGGCGTGCTTGGCGTTCGTCGACGGCGGGAGGGCGGCGCGGAGCGCGGTGACCGTGGGCGCGTTCCAGATGGAGAACAACTTTTTGCTGTTCGACGAGGCCGCTTCCAGGCTAGGGTTCAGTGGCACCCTCTTCTTCATCAGGACTACCTGTGGCAACTTCAACTTCGCAAGAAACTAAAATGGGCTCACCGTTTGCCACTATAATTCAAATTTCAAAATAAGGATATAATTCTCGCTTTTTTTGTTGTCAACTTGTCGTGACCATTTGTAACTTTGAATAAGAGCTTGTATTGGTGAGACATTGGTCGCTTGAACTAAGATACAAGCATT]
[+] EMBL CB966000             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  atagcttGCGG TGCGCCCGGAGTTGCGTTCTTCGGCGGCGGG CGTACAACCTGATGCCGCCGACGCTGTTCGACGCGAGCACCGTCCTCTCCTACACCGACCTGGCCCGGAGCCCTGACGAACCCCTCGTGCGTACAGCATCAAGCTCCGGGGCATCGCCATGAACCAATGAGGCGGTCCACCTCCCTCCCGGCGCGCTCAGCCGCGGCGGCGGCGTGACGCTCGACACGGCCGCGCCGTACACCGTCCTGCGGCGCGACGTGTACCGCCCGTTCGTCGCCTGCGTTCGCCAAGGCGACGGCGAGGATACCGCGCATGCCGAGCGTGGACCCGTTCGAGCTCTGCTTCAACAAGCAGCGCGCTGGGGCTTCACCAGGGTCGGCCACCCCGCAAGGCGCCCCGACTCGACCCCTCCCGACCCCCGccccccc                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB966827             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CGCG TCTTCGGCGGCGGGCCGTACAACCTGATGCCGCCGACGCTGTTCGACGCGAGCACCGTCCTCTCCTACACCGACCTGGCCCGGAGCCC GACGAACCCCTCG GCGTACAGCATCAAGCTCCGGGGCATCGCCATGAACCAA GAGGCGGTCCACCTCCCTCCCGGCGCGCTCAGCCGCGGCGGCGGCGTGACGCTCGACACGGCCGCGCCGTACACCGTCCTGCGGCGCGACGTGTACCGCCCGTTCGTCGCC GCGTTCGCCAAGGCGACGGCGAGGATACCGCGCATGCCGAGCGTGGCCCCGTTCGAGCTCTGCTTCAAC AGCAGCGCGCTGGGG TTCACCAGGGTCGGCTACGCGG  TGGCG  CCGA TCGA  CCTCGTGACCTCCGGCGGCCGGAACTGGACGGTGTTCGGGTCGAACTCGCTGGCGCAGGTGGCGAGCGACACGGCGTGCTTGGCGTTCGTCGACGGCGGGAGGGCGGCGCGGAGCGCGGTGACCGTGGGCGCGTTCCAGATGGAGAACAACTTTTTGCTGTTCGACGAGGCCGCGTCAAGGCTAGGGTTCAGTGGCACCCTCTTCTTCATCAGGACTACCTGTGGCAACTTCAACTTCGCAAGAAACTACAATGGGCTCACCGTCTGGCACTATAATTACAATTTCAAAATCAGGATAT                                                                                                       ]


>consensus_4192#0 GTCTGTACCTTTTACATGCAACCACACAACTCAGCTACAATACCATCAAGATGGCTATGA TTTCCCAAGCATTTTTTCTCGCTATCATCTTCTTCATTCTTGTGCAGTTGCAAGCTTCTC CATCTCCTGCAATCCAAGCCTTGGTAGCTCCGATCACCAAGGACACCAAGACTGGGCTCC ACACGCTCTCCATCTCCAACAAGAACTACCTGCTTGACCTCTCCGGACAGCTACTGTGGT CACCGTGCTCACCCTCCCACCCCACCGTCCCGTGCTCCTCCGGCGAGTGCGCCGCCGCGT CGGGGGCGCACAAGTCCTGCAACAACGGAGGACGCGCGTGCACCGCCCGCCCGACGAATC CGGTGACGGGCGAACGCGCCGTCGGCGACCTCACGCTCGCTGACATCGTCGCCAACGCCA CCGACGGCAAGACGCTGACCTCCGAGGTCACCGTCCGGGGCGTCGTCTCGTCATGCGCGC CGGGCAGCCTCCTCAGGTCGTTACCGGCCATGGCGGCCGGCGACGCGGGCCTCGGCCGTG GCGGGGTGAGCCTGCCGACCCAGCTCTACTCGAAGCTGTCGCTTAAGCGGCAGTTCGCCG TCTGCCTGCCGAGCACGGCGGCCGCGCCCGGCGTCGCGTTCTTCGGCGGCGGGCCGTACA ACCTGATGCCGCCGACGCTGTTCGACGCGAGCACCGTCCTCTCCTACACCGACCTGGCCC GGAGCCCGACGAACCCCTCGGCGTACAGCATCAAGCTCCGGGGCATCGCCATGAACCAAG AGGCGGTCCACCTCCCTCCCGGCGCGCTCAGCCGCGGCGGCGGCGTGACGCTCGACACGG CCGCGCCGTACACCGTCCTGCGGCGCGACGTGTACCGCCCGTTCGTCGCCGCGTTCGCCA AGGCGACGGCGAGGATACCGCGCATGCCGAGCGTGGCCCCGTTCGAGCTCTGCTTCAACA GCAGCGCGCTGGGGTTCACCAGGGTCGGCTACGCGGTGGCGCCGATCGACCTCGTGACCT CCGGCGGCCGGAACTGGACGGTGTTCGGGTCGAACTCGCTGGCGCAGGTGGCGGGCGACA CGGCGTGCTTGGCGTTCGTCGACGGCGGGAGGGCGGCGCGGAGCGCGGTGACCGTGGGCG CGTTCCAGATGGAGAACAACTTTTTGCTGTTCGACGAGGCCGCTTCCAGGCTAGGGTTCA GTGGCACCCTCTTCTTCATCAGGACTACCTGTGGCAACTTCAACTTCGCAAGAAACTAAA ATGGGCTCACCGTTTGCCACTATAATTCAAATTTCAAAATAAGGATATAATTCTCGCTTT TTTTGTTGTCAACTTGTCGTGACCATTTGTAACTTTGAATAAGAGCTTGTATTGGTGAGA CATTGGTCGCTTGAACTAAGATACAAGCATT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)