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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4201#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2120 fasta sequence
[CGTCGAACACCTTGCGCGCGCCACCGCCACCGCAACCGCCGCCGCAATGTCCGTCACCGCCGGGGTCGCCCTCGCCGTCGCCGACGCGGTGTGGGCGGAGATCAGGTCCGCGGGCCAAGCCTCCGACGAGCACCTATCCATGTGAGTAAAACCAAGCGCCCGCCGCCTCGCTCCCTCCTCTTCCTTGACCTCGGTTGCTTCGAAACAGCCTCGAGGCCTTGTTCGGCAAGAACATGGTGCGCGCCTGCAAGATCCTCGACGAGGGCGGCGTCCGCCGCGTCACCGGCGCGCCCAGCGGCCGCTCGCTCTTCCTTGTCAGCTCCCCCATCTCTCGATTCCTCCTGTTCTTCTTCGTGTCACAGCCAAAAGTGAGTGAGTGAGGATTTGCCTGACCTAGGGTTTTGCGTCTCGGCGATTCAGGTGATGGGGGAGTCGAGGAGGAAGGAGGAGTACATCTGCTTCCCAGAGCACCTCTGCACCTGCTACTCCTTCTTCTACGACATCGTCGGCCGCGGCGAGCAGCTCTGCGTAAGTGTGGCATTCTGACCTGCTGCTGTTACTGCATCTGAATCCGTACATCTTTCAATCAGGCACACTGAATTTCATGGACACAAGAAACGGATAACCTATAAACACAAAAGAAACATGGCACCATTGCAATTGCAATTATCAGCTACTACTGAAGTACTGAGTACTGAAATGCTTTTTTTTTTACTGTTTTATTTTGACTGGTTACTGAAATGCTTGTTGATCTCTTTTGCATAGTAATTGCTTTAATTTTGTTTCTTCATGGCGCTATTACAATTGCAACTATCAGCCCGCGGCTACTGAATATTGAGATGCTTGTTGATCTCTTTTTCATGGACTAGTTGCTTTTGTTTCTTCATATGGTGCTATCGCAGTTGCAATTATCAGCTCGTGACTACTGAGTACTGGAATGCTTGTTGATCTCTCTTTTCATGGAGTAATTGCTTTTGTTTCTTCATCGCGCTATTGCAATTGCAATTATCGGCTCGTGACTACTGAGTATTGAGATGTTCGTTGATCTCTTTTTCATGGACTAATTGCTTTTTTTTTCTTCAGTGCAAGCACCAGTTAGCAGCCCGACTTGCGGAGGCCGTCAGTAAGCACCAGGACATTGAGGTAACCGATGAGGAGTTGGCCCACATGCTTGCTAAACTCTGAAAGTTTCAGAATTTCGGTACTTCAGCAATGCACATGAAGTTTGGGACGAATTGATTTTTAAGAAGGATTCTAACACTAGTACCGTTGTGCAAAATGACTGATCTCAGTGCAAAGAACTGAATGATGCTTGCTATATAATATCAGCTAGATGAGTTATCCTCGAATATTAGGCGTTCTCATGTAGCTGACAGGTATAATGTGAGGCGTCATGGTTTTATCATTTTGTTGTTATGCTTGTTGTTGTATTGAATGTTAATTAGCTTCAAGAATGAGGGGAAATGTGTGATATTCTTCATTCTTGTGAAGAGATTTATAAATTTGTTCCTTTGTTACTGAGTTACCCTGTTGCCCTCCTTTTTAGTTACTATCTTATCTTATTTTAGACAAATTGTTCCTTCTCTCTAGTATTGCTTTAGTAACAGGGGAAATATGAAAAGGTATTACACAATGCCGCGTGATTATGAACTTTTAGTTTTTTCTAACAATATTACACGTATTGAGAATTCTGACTGTATGGATCTTCATGAATAGATATCATAATAACAACATACGTAGTACAAAGATATGAATGCTAAATCAGGAGATCCTAATTGTCCAAGTCTTAGGCCACAGGTTTCACAGTACTTAAGCAAGTACGTTGTACTAGTTAGTTTCAGAATTGAACATTTCATGCAAACAACATTTACGACTAGCTTAAGAATAAATACTGATGATAATAAATACTAGTACAAAGTATAAATAACATTTTGATGGCCGTCTATGATTTTATAAATCCTGGATACAATAGCGCTGCAATCCGCAGCTCTTTTATATTTGCTACTAATTGATTAGCTTCGATACAATTTAAAAACCATATAATATCCAAGCATCTAAACTAGATAGCTTTAAAGAGTATGTGACATATTTTGGTCTGTTTATTCTTATGCCTTTCTTTT]
[+] EMBL AK063361 [CGTCGAACACCTTGCGCGCGCCACCGCCACCGCAACCGCCGCCGCAATGTCCGTCACCGCCGGGGTCGCCCTCGCCGTCGCCGACGCGGTGTGGGCGGAGATCAGGTCCGCGGGCCAAGCCTCCGACGAGCACCTATCCATGTGAGTAAAACCAAGCGCCCGCCGCCTCGCTCCCTCCTCTTCCTTGACCTCGGTTGCTTCGAAACAGCCTCGAGGCCTTGTTCGGCAAGAACATGGTGCGCGCCTGCAAGATCCTCGACGAGGGCGGCGTCCGCCGCGTCACCGGCGCGCCCAGCGGCCGCTCGCTCTTCCTTGTCAGCTCCCCCATCTCTCGATTCCTCCTGTTCTTCTTCGTGTCACAGCCAAAAGTGAGTGAGTGAGGATTTGCCTGACCTAGGGTTTTGCGTCTCGGCGATTCAGGTGATGGGGGAGTCGAGGAGGAAGGAGGAGTACATCTGCTTCCCAGAGCACCTCTGCACCTGCTACTCCTTCTTCTACGACATCGTCGGCCGCGGCGAGCAGCTCTGCGTAAGTGTGGCATTCTGACCTGCTGCTGTTACTGCATCTGAATCCGTACATCTTTCAATCAGGCACACTGAATTTCATGGACACAAGAAACGGATAACCTATAAACACAAAAGAAACATGGCACCATTGCAATTGCAATTATCAGCTACTACTGAAGTACTGAGTACTGAAATGCTTTTTTTTTTACTGTTTTATTTTGACTGGTTACTGAAATGCTTGTTGATCTCTTTTGCATAGTAATTGCTTTAATTTTGTTTCTTCATGGCGCTATTACAATTGCAACTATCAGCCCGCGGCTACTGAATATTGAGATGCTTGTTGATCTCTTTTTCATGGACTAGTTGCTTTTGTTTCTTCATATGGTGCTATCGCAGTTGCAATTATCAGCTCGTGACTACTGAGTACTGGAATGCTTGTTGATCTCTCTTTTCATGGAGTAATTGCTTTTGTTTCTTCATCGCGCTATTGCAATTGCAATTATCGGCTCGTGACTACTGAGTATTGAGATGTTCGTTGATCTCTTTTTCATGGACTAATTGCTTTTTTTTTCTTCAGTGCAAGCACCAGTTAGCAGCCCGACTTGCGGAGGCCGTCAGTAAGCACCAGGACATTGAGGTAACCGATGAGGAGTTGGCCCACATGCTTGCTAAACTCTGAAAGTTTCAGAATTTCGGTACTTCAGCAATGCACATGAAGTTTGGGACGAATTGATTTTTAAGAAGGATTCTAACACTAGTACCGTTGTGCAAAATGACTGATCTCAGTGCAAAGAACTGAATGATGCTTGCTATATAATATCAGCTAGATGAGTTATCCTCGAATATTAGGCGTTCTCATGTAGCTGACAGGTATAATGTGAGGCGTCATGGTTTTATCATTTTGTTGTTATGCTTGTTGTTGTATTGAATGTTAATTAGCTTCAAGAATGAGGGGAAATGTGTGATATTCTTCATTCTTGTGAAGAGATTTATAAATTTGTTCCTTTGTTACTGAGTTACCCTGTTGCCCTCCTTTTTAGTTACTATCTTATCTTATTTTAGACAAATTGTTCCTTCTCTCTAGTATTGCTTTAGTAACAGGGGAAATATGAAAAGGTATTACACAATGCCGCGTGATTATGAACTTTTAGTTTTTTCTAACAATATTACACGTATTGAGAATTCTGACTGTATGGATCTTCATGAATAGATATCATAATAACAACATACGTAGTACAAAGATATGAATGCTAAATCAGGAGATCCTAATTGTCCAAGTCTTAGGCCACAGGTTTCACAGTACTTAAGCAAGTACGTTGTACTAGTTAGTTTCAGAATTGAACATTTCATGCAAACAACATTTACGACTAGCTTAAGAATAAATACTGATGATAATAAATACTAGTACAAAGTATAAATAACATTTTGATGGCCGTCTATGATTTTATAAATCCTGGATACAATAGCGCTGCAATCCGCAGCTCTTTTATATTTGCTACTAATTGATTAGCTTCGATACAATTTAAAAACCATATAATATCCAAGCATCTAAACTAGATAGCTTTAAAGAGTATGTGACATATTTTGGTCTGTTTATTCTTATGCCTTTCTTTT]
[+] EMBL AU162189 [ GCTTGCTAAACTCTGAAAGTTTCAGAATTTCGGTACTTCAGCAATGCACATGAAGTTTGGGACGAATTGATTTTTAAGAAGGATTCTAACACTAGTACCGTTGTGCAAAATGACTGATCTCAGTGCAAAGAACTGAATGATGCTTGCTATATAATATCAGCTAGATGAGTTATCCTCGAATATTAGGCGTTCTCATGTAGCTGACAGGTATAATGTGAGGCGTCATGGTTTTATCATTTTGTTGTTATGCTTGTNGTTGTATTGAATGTTAATTAGCTTCAAGAATGAGGGGAAATGTGTGATATCCTCCATCCTTGTGAAGAGATTTATAAATTTGTNCCTTTGTTACTGAGNTAaaa ]
consensusID : consensus_4201#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 772 fasta sequence
[CGCCGCCGCAATGTCCGTCACCGCCGGGGTCGCCCTCGCCGTCGCCGACGCGGTGTGGGCGGAGATCAGGTCCGCGGGCCAAGCCTCCGACGAGCACCTATCCATGTGAGTAAAACCAAGCGCCCGCCGCCTCGCTCCCTCCTCTTCCTTGACCTCGGTTGCTTCGAAACAGCCTCGAGGCCTTGTTCGGCAAGAACATGGTGCGCGCCTGCAAGATCCTCGACGAGGGCGGCGTCCGCCGCGTCACCGGCGCGCCCAGCGGCCGCTCGCTCTTCCTTGTGATGGGGGAGTCGAGGAGGAAGGAGGAGTACATCTGCTTCCCAGAGCACCTCTGCACCTGCTACTCCTTCTTCTACGACATCGTCGGCCGCGGCGAGCAGCTCTGCTGCAAGCACCAGTTAGCAGCCCGACTTGCGGAGGCCGTCAGTAAGCACCAGGACATTGAGGTAACCGATGAGGAGTTGGCCCACATGCTTGCTAAACTCTGAAAGTTTCAGAATTTCGGTACTTCAGCAATGCACATGAAGTTTGGGACGAATTGATTTTTAAGAAGGATTCTAACACTAGTACCGTTGTGCAAAATGACTGATCTCAGTGCAAAGAACTGAATGATGCTTGCTATATAATATCAGCTAGATGAGTTATCCTCGAATATTAGGCGTTCTCATGTAGCTGACAGGTATAATGTGAGGCGTCATGGTTTTATCATTTTGTTGTTATGCTTGTTGTTGTATTGAATGTTAATTAGCTTCAAGAATGAGGGGAAATGTGT]
[+] EMBL AK121652 [CGCCGCCGCAATGTCCGTCACCGCCGGGGTCGCCCTCGCCGTCGCCGACGCGGTGTGGGCGGAGATCAGGTCCGCGGGCCAAGCCTCCGACGAGCACCTATCCATGTGAGTAAAACCAAGCGCCCGCCGCCTCGCTCCCTCCTCTTCCTTGACCTCGGTTGCTTCGAAACAGCCTCGAGGCCTTGTTCGGCAAGAACATGGTGCGCGCCTGCAAGATCCTCGACGAGGGCGGCGTCCGCCGCGTCACCGGCGCGCCCAGCGGCCGCTCGCTCTTCCTTGTGATGGGGGAGTCGAGGAGGAAGGAGGAGTACATCTGCTTCCCAGAGCACCTCTGCACCTGCTACTCCTTCTTCTACGACATCGTCGGCCGCGGCGAGCAGCTCTGCTGCAAGCACCAGTTAGCAGCCCGACTTGCGGAGGCCGTCAGTAAGCACCAGGACATTGAGGTAACCGATGAGGAGTTGGCCCACATGCTTGCTAAACTCTGAAAGTTTCAGAATTTCGGTACTTCAGCAATGCACATGAAGTTTGGGACGAATTGATTTTTAAGAAGGATTCTAACACTAGTACCGTTGTGCAAAATGACTGATCTCAGTGCAAAGAACTGAATGATGCTTGCTATATAATATCAGCTAGATGAGTTATCCTCGAATATTAGGCGTTCTCATGTAGCTGACAGGTATAATGTGAGGCGTCATGGTTTTATCATTTTGTTGTTATGCTTGTTGTTGTATTGAATGTTAATTAGCTTCAAGAATGAGGGGAAATGTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4201#0 CGTCGAACACCTTGCGCGCGCCACCGCCACCGCAACCGCCGCCGCAATGTCCGTCACCGC 60
consensus_4201#1 ------------------------------------------------------------
consensus_4201#0 CGGGGTCGCCCTCGCCGTCGCCGACGCGGTGTGGGCGGAGATCAGGTCCGCGGGCCAAGC 120
consensus_4201#1 ------------------------------------------------------------
consensus_4201#0 CTCCGACGAGCACCTATCCATGTGAGTAAAACCAAGCGCCCGCCGCCTCGCTCCCTCCTC 180
consensus_4201#1 ------------------------------------------------------------
consensus_4201#0 TTCCTTGACCTCGGTTGCTTCGAAACAGCCTCGAGGCCTTGTTCGGCAAGAACATGGTGC 240
consensus_4201#1 ------------------------------------------------------------
consensus_4201#0 GCGCCTGCAAGATCCTCGACGAGGGCGGCGTCCGCCGCGTCACCGGCGCGCCCAGCGGCC 300
consensus_4201#1 ------------------------------------------------------------
consensus_4201#0 GCTCGCTCTTCCTTGTCAGCTCCCCCATCTCTCGATTCCTCCTGTTCTTCTTCGTGTCAC 360
consensus_4201#1 ------------------------------------------------------------
consensus_4201#0 AGCCAAAAGTGAGTGAGTGAGGATTTGCCTGACCTAGGGTTTTGCGTCTCGGCGATTCAG 420
consensus_4201#1 ------------------------------------------------------------
consensus_4201#0 GTGATGGGGGAGTCGAGGAGGAAGGAGGAGTACATCTGCTTCCCAGAGCACCTCTGCACC 480
consensus_4201#1 ------------------------------------------------------------
consensus_4201#0 TGCTACTCCTTCTTCTACGACATCGTCGGCCGCGGCGAGCAGCTCTGCGTAAGTGTGGCA 540
consensus_4201#1 ------------------------------------------------------------
consensus_4201#0 TTCTGACCTGCTGCTGTTACTGCATCTGAATCCGTACATCTTTCAATCAGGCACACTGAA 600
consensus_4201#1 ------------------------------------------------------------
consensus_4201#0 TTTCATGGACACAAGAAACGGATAACCTATAAACACAAAAGAAACATGGCACCATTGCAA 660
consensus_4201#1 ------------------------------------------------------------
consensus_4201#0 TTGCAATTATCAGCTACTACTGAAGTACTGAGTACTGAAATGCTTTTTTTTTTACTGTTT 720
consensus_4201#1 ----------------------------------------------------CGCCGCCG 8
* *
consensus_4201#0 TATTTTGACTGGTTACTGAAATGCTTGTTGATCTCTTTTGCATAGTAATTGCTTTAATTT 780
consensus_4201#1 CAATGTCCGTCACCGCCGGGGTCGCCCTCGCCGTCGCCGACGCGGTGTGGGCGGAGATCA 68
* * * * * * * * * ** * ** ** **
consensus_4201#0 TGTTTCTTCATGGCGCTATTACAATTGCAACTATCAGCCCGCG-GCTACTGAATATTGAG 839
consensus_4201#1 GGTCCGCGGGCCAAGCC-TCCGACGAGCACCTATCCATGTGAGTAAAACCAAGCGCCCGC 127
** ** * * *** ***** * * ** *
consensus_4201#0 ATGCTTGTTGATCTCTTTTTCATGGACT-AGTTGCTTTTGTTTCTTCATATGGTGCTATC 898
consensus_4201#1 CGCCTCGCTCCCTCCTCTTCCTTGACCTCGGTTGCTTCGAAACAGCCTCGAGGCCTTGTT 187
** * * ** ** * ** ** ******* * ** * *
consensus_4201#0 --GCAGTTGCA-ATTATCAGCTCGT--GACTACTGAGTACTGGAATGCTTGTTGATCTCT 953
consensus_4201#1 CGGCAAGAACATGGTGCGCGCCTGCAAGATCCTCGACGAGGGCGGCGTCCGCCGCGTCAC 247
*** ** * ** * ** ** * * * * *
consensus_4201#0 CTTTTCATGGAGTAATTGCTTTTGTTTCTTCATCGCGCTATTGCAATTGCAATTATCGGC 1013
consensus_4201#1 CGGCGCGCCCAGCGGCCGCTCGCTCTTCCTTGTGATGGGGGAGTCGAGGAGGAAGGAGGA 307
* * ** *** *** * * * * * **
consensus_4201#0 TCGTGACTACT-----GAGTATTGAGATGTTCGTTGATCTCTTTTTCATGG----ACTAA 1064
consensus_4201#1 GTACATCTGCTTCCCAGAGCACCTCTGCACCTGCTACTCCTTCTTCTACGACATCGTCGG 367
** ** *** * * * ** * ** * *
consensus_4201#0 TTGCTTTTTTTTTCTTCAGTGCAAGCACCAGTTAGCAGCCCGACTTGCGGAGGCCGTCAG 1124
consensus_4201#1 CCGCGGCGAGCAGCTCTGCTGCAAGCACCAGTTAGCAGCCCGACTTGCGGAGGCCGTCAG 427
** ** *****************************************
consensus_4201#0 TAAGCACCAGGACATTGAGGTAACCGATGAGGAGTTGGCCCACATGCTTGCTAAACTCTG 1184
consensus_4201#1 TAAGCACCAGGACATTGAGGTAACCGATGAGGAGTTGGCCCACATGCTTGCTAAACTCTG 487
************************************************************
consensus_4201#0 AAAGTTTCAGAATTTCGGTACTTCAGCAATGCACATGAAGTTTGGGACGAATTGATTTTT 1244
consensus_4201#1 AAAGTTTCAGAATTTCGGTACTTCAGCAATGCACATGAAGTTTGGGACGAATTGATTTTT 547
************************************************************
consensus_4201#0 AAGAAGGATTCTAACACTAGTACCGTTGTGCAAAATGACTGATCTCAGTGCAAAGAACTG 1304
consensus_4201#1 AAGAAGGATTCTAACACTAGTACCGTTGTGCAAAATGACTGATCTCAGTGCAAAGAACTG 607
************************************************************
consensus_4201#0 AATGATGCTTGCTATATAATATCAGCTAGATGAGTTATCCTCGAATATTAGGCGTTCTCA 1364
consensus_4201#1 AATGATGCTTGCTATATAATATCAGCTAGATGAGTTATCCTCGAATATTAGGCGTTCTCA 667
************************************************************
consensus_4201#0 TGTAGCTGACAGGTATAATGTGAGGCGTCATGGTTTTATCATTTTGTTGTTATGCTTGTT 1424
consensus_4201#1 TGTAGCTGACAGGTATAATGTGAGGCGTCATGGTTTTATCATTTTGTTGTTATGCTTGTT 727
************************************************************
consensus_4201#0 GTTGTATTGAATGTTAATTAGCTTCAAGAATGAGGGGAAATGTGTGATATTCTTCATTCT 1484
consensus_4201#1 GTTGTATTGAATGTTAATTAGCTTCAAGAATGAGGGGAAATGTGT--------------- 772
*********************************************
consensus_4201#0 TGTGAAGAGATTTATAAATTTGTTCCTTTGTTACTGAGTTACCCTGTTGCCCTCCTTTTT 1544
consensus_4201#1 ------------------------------------------------------------
consensus_4201#0 AGTTACTATCTTATCTTATTTTAGACAAATTGTTCCTTCTCTCTAGTATTGCTTTAGTAA 1604
consensus_4201#1 ------------------------------------------------------------
consensus_4201#0 CAGGGGAAATATGAAAAGGTATTACACAATGCCGCGTGATTATGAACTTTTAGTTTTTTC 1664
consensus_4201#1 ------------------------------------------------------------
consensus_4201#0 TAACAATATTACACGTATTGAGAATTCTGACTGTATGGATCTTCATGAATAGATATCATA 1724
consensus_4201#1 ------------------------------------------------------------
consensus_4201#0 ATAACAACATACGTAGTACAAAGATATGAATGCTAAATCAGGAGATCCTAATTGTCCAAG 1784
consensus_4201#1 ------------------------------------------------------------
consensus_4201#0 TCTTAGGCCACAGGTTTCACAGTACTTAAGCAAGTACGTTGTACTAGTTAGTTTCAGAAT 1844
consensus_4201#1 ------------------------------------------------------------
consensus_4201#0 TGAACATTTCATGCAAACAACATTTACGACTAGCTTAAGAATAAATACTGATGATAATAA 1904
consensus_4201#1 ------------------------------------------------------------
consensus_4201#0 ATACTAGTACAAAGTATAAATAACATTTTGATGGCCGTCTATGATTTTATAAATCCTGGA 1964
consensus_4201#1 ------------------------------------------------------------
consensus_4201#0 TACAATAGCGCTGCAATCCGCAGCTCTTTTATATTTGCTACTAATTGATTAGCTTCGATA 2024
consensus_4201#1 ------------------------------------------------------------
consensus_4201#0 CAATTTAAAAACCATATAATATCCAAGCATCTAAACTAGATAGCTTTAAAGAGTATGTGA 2084
consensus_4201#1 ------------------------------------------------------------
consensus_4201#0 CATATTTTGGTCTGTTTATTCTTATGCCTTTCTTTT 2120
consensus_4201#1 ------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||