These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_42#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence [CCAACCCCATCGTCGGCGACGGCGAGGTGGGCGACCACCGCGGCGCCGCCCTGGCGACGGCCACGGTCATCACCGTCTTCCGCGTCCGCCGCCTCGGCCCCCACCTCGCCCACGTCCACGGCCACGGCCACGCCCACCCCAACCTCCACCACCTCCACTCCATCCCCGCCNACGTCCAGATCCGCCGCCCCGAGCTCCCGGAGCACCCCCGCCCGGCGGCCCATGCCGCGGACAGCTTCCAGGAGCGCGCCAAGGACATCCTCGTGGTCGTCGTCGGGATCCTCTTCGGCGTCGGCTGCGGCGCGCTCACCGCCGCCTCCATGTACCTCGTGTGGTCCGTCCTCGCCGGCGACGCCGCCGCCGCGCCCTCCCCCTACGACGAGCTCTACGGCGACTAGGACGAGGAGGCGTCCGACTCCGAGAGCCCCAAGAAGGTCGGCTACGTCATCATCCCCGGCGTCGAGGCGCACGACGGCGGCTTGAACTAGCTCTAGGGTTTGGTCAAATCCGTGATGAACTGGGANAAATTTACCTATCTATGGCCTAATTCGTGATGTCCGTGTCATTCCCTGATGTGTGTTGTGGCGNNNNNNNNNNNNNNCAANNNNTTNN] [+] EMBL CA754991 [CCAACCCCATCGTCGGCGACGGCGAGGTGGGCGACCACCGCGGCGCCGCCCTGGCGACGGCCACGGTCATCACCGTCTTCCGCGTCCGCCGCCTCGGCCCCCACCTCGCCCACGTCCACGGCCACGGCCACGCCCACCCCAACCTCCACCACCTCCACTCCATCCCCGCCNACGTCCAGATCCGCCGCCCCGAGCTCCCGGAGCACCCCCGCCCGGCGGCCCATGCCGCGGACAGCTTCCAGGAGCGCGCCAAGGACATCCTCGTGGTCGTCGTCGGGATCCTCTTCGGCGTCGGCTGCGGCGCGCTCACCGCCGCCTCCATGTACCTCGTGTGGTCCGTCCTCGCCGGCGACGCCGCCGCCGCGCCCTCCCCCTACGACGAGCTCTACGGCGACTAGGACGAGGAGGCGTCCGACTCCGAGAGCCCCAAGAAGGTCGGCTACGTCATCATCCCCGGCGTCGAGGCGCACGACGGCGGCTTGAACTAGCTCTAGGGTTTGGTCAAATCCGTGATGAACTGGGANAAATTTACCTATCTATGGCCTAATTCGTGATGTCCGTGTCATTCCCTGATGTGTGTTGTGGCGNNNNNNNNNNNNNNCAANNNNTTNN] consensusID : consensus_42#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [CGTGTGGTCCGTCNTCTGCCGGCACNCGGCGCCGCCGCGCCCATCCCCNTTACGACGAGCTCTACGGCTGACGAGGACGAGGAGGCGTCTCAGACTCCGAGAGCCCCAAGAAGGTCGGCTACGTCATCATCCCACGGCGTCGAGGCGCACGACGTCGGTATGAACTAGCTTTAGGGTTTGGTCAAATCCGTGATGAACTGGGAAAAATTTACACTATCTATGGCCTAATTCGTGATGTCCAGTGTCATTCCGTGATGTGTGTTTGTGGCGGGGGCCGAGTAGTGGGTGGTGTGCACTCCATGTGAATACGCTAGCTCTTGAATCTTTGATGCGCCACTTACTCTATGAAATGTGCCTCTTGTTTCTGATAAACTCATCGGTTGCATGCTTTGGTGCTGCTCGATGCTATGAAAAATGCTACTGAAATTGAGATNTGCTAAAN] [+] EMBL BM037700 [CGTGTGGTCCGTCNTCTGCCGGCACNCGGCGCCGCCGCGCCCATCCCCNTTACGACGAGCTCTACGGCTGACGAGGACGAGGAGGCGTCTCAGACTCCGAGAGCCCCAAGAAGGTCGGCTACGTCATCATCCCACGGCGTCGAGGCGCACGACGTCGGTATGAACTAGCTTTAGGGTTTGGTCAAATCCGTGATGAACTGGGAAAAATTTACACTATCTATGGCCTAATTCGTGATGTCCAGTGTCATTCCGTGATGTGTGTTTGTGGCGGGGGCCGAGTAGTGGGTGGTGTGCACTCCATGTGAATACGCTAGCTCTTGAATCTTTGATGCGCCACTTACTCTATGAAATGTGCCTCTTGTTTCTGATAAACTCATCGGTTGCATGCTTTGGTGCTGCTCGATGCTATGAAAAATGCTACTGAAATTGAGATNTGCTAAAN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_42#0 CCAACCCCATCGTCGGCGACGGCGAGGTGGGCGACCACCGCGGCGCCGCCCTGGCGACGG 60 consensus_42#1 ------------------------------------------------------------ consensus_42#0 CCACGGTCATCACCGTCTTCCGCGTCCGCCGCCTCGGCCCCCACCTCGCCCACGTCCACG 120 consensus_42#1 ------------------------------------------------------------ consensus_42#0 GCCACGGCCACGCCCACCCCAACCTCCACCACCTCCACTCCATCCCCGCCNACGTCCAGA 180 consensus_42#1 ------------------------------------------------------------ consensus_42#0 TCCGCCGCCCCGAGCTCCCGGAGCACCCCCGCCCGGCGGCCCATGCCGCGGACAGCTTCC 240 consensus_42#1 ------------------------------------------------------------ consensus_42#0 AGGAGCGCGCCAAGGACATCCTCGTGGTCGTCGTCGGGATCCTCTTCGGCGTCGGCTGCG 300 consensus_42#1 ------------------------------------------------------------ consensus_42#0 GCGCGCTCACCGCCGCCTCCATGTACCTCGTGTGGTCCGTCCTC-GCCGGCG-ACGCCGC 358 consensus_42#1 ----------------------------CGTGTGGTCCGTCNTCTGCCGGCACNCGGCGC 32 ************* ** ****** ** *** consensus_42#0 CGCCGCGCCC--TCCCCCTACGACGAGCTCTACGGC-GACTAGGACGAGGAGGCGTCC-- 413 consensus_42#1 CGCCGCGCCCATCCCCNTTACGACGAGCTCTACGGCTGACGAGGACGAGGAGGCGTCTCA 92 ********** *** ****************** *** **************** consensus_42#0 GACTCCGAGAGCCCCAAGAAGGTCGGCTACGTCATCATCCC-CGGCGTCGAGGCGCACGA 472 consensus_42#1 GACTCCGAGAGCCCCAAGAAGGTCGGCTACGTCATCATCCCACGGCGTCGAGGCGCACGA 152 ***************************************** ****************** consensus_42#0 CGGCGGCTTGAACTAGCTCTAGGGTTTGGTCAAATCCGTGATGAACTGGGANAAATTTAC 532 consensus_42#1 CGTCGGTATGAACTAGCTTTAGGGTTTGGTCAAATCCGTGATGAACTGGGAAAAATTTAC 212 ** *** ********** ******************************** ******** consensus_42#0 -CTATCTATGGCCTAATTCGTGATGTCC-GTGTCATTCCCTGATGTGTGTT-GTGGCGNN 589 consensus_42#1 ACTATCTATGGCCTAATTCGTGATGTCCAGTGTCATTCCGTGATGTGTGTTTGTGGCGGG 272 *************************** ********** *********** ****** consensus_42#0 NNNNNNNNNNNNCAANNNNTTNN------------------------------------- 612 consensus_42#1 GGCCGAGTAGTGGGTGGTGTGCACTCCATGTGAATACGCTAGCTCTTGAATCTTTGATGC 332 * consensus_42#0 ------------------------------------------------------------ consensus_42#1 GCCACTTACTCTATGAAATGTGCCTCTTGTTTCTGATAAACTCATCGGTTGCATGCTTTG 392 consensus_42#0 -------------------------------------------------- consensus_42#1 GTGCTGCTCGATGCTATGAAAAATGCTACTGAAATTGAGATNTGCTAAAN 442 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||