These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4201#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2120 fasta sequence [CGTCGAACACCTTGCGCGCGCCACCGCCACCGCAACCGCCGCCGCAATGTCCGTCACCGCCGGGGTCGCCCTCGCCGTCGCCGACGCGGTGTGGGCGGAGATCAGGTCCGCGGGCCAAGCCTCCGACGAGCACCTATCCATGTGAGTAAAACCAAGCGCCCGCCGCCTCGCTCCCTCCTCTTCCTTGACCTCGGTTGCTTCGAAACAGCCTCGAGGCCTTGTTCGGCAAGAACATGGTGCGCGCCTGCAAGATCCTCGACGAGGGCGGCGTCCGCCGCGTCACCGGCGCGCCCAGCGGCCGCTCGCTCTTCCTTGTCAGCTCCCCCATCTCTCGATTCCTCCTGTTCTTCTTCGTGTCACAGCCAAAAGTGAGTGAGTGAGGATTTGCCTGACCTAGGGTTTTGCGTCTCGGCGATTCAGGTGATGGGGGAGTCGAGGAGGAAGGAGGAGTACATCTGCTTCCCAGAGCACCTCTGCACCTGCTACTCCTTCTTCTACGACATCGTCGGCCGCGGCGAGCAGCTCTGCGTAAGTGTGGCATTCTGACCTGCTGCTGTTACTGCATCTGAATCCGTACATCTTTCAATCAGGCACACTGAATTTCATGGACACAAGAAACGGATAACCTATAAACACAAAAGAAACATGGCACCATTGCAATTGCAATTATCAGCTACTACTGAAGTACTGAGTACTGAAATGCTTTTTTTTTTACTGTTTTATTTTGACTGGTTACTGAAATGCTTGTTGATCTCTTTTGCATAGTAATTGCTTTAATTTTGTTTCTTCATGGCGCTATTACAATTGCAACTATCAGCCCGCGGCTACTGAATATTGAGATGCTTGTTGATCTCTTTTTCATGGACTAGTTGCTTTTGTTTCTTCATATGGTGCTATCGCAGTTGCAATTATCAGCTCGTGACTACTGAGTACTGGAATGCTTGTTGATCTCTCTTTTCATGGAGTAATTGCTTTTGTTTCTTCATCGCGCTATTGCAATTGCAATTATCGGCTCGTGACTACTGAGTATTGAGATGTTCGTTGATCTCTTTTTCATGGACTAATTGCTTTTTTTTTCTTCAGTGCAAGCACCAGTTAGCAGCCCGACTTGCGGAGGCCGTCAGTAAGCACCAGGACATTGAGGTAACCGATGAGGAGTTGGCCCACATGCTTGCTAAACTCTGAAAGTTTCAGAATTTCGGTACTTCAGCAATGCACATGAAGTTTGGGACGAATTGATTTTTAAGAAGGATTCTAACACTAGTACCGTTGTGCAAAATGACTGATCTCAGTGCAAAGAACTGAATGATGCTTGCTATATAATATCAGCTAGATGAGTTATCCTCGAATATTAGGCGTTCTCATGTAGCTGACAGGTATAATGTGAGGCGTCATGGTTTTATCATTTTGTTGTTATGCTTGTTGTTGTATTGAATGTTAATTAGCTTCAAGAATGAGGGGAAATGTGTGATATTCTTCATTCTTGTGAAGAGATTTATAAATTTGTTCCTTTGTTACTGAGTTACCCTGTTGCCCTCCTTTTTAGTTACTATCTTATCTTATTTTAGACAAATTGTTCCTTCTCTCTAGTATTGCTTTAGTAACAGGGGAAATATGAAAAGGTATTACACAATGCCGCGTGATTATGAACTTTTAGTTTTTTCTAACAATATTACACGTATTGAGAATTCTGACTGTATGGATCTTCATGAATAGATATCATAATAACAACATACGTAGTACAAAGATATGAATGCTAAATCAGGAGATCCTAATTGTCCAAGTCTTAGGCCACAGGTTTCACAGTACTTAAGCAAGTACGTTGTACTAGTTAGTTTCAGAATTGAACATTTCATGCAAACAACATTTACGACTAGCTTAAGAATAAATACTGATGATAATAAATACTAGTACAAAGTATAAATAACATTTTGATGGCCGTCTATGATTTTATAAATCCTGGATACAATAGCGCTGCAATCCGCAGCTCTTTTATATTTGCTACTAATTGATTAGCTTCGATACAATTTAAAAACCATATAATATCCAAGCATCTAAACTAGATAGCTTTAAAGAGTATGTGACATATTTTGGTCTGTTTATTCTTATGCCTTTCTTTT] [+] EMBL AK063361 [CGTCGAACACCTTGCGCGCGCCACCGCCACCGCAACCGCCGCCGCAATGTCCGTCACCGCCGGGGTCGCCCTCGCCGTCGCCGACGCGGTGTGGGCGGAGATCAGGTCCGCGGGCCAAGCCTCCGACGAGCACCTATCCATGTGAGTAAAACCAAGCGCCCGCCGCCTCGCTCCCTCCTCTTCCTTGACCTCGGTTGCTTCGAAACAGCCTCGAGGCCTTGTTCGGCAAGAACATGGTGCGCGCCTGCAAGATCCTCGACGAGGGCGGCGTCCGCCGCGTCACCGGCGCGCCCAGCGGCCGCTCGCTCTTCCTTGTCAGCTCCCCCATCTCTCGATTCCTCCTGTTCTTCTTCGTGTCACAGCCAAAAGTGAGTGAGTGAGGATTTGCCTGACCTAGGGTTTTGCGTCTCGGCGATTCAGGTGATGGGGGAGTCGAGGAGGAAGGAGGAGTACATCTGCTTCCCAGAGCACCTCTGCACCTGCTACTCCTTCTTCTACGACATCGTCGGCCGCGGCGAGCAGCTCTGCGTAAGTGTGGCATTCTGACCTGCTGCTGTTACTGCATCTGAATCCGTACATCTTTCAATCAGGCACACTGAATTTCATGGACACAAGAAACGGATAACCTATAAACACAAAAGAAACATGGCACCATTGCAATTGCAATTATCAGCTACTACTGAAGTACTGAGTACTGAAATGCTTTTTTTTTTACTGTTTTATTTTGACTGGTTACTGAAATGCTTGTTGATCTCTTTTGCATAGTAATTGCTTTAATTTTGTTTCTTCATGGCGCTATTACAATTGCAACTATCAGCCCGCGGCTACTGAATATTGAGATGCTTGTTGATCTCTTTTTCATGGACTAGTTGCTTTTGTTTCTTCATATGGTGCTATCGCAGTTGCAATTATCAGCTCGTGACTACTGAGTACTGGAATGCTTGTTGATCTCTCTTTTCATGGAGTAATTGCTTTTGTTTCTTCATCGCGCTATTGCAATTGCAATTATCGGCTCGTGACTACTGAGTATTGAGATGTTCGTTGATCTCTTTTTCATGGACTAATTGCTTTTTTTTTCTTCAGTGCAAGCACCAGTTAGCAGCCCGACTTGCGGAGGCCGTCAGTAAGCACCAGGACATTGAGGTAACCGATGAGGAGTTGGCCCACATGCTTGCTAAACTCTGAAAGTTTCAGAATTTCGGTACTTCAGCAATGCACATGAAGTTTGGGACGAATTGATTTTTAAGAAGGATTCTAACACTAGTACCGTTGTGCAAAATGACTGATCTCAGTGCAAAGAACTGAATGATGCTTGCTATATAATATCAGCTAGATGAGTTATCCTCGAATATTAGGCGTTCTCATGTAGCTGACAGGTATAATGTGAGGCGTCATGGTTTTATCATTTTGTTGTTATGCTTGTTGTTGTATTGAATGTTAATTAGCTTCAAGAATGAGGGGAAATGTGTGATATTCTTCATTCTTGTGAAGAGATTTATAAATTTGTTCCTTTGTTACTGAGTTACCCTGTTGCCCTCCTTTTTAGTTACTATCTTATCTTATTTTAGACAAATTGTTCCTTCTCTCTAGTATTGCTTTAGTAACAGGGGAAATATGAAAAGGTATTACACAATGCCGCGTGATTATGAACTTTTAGTTTTTTCTAACAATATTACACGTATTGAGAATTCTGACTGTATGGATCTTCATGAATAGATATCATAATAACAACATACGTAGTACAAAGATATGAATGCTAAATCAGGAGATCCTAATTGTCCAAGTCTTAGGCCACAGGTTTCACAGTACTTAAGCAAGTACGTTGTACTAGTTAGTTTCAGAATTGAACATTTCATGCAAACAACATTTACGACTAGCTTAAGAATAAATACTGATGATAATAAATACTAGTACAAAGTATAAATAACATTTTGATGGCCGTCTATGATTTTATAAATCCTGGATACAATAGCGCTGCAATCCGCAGCTCTTTTATATTTGCTACTAATTGATTAGCTTCGATACAATTTAAAAACCATATAATATCCAAGCATCTAAACTAGATAGCTTTAAAGAGTATGTGACATATTTTGGTCTGTTTATTCTTATGCCTTTCTTTT] [+] EMBL AU162189 [ GCTTGCTAAACTCTGAAAGTTTCAGAATTTCGGTACTTCAGCAATGCACATGAAGTTTGGGACGAATTGATTTTTAAGAAGGATTCTAACACTAGTACCGTTGTGCAAAATGACTGATCTCAGTGCAAAGAACTGAATGATGCTTGCTATATAATATCAGCTAGATGAGTTATCCTCGAATATTAGGCGTTCTCATGTAGCTGACAGGTATAATGTGAGGCGTCATGGTTTTATCATTTTGTTGTTATGCTTGTNGTTGTATTGAATGTTAATTAGCTTCAAGAATGAGGGGAAATGTGTGATATCCTCCATCCTTGTGAAGAGATTTATAAATTTGTNCCTTTGTTACTGAGNTAaaa ] consensusID : consensus_4201#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 772 fasta sequence [CGCCGCCGCAATGTCCGTCACCGCCGGGGTCGCCCTCGCCGTCGCCGACGCGGTGTGGGCGGAGATCAGGTCCGCGGGCCAAGCCTCCGACGAGCACCTATCCATGTGAGTAAAACCAAGCGCCCGCCGCCTCGCTCCCTCCTCTTCCTTGACCTCGGTTGCTTCGAAACAGCCTCGAGGCCTTGTTCGGCAAGAACATGGTGCGCGCCTGCAAGATCCTCGACGAGGGCGGCGTCCGCCGCGTCACCGGCGCGCCCAGCGGCCGCTCGCTCTTCCTTGTGATGGGGGAGTCGAGGAGGAAGGAGGAGTACATCTGCTTCCCAGAGCACCTCTGCACCTGCTACTCCTTCTTCTACGACATCGTCGGCCGCGGCGAGCAGCTCTGCTGCAAGCACCAGTTAGCAGCCCGACTTGCGGAGGCCGTCAGTAAGCACCAGGACATTGAGGTAACCGATGAGGAGTTGGCCCACATGCTTGCTAAACTCTGAAAGTTTCAGAATTTCGGTACTTCAGCAATGCACATGAAGTTTGGGACGAATTGATTTTTAAGAAGGATTCTAACACTAGTACCGTTGTGCAAAATGACTGATCTCAGTGCAAAGAACTGAATGATGCTTGCTATATAATATCAGCTAGATGAGTTATCCTCGAATATTAGGCGTTCTCATGTAGCTGACAGGTATAATGTGAGGCGTCATGGTTTTATCATTTTGTTGTTATGCTTGTTGTTGTATTGAATGTTAATTAGCTTCAAGAATGAGGGGAAATGTGT] [+] EMBL AK121652 [CGCCGCCGCAATGTCCGTCACCGCCGGGGTCGCCCTCGCCGTCGCCGACGCGGTGTGGGCGGAGATCAGGTCCGCGGGCCAAGCCTCCGACGAGCACCTATCCATGTGAGTAAAACCAAGCGCCCGCCGCCTCGCTCCCTCCTCTTCCTTGACCTCGGTTGCTTCGAAACAGCCTCGAGGCCTTGTTCGGCAAGAACATGGTGCGCGCCTGCAAGATCCTCGACGAGGGCGGCGTCCGCCGCGTCACCGGCGCGCCCAGCGGCCGCTCGCTCTTCCTTGTGATGGGGGAGTCGAGGAGGAAGGAGGAGTACATCTGCTTCCCAGAGCACCTCTGCACCTGCTACTCCTTCTTCTACGACATCGTCGGCCGCGGCGAGCAGCTCTGCTGCAAGCACCAGTTAGCAGCCCGACTTGCGGAGGCCGTCAGTAAGCACCAGGACATTGAGGTAACCGATGAGGAGTTGGCCCACATGCTTGCTAAACTCTGAAAGTTTCAGAATTTCGGTACTTCAGCAATGCACATGAAGTTTGGGACGAATTGATTTTTAAGAAGGATTCTAACACTAGTACCGTTGTGCAAAATGACTGATCTCAGTGCAAAGAACTGAATGATGCTTGCTATATAATATCAGCTAGATGAGTTATCCTCGAATATTAGGCGTTCTCATGTAGCTGACAGGTATAATGTGAGGCGTCATGGTTTTATCATTTTGTTGTTATGCTTGTTGTTGTATTGAATGTTAATTAGCTTCAAGAATGAGGGGAAATGTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4201#0 CGTCGAACACCTTGCGCGCGCCACCGCCACCGCAACCGCCGCCGCAATGTCCGTCACCGC 60 consensus_4201#1 ------------------------------------------------------------ consensus_4201#0 CGGGGTCGCCCTCGCCGTCGCCGACGCGGTGTGGGCGGAGATCAGGTCCGCGGGCCAAGC 120 consensus_4201#1 ------------------------------------------------------------ consensus_4201#0 CTCCGACGAGCACCTATCCATGTGAGTAAAACCAAGCGCCCGCCGCCTCGCTCCCTCCTC 180 consensus_4201#1 ------------------------------------------------------------ consensus_4201#0 TTCCTTGACCTCGGTTGCTTCGAAACAGCCTCGAGGCCTTGTTCGGCAAGAACATGGTGC 240 consensus_4201#1 ------------------------------------------------------------ consensus_4201#0 GCGCCTGCAAGATCCTCGACGAGGGCGGCGTCCGCCGCGTCACCGGCGCGCCCAGCGGCC 300 consensus_4201#1 ------------------------------------------------------------ consensus_4201#0 GCTCGCTCTTCCTTGTCAGCTCCCCCATCTCTCGATTCCTCCTGTTCTTCTTCGTGTCAC 360 consensus_4201#1 ------------------------------------------------------------ consensus_4201#0 AGCCAAAAGTGAGTGAGTGAGGATTTGCCTGACCTAGGGTTTTGCGTCTCGGCGATTCAG 420 consensus_4201#1 ------------------------------------------------------------ consensus_4201#0 GTGATGGGGGAGTCGAGGAGGAAGGAGGAGTACATCTGCTTCCCAGAGCACCTCTGCACC 480 consensus_4201#1 ------------------------------------------------------------ consensus_4201#0 TGCTACTCCTTCTTCTACGACATCGTCGGCCGCGGCGAGCAGCTCTGCGTAAGTGTGGCA 540 consensus_4201#1 ------------------------------------------------------------ consensus_4201#0 TTCTGACCTGCTGCTGTTACTGCATCTGAATCCGTACATCTTTCAATCAGGCACACTGAA 600 consensus_4201#1 ------------------------------------------------------------ consensus_4201#0 TTTCATGGACACAAGAAACGGATAACCTATAAACACAAAAGAAACATGGCACCATTGCAA 660 consensus_4201#1 ------------------------------------------------------------ consensus_4201#0 TTGCAATTATCAGCTACTACTGAAGTACTGAGTACTGAAATGCTTTTTTTTTTACTGTTT 720 consensus_4201#1 ----------------------------------------------------CGCCGCCG 8 * * consensus_4201#0 TATTTTGACTGGTTACTGAAATGCTTGTTGATCTCTTTTGCATAGTAATTGCTTTAATTT 780 consensus_4201#1 CAATGTCCGTCACCGCCGGGGTCGCCCTCGCCGTCGCCGACGCGGTGTGGGCGGAGATCA 68 * * * * * * * * * ** * ** ** ** consensus_4201#0 TGTTTCTTCATGGCGCTATTACAATTGCAACTATCAGCCCGCG-GCTACTGAATATTGAG 839 consensus_4201#1 GGTCCGCGGGCCAAGCC-TCCGACGAGCACCTATCCATGTGAGTAAAACCAAGCGCCCGC 127 ** ** * * *** ***** * * ** * consensus_4201#0 ATGCTTGTTGATCTCTTTTTCATGGACT-AGTTGCTTTTGTTTCTTCATATGGTGCTATC 898 consensus_4201#1 CGCCTCGCTCCCTCCTCTTCCTTGACCTCGGTTGCTTCGAAACAGCCTCGAGGCCTTGTT 187 ** * * ** ** * ** ** ******* * ** * * consensus_4201#0 --GCAGTTGCA-ATTATCAGCTCGT--GACTACTGAGTACTGGAATGCTTGTTGATCTCT 953 consensus_4201#1 CGGCAAGAACATGGTGCGCGCCTGCAAGATCCTCGACGAGGGCGGCGTCCGCCGCGTCAC 247 *** ** * ** * ** ** * * * * * consensus_4201#0 CTTTTCATGGAGTAATTGCTTTTGTTTCTTCATCGCGCTATTGCAATTGCAATTATCGGC 1013 consensus_4201#1 CGGCGCGCCCAGCGGCCGCTCGCTCTTCCTTGTGATGGGGGAGTCGAGGAGGAAGGAGGA 307 * * ** *** *** * * * * * ** consensus_4201#0 TCGTGACTACT-----GAGTATTGAGATGTTCGTTGATCTCTTTTTCATGG----ACTAA 1064 consensus_4201#1 GTACATCTGCTTCCCAGAGCACCTCTGCACCTGCTACTCCTTCTTCTACGACATCGTCGG 367 ** ** *** * * * ** * ** * * consensus_4201#0 TTGCTTTTTTTTTCTTCAGTGCAAGCACCAGTTAGCAGCCCGACTTGCGGAGGCCGTCAG 1124 consensus_4201#1 CCGCGGCGAGCAGCTCTGCTGCAAGCACCAGTTAGCAGCCCGACTTGCGGAGGCCGTCAG 427 ** ** ***************************************** consensus_4201#0 TAAGCACCAGGACATTGAGGTAACCGATGAGGAGTTGGCCCACATGCTTGCTAAACTCTG 1184 consensus_4201#1 TAAGCACCAGGACATTGAGGTAACCGATGAGGAGTTGGCCCACATGCTTGCTAAACTCTG 487 ************************************************************ consensus_4201#0 AAAGTTTCAGAATTTCGGTACTTCAGCAATGCACATGAAGTTTGGGACGAATTGATTTTT 1244 consensus_4201#1 AAAGTTTCAGAATTTCGGTACTTCAGCAATGCACATGAAGTTTGGGACGAATTGATTTTT 547 ************************************************************ consensus_4201#0 AAGAAGGATTCTAACACTAGTACCGTTGTGCAAAATGACTGATCTCAGTGCAAAGAACTG 1304 consensus_4201#1 AAGAAGGATTCTAACACTAGTACCGTTGTGCAAAATGACTGATCTCAGTGCAAAGAACTG 607 ************************************************************ consensus_4201#0 AATGATGCTTGCTATATAATATCAGCTAGATGAGTTATCCTCGAATATTAGGCGTTCTCA 1364 consensus_4201#1 AATGATGCTTGCTATATAATATCAGCTAGATGAGTTATCCTCGAATATTAGGCGTTCTCA 667 ************************************************************ consensus_4201#0 TGTAGCTGACAGGTATAATGTGAGGCGTCATGGTTTTATCATTTTGTTGTTATGCTTGTT 1424 consensus_4201#1 TGTAGCTGACAGGTATAATGTGAGGCGTCATGGTTTTATCATTTTGTTGTTATGCTTGTT 727 ************************************************************ consensus_4201#0 GTTGTATTGAATGTTAATTAGCTTCAAGAATGAGGGGAAATGTGTGATATTCTTCATTCT 1484 consensus_4201#1 GTTGTATTGAATGTTAATTAGCTTCAAGAATGAGGGGAAATGTGT--------------- 772 ********************************************* consensus_4201#0 TGTGAAGAGATTTATAAATTTGTTCCTTTGTTACTGAGTTACCCTGTTGCCCTCCTTTTT 1544 consensus_4201#1 ------------------------------------------------------------ consensus_4201#0 AGTTACTATCTTATCTTATTTTAGACAAATTGTTCCTTCTCTCTAGTATTGCTTTAGTAA 1604 consensus_4201#1 ------------------------------------------------------------ consensus_4201#0 CAGGGGAAATATGAAAAGGTATTACACAATGCCGCGTGATTATGAACTTTTAGTTTTTTC 1664 consensus_4201#1 ------------------------------------------------------------ consensus_4201#0 TAACAATATTACACGTATTGAGAATTCTGACTGTATGGATCTTCATGAATAGATATCATA 1724 consensus_4201#1 ------------------------------------------------------------ consensus_4201#0 ATAACAACATACGTAGTACAAAGATATGAATGCTAAATCAGGAGATCCTAATTGTCCAAG 1784 consensus_4201#1 ------------------------------------------------------------ consensus_4201#0 TCTTAGGCCACAGGTTTCACAGTACTTAAGCAAGTACGTTGTACTAGTTAGTTTCAGAAT 1844 consensus_4201#1 ------------------------------------------------------------ consensus_4201#0 TGAACATTTCATGCAAACAACATTTACGACTAGCTTAAGAATAAATACTGATGATAATAA 1904 consensus_4201#1 ------------------------------------------------------------ consensus_4201#0 ATACTAGTACAAAGTATAAATAACATTTTGATGGCCGTCTATGATTTTATAAATCCTGGA 1964 consensus_4201#1 ------------------------------------------------------------ consensus_4201#0 TACAATAGCGCTGCAATCCGCAGCTCTTTTATATTTGCTACTAATTGATTAGCTTCGATA 2024 consensus_4201#1 ------------------------------------------------------------ consensus_4201#0 CAATTTAAAAACCATATAATATCCAAGCATCTAAACTAGATAGCTTTAAAGAGTATGTGA 2084 consensus_4201#1 ------------------------------------------------------------ consensus_4201#0 CATATTTTGGTCTGTTTATTCTTATGCCTTTCTTTT 2120 consensus_4201#1 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||