cluster # 42

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 42 cluster # 42 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_42#0 length = 612 sequences # 1

consensus_42#1 length = 442 sequences # 1

consensusID : consensus_42#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 612
fasta sequence

                              [CCAACCCCATCGTCGGCGACGGCGAGGTGGGCGACCACCGCGGCGCCGCCCTGGCGACGGCCACGGTCATCACCGTCTTCCGCGTCCGCCGCCTCGGCCCCCACCTCGCCCACGTCCACGGCCACGGCCACGCCCACCCCAACCTCCACCACCTCCACTCCATCCCCGCCNACGTCCAGATCCGCCGCCCCGAGCTCCCGGAGCACCCCCGCCCGGCGGCCCATGCCGCGGACAGCTTCCAGGAGCGCGCCAAGGACATCCTCGTGGTCGTCGTCGGGATCCTCTTCGGCGTCGGCTGCGGCGCGCTCACCGCCGCCTCCATGTACCTCGTGTGGTCCGTCCTCGCCGGCGACGCCGCCGCCGCGCCCTCCCCCTACGACGAGCTCTACGGCGACTAGGACGAGGAGGCGTCCGACTCCGAGAGCCCCAAGAAGGTCGGCTACGTCATCATCCCCGGCGTCGAGGCGCACGACGGCGGCTTGAACTAGCTCTAGGGTTTGGTCAAATCCGTGATGAACTGGGANAAATTTACCTATCTATGGCCTAATTCGTGATGTCCGTGTCATTCCCTGATGTGTGTTGTGGCGNNNNNNNNNNNNNNCAANNNNTTNN]

[+] EMBL CA754991             [CCAACCCCATCGTCGGCGACGGCGAGGTGGGCGACCACCGCGGCGCCGCCCTGGCGACGGCCACGGTCATCACCGTCTTCCGCGTCCGCCGCCTCGGCCCCCACCTCGCCCACGTCCACGGCCACGGCCACGCCCACCCCAACCTCCACCACCTCCACTCCATCCCCGCCNACGTCCAGATCCGCCGCCCCGAGCTCCCGGAGCACCCCCGCCCGGCGGCCCATGCCGCGGACAGCTTCCAGGAGCGCGCCAAGGACATCCTCGTGGTCGTCGTCGGGATCCTCTTCGGCGTCGGCTGCGGCGCGCTCACCGCCGCCTCCATGTACCTCGTGTGGTCCGTCCTCGCCGGCGACGCCGCCGCCGCGCCCTCCCCCTACGACGAGCTCTACGGCGACTAGGACGAGGAGGCGTCCGACTCCGAGAGCCCCAAGAAGGTCGGCTACGTCATCATCCCCGGCGTCGAGGCGCACGACGGCGGCTTGAACTAGCTCTAGGGTTTGGTCAAATCCGTGATGAACTGGGANAAATTTACCTATCTATGGCCTAATTCGTGATGTCCGTGTCATTCCCTGATGTGTGTTGTGGCGNNNNNNNNNNNNNNCAANNNNTTNN]




>consensus_42#0
CCAACCCCATCGTCGGCGACGGCGAGGTGGGCGACCACCGCGGCGCCGCCCTGGCGACGG
CCACGGTCATCACCGTCTTCCGCGTCCGCCGCCTCGGCCCCCACCTCGCCCACGTCCACG
GCCACGGCCACGCCCACCCCAACCTCCACCACCTCCACTCCATCCCCGCCNACGTCCAGA
TCCGCCGCCCCGAGCTCCCGGAGCACCCCCGCCCGGCGGCCCATGCCGCGGACAGCTTCC
AGGAGCGCGCCAAGGACATCCTCGTGGTCGTCGTCGGGATCCTCTTCGGCGTCGGCTGCG
GCGCGCTCACCGCCGCCTCCATGTACCTCGTGTGGTCCGTCCTCGCCGGCGACGCCGCCG
CCGCGCCCTCCCCCTACGACGAGCTCTACGGCGACTAGGACGAGGAGGCGTCCGACTCCG
AGAGCCCCAAGAAGGTCGGCTACGTCATCATCCCCGGCGTCGAGGCGCACGACGGCGGCT
TGAACTAGCTCTAGGGTTTGGTCAAATCCGTGATGAACTGGGANAAATTTACCTATCTAT
GGCCTAATTCGTGATGTCCGTGTCATTCCCTGATGTGTGTTGTGGCGNNNNNNNNNNNNN
NCAANNNNTTNN

consensusID : consensus_42#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence

                              [CGTGTGGTCCGTCNTCTGCCGGCACNCGGCGCCGCCGCGCCCATCCCCNTTACGACGAGCTCTACGGCTGACGAGGACGAGGAGGCGTCTCAGACTCCGAGAGCCCCAAGAAGGTCGGCTACGTCATCATCCCACGGCGTCGAGGCGCACGACGTCGGTATGAACTAGCTTTAGGGTTTGGTCAAATCCGTGATGAACTGGGAAAAATTTACACTATCTATGGCCTAATTCGTGATGTCCAGTGTCATTCCGTGATGTGTGTTTGTGGCGGGGGCCGAGTAGTGGGTGGTGTGCACTCCATGTGAATACGCTAGCTCTTGAATCTTTGATGCGCCACTTACTCTATGAAATGTGCCTCTTGTTTCTGATAAACTCATCGGTTGCATGCTTTGGTGCTGCTCGATGCTATGAAAAATGCTACTGAAATTGAGATNTGCTAAAN]

[+] EMBL BM037700             [CGTGTGGTCCGTCNTCTGCCGGCACNCGGCGCCGCCGCGCCCATCCCCNTTACGACGAGCTCTACGGCTGACGAGGACGAGGAGGCGTCTCAGACTCCGAGAGCCCCAAGAAGGTCGGCTACGTCATCATCCCACGGCGTCGAGGCGCACGACGTCGGTATGAACTAGCTTTAGGGTTTGGTCAAATCCGTGATGAACTGGGAAAAATTTACACTATCTATGGCCTAATTCGTGATGTCCAGTGTCATTCCGTGATGTGTGTTTGTGGCGGGGGCCGAGTAGTGGGTGGTGTGCACTCCATGTGAATACGCTAGCTCTTGAATCTTTGATGCGCCACTTACTCTATGAAATGTGCCTCTTGTTTCTGATAAACTCATCGGTTGCATGCTTTGGTGCTGCTCGATGCTATGAAAAATGCTACTGAAATTGAGATNTGCTAAAN]




>consensus_42#1
CGTGTGGTCCGTCNTCTGCCGGCACNCGGCGCCGCCGCGCCCATCCCCNTTACGACGAGC
TCTACGGCTGACGAGGACGAGGAGGCGTCTCAGACTCCGAGAGCCCCAAGAAGGTCGGCT
ACGTCATCATCCCACGGCGTCGAGGCGCACGACGTCGGTATGAACTAGCTTTAGGGTTTG
GTCAAATCCGTGATGAACTGGGAAAAATTTACACTATCTATGGCCTAATTCGTGATGTCC
AGTGTCATTCCGTGATGTGTGTTTGTGGCGGGGGCCGAGTAGTGGGTGGTGTGCACTCCA
TGTGAATACGCTAGCTCTTGAATCTTTGATGCGCCACTTACTCTATGAAATGTGCCTCTT
GTTTCTGATAAACTCATCGGTTGCATGCTTTGGTGCTGCTCGATGCTATGAAAAATGCTA
CTGAAATTGAGATNTGCTAAAN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_42#0      CCAACCCCATCGTCGGCGACGGCGAGGTGGGCGACCACCGCGGCGCCGCCCTGGCGACGG 60
consensus_42#1      ------------------------------------------------------------
                                                                                

consensus_42#0      CCACGGTCATCACCGTCTTCCGCGTCCGCCGCCTCGGCCCCCACCTCGCCCACGTCCACG 120
consensus_42#1      ------------------------------------------------------------
                                                                                

consensus_42#0      GCCACGGCCACGCCCACCCCAACCTCCACCACCTCCACTCCATCCCCGCCNACGTCCAGA 180
consensus_42#1      ------------------------------------------------------------
                                                                                

consensus_42#0      TCCGCCGCCCCGAGCTCCCGGAGCACCCCCGCCCGGCGGCCCATGCCGCGGACAGCTTCC 240
consensus_42#1      ------------------------------------------------------------
                                                                                

consensus_42#0      AGGAGCGCGCCAAGGACATCCTCGTGGTCGTCGTCGGGATCCTCTTCGGCGTCGGCTGCG 300
consensus_42#1      ------------------------------------------------------------
                                                                                

consensus_42#0      GCGCGCTCACCGCCGCCTCCATGTACCTCGTGTGGTCCGTCCTC-GCCGGCG-ACGCCGC 358
consensus_42#1      ----------------------------CGTGTGGTCCGTCNTCTGCCGGCACNCGGCGC 32
                                                ************* ** ******   ** ***

consensus_42#0      CGCCGCGCCC--TCCCCCTACGACGAGCTCTACGGC-GACTAGGACGAGGAGGCGTCC-- 413
consensus_42#1      CGCCGCGCCCATCCCCNTTACGACGAGCTCTACGGCTGACGAGGACGAGGAGGCGTCTCA 92
                    **********   ***  ****************** *** ****************   

consensus_42#0      GACTCCGAGAGCCCCAAGAAGGTCGGCTACGTCATCATCCC-CGGCGTCGAGGCGCACGA 472
consensus_42#1      GACTCCGAGAGCCCCAAGAAGGTCGGCTACGTCATCATCCCACGGCGTCGAGGCGCACGA 152
                    ***************************************** ******************

consensus_42#0      CGGCGGCTTGAACTAGCTCTAGGGTTTGGTCAAATCCGTGATGAACTGGGANAAATTTAC 532
consensus_42#1      CGTCGGTATGAACTAGCTTTAGGGTTTGGTCAAATCCGTGATGAACTGGGAAAAATTTAC 212
                    ** ***  ********** ******************************** ********

consensus_42#0      -CTATCTATGGCCTAATTCGTGATGTCC-GTGTCATTCCCTGATGTGTGTT-GTGGCGNN 589
consensus_42#1      ACTATCTATGGCCTAATTCGTGATGTCCAGTGTCATTCCGTGATGTGTGTTTGTGGCGGG 272
                     *************************** ********** *********** ******  

consensus_42#0      NNNNNNNNNNNNCAANNNNTTNN------------------------------------- 612
consensus_42#1      GGCCGAGTAGTGGGTGGTGTGCACTCCATGTGAATACGCTAGCTCTTGAATCTTTGATGC 332
                                       *                                        

consensus_42#0      ------------------------------------------------------------
consensus_42#1      GCCACTTACTCTATGAAATGTGCCTCTTGTTTCTGATAAACTCATCGGTTGCATGCTTTG 392
                                                                                

consensus_42#0      --------------------------------------------------
consensus_42#1      GTGCTGCTCGATGCTATGAAAAATGCTACTGAAATTGAGATNTGCTAAAN 442