These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4203#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1893 fasta sequence [GTGAGCCAGCGACGCCACCGCGCCGCGCGCCATGCCGCTCCTCCTCCACCCGCGCTTCCCCTCCTCCCACGCCGCGGCCTGCGCCCACCGCGCCGCCGCCGCCCACCGCGACGCGCGGCCCGCGCTTCGCCTCCCCGAGCTACACGCGACGAGGCGGAGGCGGAACAACGTCGCGTGCCGCGCGACCAGGGCCAGGGAGGCGCCGCCGCAGCAGCAGAATACGGCGGCGGCGCTGTCCAAGGAGGCGCACAAGTACTTCGACCACGCCGTGGTCACCGTCCGCGCGGGCGACGGCGGCCACGGCGCCGTCCTCGCCATGCCGGCCCCCCCCTCGACGGACGCCCCCAAATCCCCCCGCCGCAGGTCGGACAAGGGCAAGAGGAGCGGCGTGAAGAAGGTGTCGTACAAGAGGAACTACGACGGGTCGGTGGCGCTGCCGATGGGCGGCCACGGCGGCGATGTGGTGGTGTACGCCGACGAGGCGGAGGAGACGCTGCTCCGGTTCCACGAGAAGGCCCGATACTGCGCCAAGAGGGGAGGCAACGTGGGCGCCACCGGAACCCTGAGCTCGCGGATGCACAATGGCTTCGCCGGGGAGACGCTCAGGATACCCGTGCCTGTAGGTACTGTTGTGAAGCGCAAGAAAGGCGCTGTTCTTGCTGATTTGGCTCATCCCGGTGATGAAGTTATTGTTGCTAGGGGTGGACAAGGCGGGATAAGCTTGATCGATGTGCCTGAGTACAGAAGGAGGAAAGCCATGGTTTTATCACCTAATATCATGCGTGATGTTAGTGACAGGGTGTTAATTCATGGTCAGCCTGGTGAGGAAGTAAGCTTGGAGTTAATCTTAAGGGTGGTTGCAGACGTTGGTCTTGTGGGACTTCCAAATGCTGGAAAGTCAACACTTCTATCAGCAATAACACTTGCAAGACCAGACATTGCTGATTATCCATTCACTACATTAATGCCAAATCTTGGTCGTCTTGGTGGAGATCCTGCTCTAGGGGCGTTGCAGTTTTCCTCAGAGGCAACATTGGCAGACTTGCCAGGTCTCATTGAGGGTGCTCATCTGGGCAAGGGTCTTGGTCGCAATTTCTTGAGACATTTAAGGAGAACTAGAGTAATCGTCCATGTTGTTGATGCTGCTGCTGATGACCCTGTGGATGATTATAAGATTGTTAGAGAAGAACTCAGGATGTATAACCCCCAATATCTGGAGAGACCTTACGTTGTGGTTCTGAATAAGATTGATCTTCCTAAGGCCCAAGACAGGCTATCTTCACTGGCTTTTGAGATATCCTCAATAGGCTGTGAAGAATGTGATGGTAACAATACAAGCGAAGACAGTTTAAACGGAAATACAGGCGAACATAATACCTCATCAGAGACTAAAGTTGAAGGTGGTGAAAAGGAACTTCGGGACTATCCAAGACCTCAAGCTGTTGTTGGTGCAAGTGTACTGAAGCACATCGGAATCGATGAGATGCTAAAGGAGATTAGGGCAGCCCTGAGAAAATGTTTTGATCACAGGTTACCTGAGCCATGAATGGAAGTCAGCCAGCATACCAGAGGCTAGTACGAAGACCATAGACAAGTTCTCAAGTAGCAGAGACAGATCGAGCTCGGCTCTTGCAAGGACAACAGGGTTCCCTTGGTTTGCAGCAATTTCGACGGTTGATGAAGCATGAAAATGACCATCAGAAAGTGTGATGATATGGGAGTTTATCAGTATGAGAAGATGCTATTCGTTAAAAAAAATTATTCGTTCAAAAATGTATGAGAAGATGGTACGAAATGCCAGTCAGCAGACGCGTGTGAATAGGAAAGGATAGTTCTGTGTGTTGTTAGACCCTTTTGTGTACGATCCAATTGGCACGTAATGAAGCAAGCAGC] [+] EMBL AK109922 [GTGAGCCAGCGACGCCACCGCGCCGCGCGCCATGCCGCTCCTCCTCCACCCGCGCTTCCCCTCCTCCCACGCCGCGGCCTGCGCCCACCGCGCCGCCGCCGCCCACCGCGACGCGCGGCCCGCGCTTCGCCTCCCCGAGCTACACGCGACGAGGCGGAGGCGGAACAACGTCGCGTGCCGCGCGACCAGGGCCAGGGAGGCGCCGCCGCAGCAGCAGAATACGGCGGCGGCGCTGTCCAAGGAGGCGCACAAGTACTTCGACCACGCCGTGGTCACCGTCCGCGCGGGCGACGGCGGCCACGGCGCCGTCCTCGCCATGCCGGCCCCCCCCTCGACGGACGCCCCCAAATCCCCCCGCCGCAGGTCGGACAAGGGCAAGAGGAGCGGCGTGAAGAAGGTGTCGTACAAGAGGAACTACGACGGGTCGGTGGCGCTGCCGATGGGCGGCCACGGCGGCGATGTGGTGGTGTACGCCGACGAGGCGGAGGAGACGCTGCTCCGGTTCCACGAGAAGGCCCGATACTGCGCCAAGAGGGGAGGCAACGTGGGCGCCACCGGAACCCTGAGCTCGCGGATGCACAATGGCTTCGCCGGGGAGACGCTCAGGATACCCGTGCCTGTAGGTACTGTTGTGAAGCGCAAGAAAGGCGCTGTTCTTGCTGATTTGGCTCATCCCGGTGATGAAGTTATTGTTGCTAGGGGTGGACAAGGCGGGATAAGCTTGATCGATGTGCCTGAGTACAGAAGGAGGAAAGCCATGGTTTTATCACCTAATATCATGCGTGATGTTAGTGACAGGGTGTTAATTCATGGTCAGCCTGGTGAGGAAGTAAGCTTGGAGTTAATCTTAAGGGTGGTTGCAGACGTTGGTCTTGTGGGACTTCCAAATGCTGGAAAGTCAACACTTCTATCAGCAATAACACTTGCAAGACCAGACATTGCTGATTATCCATTCACTACATTAATGCCAAATCTTGGTCGTCTTGGTGGAGATCCTGCTCTAGGGGCGTTGCAGTTTTCCTCAGAGGCAACATTGGCAGACTTGCCAGGTCTCATTGAGGGTGCTCATCTGGGCAAGGGTCTTGGTCGCAATTTCTTGAGACATTTAAGGAGAACTAGAGTAATCGTCCATGTTGTTGATGCTGCTGCTGATGACCCTGTGGATGATTATAAGATTGTTAGAGAAGAACTCAGGATGTATAACCCCCAATATCTGGAGAGACCTTACGTTGTGGTTCTGAATAAGATTGATCTTCCTAAGGCCCAAGACAGGCTATCTTCACTGGCTTTTGAGATATCCTCAATAGGCTGTGAAGAATGTGATGGTAACAATACAAGCGAAGACAGTTTAAACGGAAATACAGGCGAACATAATACCTCATCAGAGACTAAAGTTGAAGGTGGTGAAAAGGAACTTCGGGACTATCCAAGACCTCAAGCTGTTGTTGGTGCAAGTGTACTGAAGCACATCGGAATCGATGAGATGCTAAAGGAGATTAGGGCAGCCCTGAGAAAATGTTTTGATCACAGGTTACCTGAGCCATGAATGGAAGTCAGCCAGCATACCAGAGGCTAGTACGAAGACCATAGACAAGTTCTCAAGTAGCAGAGACAGATCGAGCTCGGCTCTTGCAAGGACAACAGGGTTCCCTTGGTTTGCAGCAATTTCGACGGTTGATGAAGCATGAAAATGACCATCAGAAAGTGTGATGATATGGGAGTTTATCAGTATGAGAAGATGCTATTCGTTAAAAAAAATTATTCGTTCAAAAATGTATGAGAAGATGGTACGAAATGCCAGTCAGCAGACGCGTGTGAATAGGAAAGGATAGTTCTGTGTGTTGTTAGACCCTTTTGTGTACGATCCAATTGGCACGTAATGAAGCAAGCAGC] consensusID : consensus_4203#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1266 fasta sequence [AAATGCCCTAAAGGCACACTTCTATCAGCAATAACACTTGCAAGACCAGACATTGCTGATTATCCATTCACTACATTAATGCCAAATCTTGGTCGTCTTGGTGGAGATCCTGCTCTAGGGGCGTTGCAGTTTTCCTCAGAGGCAACATTGGCAGACTTGCCAGGTCTCATTGAGGGTGCTCATCTGGGCAAGGTGCTCTTTTACTTTTATGCACTTTGCTTATTTCATACAAAATGTTTCTTTGCAATAGCCATGTTGCTTCCCCTCATTATTTTCTTTGGCATCATCACTTGACTTAATATTACATTGCAGGGTCTTGGTCGCAATTTCTTGAGACATTTAAGGAGAACTAGAGTAATCGTCCATGTTGTTGATGCTGCTGCTGATGACCCTGTGGATGATTATAAGATTGTTAGAGAAGAACTCAGGATGTATAACCCCCAATATCTGGAGAGACCTTACGTTGTGGTTCTGAATAAGATTGATCTTCCTAAGGCCCAAGACAGGCTATCTTCACTGGCTTTTGAGATATCCTCAATAGGCTGTGAAGAATGTGATGGTAACAATACAAGCGAAGACAGTTTAAACGGAAATACAGGCGAACATAATACCTCATCAGAGACTAAAGTTGAAGGTGGTGAAAAGGAACTTCGGGACTATCCAAGACCTCAAGCTGTTGTTGGTGCAAGTGTACTGTATGTCTCTTCAGTTGACCAAACTACATGCATGTTCTTTTTACTC-AAAAACGTTTTACATCCCTCACATGATCTTACTATCATTCCCTTTGAACTCACGGTCGTGGTTCTGCAGGAAGCACATCGGAATCGATGAGATGCTAAAGGAGATTAGGGCAGCCCTGAGAAAATGTTTTGATCACAGGTTACCTGAGCCATGAATGGAAGTCAGCCAGCATACCAGAGGTTAGTACGAAGACCATAGACAAGTTCTCAAGTAGCAGAGACAGATCGAGCTCGGCTCTTGCAAGGACAACAGGGTTCCCTTGGTTTGCAGCAATTTCGACGGTTGATGAAGCATGAAAATGACCATCAGAAAGTGTGATGATATGGGAGTTTATCAGTATGAGAAGATGCTATTCGTTAAAAAAAATTATTCGTTCAAAAATGTATGAGAAGATGGTACGAAATGCCAGTCAGCAGACGCGTGTGAATAGGAAAGGATAGTTCTGTGTGTTGTTAGACCCTTTTGTGTACGATCCAATTGAGGGGTAATGAAGCAAGCAGCTTTGATGCAAAAAACATAAAAAGA] [+] EMBL CB680955 [AAATGCCCTAAAGGCACACTTCTATCAGCAATAACACTTGCAAGACCAGACATTGCTGATTATCCATTCACTACATTAATGCCAAATCTTGGTCGTCTTGGTGGAGATCCTGCTCTAGGGGCGTTGCAGTTTTCCTCAGAGGCAACATTGGCAGACTTGCCAGGTCTCATTGAGGGTGCTCATCTGGGCAAGGTGCTCTTTTACTTTTATGCACTTTGCTTATTTCATACAAAATGTTTCTTTGCAATAGCCATGTTGCTTCCCCTCATTATTTTCTTTGGCATCATCACTTGACTTAATATTACATTGCAGGGTCTTGGTCGCAATTTCTTGAGACATTTAAGGAGAACTAGAGTAATCGTCCATGTTGTTGATGCTGCTGCTGATGACCCTGTGGATGATTATAAGATTGTTAGAGAAGAACTCAGGATGTATAACCCCCAATATCTGGAGAGACCTTACGTTGTGGTTCTGAATAAGATTGATCTTCCTAAGGCCCAAGACAGGCTATCTTCACTGGCTTTTGAGATATCCTCAATAGGCTGTGAAGAATGTGATGGTAACAATACAAGCGAAGACAGTTTAAACGGAAATACAGGCGAACATAATACCTCATCAGAGACTAAAGTTGAAGGTGGTGAAAAGGAACTTCGGGACTATCCAAGACCTCAAGCTGTTGTTGGTGCAAGTGTACTGTATGTCTCTTCAGTTGACCAAACTACATGCATGTTCTTTTTACTC AAAAACGTTTTACATCCCTCACATG ] [-] EMBL CB680956 [ AGGCTATCTTCACTGGCTTTTGAGATATCCTCAATAGGCTGTGAAGAATGTGATGGTAACAATACAAGCGAAGACAGTTTAAACGGAAATACAGGCGAACATAATACCTCATCAGAGACTAAAGTTGAAGGTGGTGAAAAGGAACTTCGGGACTATCCAAGACCTCAAGCTGTTGTTGGTGCAAGTGTACTGTATGTCTCTTCAGTTGACCAAACTACATGCATGTTCTTTTTACTCGAAAACCGTTTTACATCCCTCACATGATCTTACTATCATTCCCTTTGAACTCACGGTCGTGGTTCTGCAGGAAGCACATCGGAATCGATGAGATGCTAAAGGAGATTAGGGCAGCCCTGAGAAAATGTTTTGATCACAGGTTACCTGAGCCATGAATGGAAGTCAGCCAGCATACCAGAGGTTAGTACGAAGACCATAGACAAGTTCTCAAGTAGCAGAGACAGATCGAGCTCGGCTCTTGCAAGGACAACAGGGTTCCCTTGGTTTGCAGCAATTTCGACGGTTGATGAAGCATGAAAATGACCATCAGAAAGTGTGATGATATGGGAGTTTATCAGTATGAGAAGATGCTATTCGTTAAAAAAAATTATTCGTTCAAAAATGTATGAGAAGATGGTACGAAATGCCAGTCAGCAGACGCGTGTGAATAGGAAAGGATAGTTCTGTGTGTTGTTAGACCCTTTTGTGTACGATCCAATTGAGGGGTAATGAAGCAAGCAGCTTTGATGCAAAAAACATAAAAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4203#0 GTGAGCCAGCGACGCCACCGCGCCGCGCGCCATGCCGCTCCTCCTCCACCCGCGCTTCCC 60 consensus_4203#1 ------------------------------------------------------------ consensus_4203#0 CTCCTCCCACGCCGCGGCCTGCGCCCACCGCGCCGCCGCCGCCCACCGCGACGCGCGGCC 120 consensus_4203#1 ------------------------------------------------------------ consensus_4203#0 CGCGCTTCGCCTCCCCGAGCTACACGCGACGAGGCGGAGGCGGAACAACGTCGCGTGCCG 180 consensus_4203#1 ------------------------------------------------------------ consensus_4203#0 CGCGACCAGGGCCAGGGAGGCGCCGCCGCAGCAGCAGAATACGGCGGCGGCGCTGTCCAA 240 consensus_4203#1 ------------------------------------------------------------ consensus_4203#0 GGAGGCGCACAAGTACTTCGACCACGCCGTGGTCACCGTCCGCGCGGGCGACGGCGGCCA 300 consensus_4203#1 ------------------------------------------------------------ consensus_4203#0 CGGCGCCGTCCTCGCCATGCCGGCCCCCCCCTCGACGGACGCCCCCAAATCCCCCCGCCG 360 consensus_4203#1 ------------------------------------------------------------ consensus_4203#0 CAGGTCGGACAAGGGCAAGAGGAGCGGCGTGAAGAAGGTGTCGTACAAGAGGAACTACGA 420 consensus_4203#1 ------------------------------------------------------------ consensus_4203#0 CGGGTCGGTGGCGCTGCCGATGGGCGGCCACGGCGGCGATGTGGTGGTGTACGCCGACGA 480 consensus_4203#1 ------------------------------------------------------------ consensus_4203#0 GGCGGAGGAGACGCTGCTCCGGTTCCACGAGAAGGCCCGATACTGCGCCAAGAGGGGAGG 540 consensus_4203#1 ------------------------------------------------------------ consensus_4203#0 CAACGTGGGCGCCACCGGAACCCTGAGCTCGCGGATGCACAATGGCTTCGCCGGGGAGAC 600 consensus_4203#1 ------------------------------------------------------------ consensus_4203#0 GCTCAGGATACCCGTGCCTGTAGGTACTGTTGTGAAGCGCAAGAAAGGCGCTGTTCTTGC 660 consensus_4203#1 ------------------------------------------------------------ consensus_4203#0 TGATTTGGCTCATCCCGGTGATGAAGTTATTGTTGCTAGGGGTGGACAAGGCGGGATAAG 720 consensus_4203#1 ------------------------------------------------------------ consensus_4203#0 CTTGATCGATGTGCCTGAGTACAGAAGGAGGAAAGCCATGGTTTTATCACCTAATATCAT 780 consensus_4203#1 ----------------------AAATGCCCTAAAGGCACACTTCTATCAGC-AATAACAC 37 * * * **** ** ** ***** * **** ** consensus_4203#0 GCGTGATGTTAGTGACAGGGTGTTAATTCATGGTCAGCCTGGTGAGGAAGTAAGCTTGGA 840 consensus_4203#1 TTGCAAGACCAG----ACATTGCTGATTATCCATTCACTACATTAATGCCAAATCTTGG- 92 * * ** * ** * *** * * * * ** ***** consensus_4203#0 GTTAATCTTAAGGGTGGTTGCAGACGTTGGTCTTGTGGGACTTCCAAATGCTGGAAAGTC 900 consensus_4203#1 --TCGTCTTGGTGGAGATC-CTGCTCTAGGGGCGTTGCAGTTTTCCTCAGAGGCAACATT 149 * **** ** * * * * * ** ** ** * * * ** * consensus_4203#0 AACACTTCTATCAGCAATAACACTTGCAAGACCAGACATTGCTGATTATCCATTCACTAC 960 consensus_4203#1 GGCAGACTTGCCAG--GTCTCATTGAGGGTGCTCATCTGGGCAAGGTGCTCTTTTACT-- 205 ** * *** * ** * * * ** * * ** *** consensus_4203#0 ATTAATGCCAAATCTTGGTCGTCTTGGTGGAGATCCTGCTCT---AGGGGCGTTGCAGTT 1017 consensus_4203#1 -TTTATGC---ACTTTGCTTATTTCATACAAAATGTTTCTTTGCAATAGCCATGTTGCTT 261 ** **** * *** * * * * ** * ** * * * * * ** consensus_4203#0 TTCCTCAGAGGCAACATTGGCAGACTTGCCAGGTCTCATTGAGGGTGCTCATCTGGGCAA 1077 consensus_4203#1 CCCCTCATTATTTTCTTTGGCATCATCACTTGACTTAAT--------ATTACATTGC--A 311 ***** * ****** * * * * ** * * * * * consensus_4203#0 GGGTCTTGGTCGCAATTTCTTGAGACATTTAAGGAGAACTAGAGTAATCGTCCATGTTGT 1137 consensus_4203#1 GGGTCTTGGTCGCAATTTCTTGAGACATTTAAGGAGAACTAGAGTAATCGTCCATGTTGT 371 ************************************************************ consensus_4203#0 TGATGCTGCTGCTGATGACCCTGTGGATGATTATAAGATTGTTAGAGAAGAACTCAGGAT 1197 consensus_4203#1 TGATGCTGCTGCTGATGACCCTGTGGATGATTATAAGATTGTTAGAGAAGAACTCAGGAT 431 ************************************************************ consensus_4203#0 GTATAACCCCCAATATCTGGAGAGACCTTACGTTGTGGTTCTGAATAAGATTGATCTTCC 1257 consensus_4203#1 GTATAACCCCCAATATCTGGAGAGACCTTACGTTGTGGTTCTGAATAAGATTGATCTTCC 491 ************************************************************ consensus_4203#0 TAAGGCCCAAGACAGGCTATCTTCACTGGCTTTTGAGATATCCTCAATAGGCTGTGAAGA 1317 consensus_4203#1 TAAGGCCCAAGACAGGCTATCTTCACTGGCTTTTGAGATATCCTCAATAGGCTGTGAAGA 551 ************************************************************ consensus_4203#0 ATGTGATGGTAACAATACAAGCGAAGACAGTTTAAACGGAAATACAGGCGAACATAATAC 1377 consensus_4203#1 ATGTGATGGTAACAATACAAGCGAAGACAGTTTAAACGGAAATACAGGCGAACATAATAC 611 ************************************************************ consensus_4203#0 CTCATCAGAGACTAAAGTTGAAGGTGGTGAAAAGGAACTTCGGGACTATCCAAGACCTCA 1437 consensus_4203#1 CTCATCAGAGACTAAAGTTGAAGGTGGTGAAAAGGAACTTCGGGACTATCCAAGACCTCA 671 ************************************************************ consensus_4203#0 AGCTGTTGTTGGTGCAAGTGTACTG----------------------------------- 1462 consensus_4203#1 AGCTGTTGTTGGTGCAAGTGTACTGTATGTCTCTTCAGTTGACCAAACTACATGCATGTT 731 ************************* consensus_4203#0 ------------------------------------------------------------ consensus_4203#1 CTTTTTACTCAAAAACGTTTTACATCCCTCACATGATCTTACTATCATTCCCTTTGAACT 791 consensus_4203#0 --------------------AAGCACATCGGAATCGATGAGATGCTAAAGGAGATTAGGG 1502 consensus_4203#1 CACGGTCGTGGTTCTGCAGGAAGCACATCGGAATCGATGAGATGCTAAAGGAGATTAGGG 851 **************************************** consensus_4203#0 CAGCCCTGAGAAAATGTTTTGATCACAGGTTACCTGAGCCATGAATGGAAGTCAGCCAGC 1562 consensus_4203#1 CAGCCCTGAGAAAATGTTTTGATCACAGGTTACCTGAGCCATGAATGGAAGTCAGCCAGC 911 ************************************************************ consensus_4203#0 ATACCAGAGGCTAGTACGAAGACCATAGACAAGTTCTCAAGTAGCAGAGACAGATCGAGC 1622 consensus_4203#1 ATACCAGAGGTTAGTACGAAGACCATAGACAAGTTCTCAAGTAGCAGAGACAGATCGAGC 971 ********** ************************************************* consensus_4203#0 TCGGCTCTTGCAAGGACAACAGGGTTCCCTTGGTTTGCAGCAATTTCGACGGTTGATGAA 1682 consensus_4203#1 TCGGCTCTTGCAAGGACAACAGGGTTCCCTTGGTTTGCAGCAATTTCGACGGTTGATGAA 1031 ************************************************************ consensus_4203#0 GCATGAAAATGACCATCAGAAAGTGTGATGATATGGGAGTTTATCAGTATGAGAAGATGC 1742 consensus_4203#1 GCATGAAAATGACCATCAGAAAGTGTGATGATATGGGAGTTTATCAGTATGAGAAGATGC 1091 ************************************************************ consensus_4203#0 TATTCGTTAAAAAAAATTATTCGTTCAAAAATGTATGAGAAGATGGTACGAAATGCCAGT 1802 consensus_4203#1 TATTCGTTAAAAAAAATTATTCGTTCAAAAATGTATGAGAAGATGGTACGAAATGCCAGT 1151 ************************************************************ consensus_4203#0 CAGCAGACGCGTGTGAATAGGAAAGGATAGTTCTGTGTGTTGTTAGACCCTTTTGTGTAC 1862 consensus_4203#1 CAGCAGACGCGTGTGAATAGGAAAGGATAGTTCTGTGTGTTGTTAGACCCTTTTGTGTAC 1211 ************************************************************ consensus_4203#0 GATCCAATTGGCACGTAATGAAGCAAGCAGC------------------------ 1893 consensus_4203#1 GATCCAATTGAGGGGTAATGAAGCAAGCAGCTTTGATGCAAAAAACATAAAAAGA 1266 ********** ***************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||