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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4207#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 929 fasta sequence
[ACGGCCGACGGGGGAGGAAGAAGCAGCAGCTCCATGCACCGGCTTCCTCTGGCCTCACGGCCACCGGGTCCGCATCGCGCGGCGGCCGCCGCTCATCGCGCTCCCCAGAGGACGACGACGGCGTGCTGCGGCCGCCTGAAGCAGGAGGCGACGCCGTCATTTGCCTCTCTCGCCGTCGCTGCGTCTGCGGCAGCAGAGCGCGCGGCCACGCCGCTGTTGGCCGCGGCGGCGCTCCTCCTTTCTGCCGCATCTCCTGGCTTCCTAGCTTCCACACCATCAGCTTTTGCTCAATCCGAAGGCGCAGCGCTGTTCCGGAAGGCGTGCATCGGCTGCCATGATATGGGAGGAAATATCCTACAGCCGGTAAGCTTCTGAAACCATTACTCGATGGCCGGACACAAATTTTCAACCTTTTTATTAGCTTGCTGATTTGTCACGTACAGGGCGCCACTCTGTACATGAAGGATCTTGAGAGAAATGGAGTTGCCACGGAGGACGAGCTATACAATATAACGTACTACGGGAAGGGAAGAATGCCGGGCTTCGGAGAAAAATGCACCCCGAGAGGGCAGTGCACTTTCGGACCTCGGCTGGTCGAAGATGATATCAAGCTACTGGCCGCGTTTGTCAAGTCGCAGGC-TGAAAATGGC-TGGCCTAAGATCGACGGCGATGGAGATTAGTTCA-CCGACACAACAGAGACAAGTGGCAAACATTGTTCAGTGAACCAGTGTATAG-TTTGGAGTCAGGTGTGCTGTTTGCATCTGTAAAATCCCAACGAAATCCATACAAATAAAAAGTAGCTT-AGGCCGTGTTTA-GATTTCAACTTTTTTTTCAAACTT-CCAACTTTTTCGTCACATCAAATGTTTGGACACATTTATGGAGCATCAAATGTGGACGAAAAAAACCCAATTGCACAATCCGACTGTAAA]
[+] EMBL AK068245 [ACGGCCGACGGGGGAGGAAGAAGCAGCAGCTCCATGCACCGGCTTCCTCTGGCCTCACGGCCACCGGGTCCGCATCGCGCGGCGGCCGCCGCTCATCGCGCTCCCCAGAGGACGACGACGGCGTGCTGCGGCCGCCTGAAGCAGGAGGCGACGCCGTCATTTGCCTCTCTCGCCGTCGCTGCGTCTGCGGCAGCAGAGCGCGCGGCCACGCCGCTGTTGGCCGCGGCGGCGCTCCTCCTTTCTGCCGCATCTCCTGGCTTCCTAGCTTCCACACCATCAGCTTTTGCTCAATCCGAAGGCGCAGCGCTGTTCCGGAAGGCGTGCATCGGCTGCCATGATATGGGAGGAAATATCCTACAGCCGGTAAGCTTCTGAAACCATTACTCGATGGCCGGACACAAATTTTCAACCTTTTTATTAGCTTGCTGATTTGTCACGTACAGGGCGCCACTCTGTACATGAAGGATCTTGAGAGAAATGGAGTTGCCACGGAGGACGAGCTATACAATATAACGTACTACGGGAAGGGAAGAATGCCGGGCTTCGGAGAAAAATGCACCCCGAGAGGGCAGTGCACTTTCGGACCTCGGCTGGTCGAAGATGATATCAAGCTACTGGCCGCGTTTGTCAAGTCGCAGGC TGAAAATGGC TGGCCTAAGATCGACGGCGATGGAGATTAGTTCA CCGACACAACAGAGACAAGTGGCAAACATTGTTCAGTGAACCAGTGTATAG TTTGGAGTCAGGTGTGCTGTTTGCATCTGTAAAATCCCAACGAAATCCATACAAATAAAAAGTAGCTT AGGCCGTGTTTA GATTTCAACTTTTTTTTCAAACTT CCAACTTTTTCGTCACATCAAATGTTTGGACACATTTATGGAGCATCAAATGTGGACGAAAAAAACCCAATTGCACAATCCGACTGTAAA]
[+] EMBL C73700 [ CGCCACTCTGTACATGAAGGATCTTGAGAGAAATGGAGTTGCCACGGAGGACGAGCTATACAATATAACGTACTACGGGAAGGGAAGAATGCCGGGCTTCGGAGAAAAATGCACCCCGAGAGGGCAGTGCACTTTCGGACCTCGGCTGGTCGAAGATGATATCAAGCTACTGGCCGCGTTTGNNTTTTCGCAGGCTTGAAAATGGCTTGGCCTAAGATCGACGGCGATGGAGATTAGTTCACCCGACACAACAGAGACAAGTGGCAAACATTGTTCAGTG ACCAGTGTATAGTTTTNGAGTCAGGTGTGCTGTTTTCATCTGTAAAATCCCAACGGAATCCATACAAATAAAAAGTAGCTTAAGGCC NGTTTAGGATTTCAACTTTTTTTTCAAACTTNCCACTTTTTTCG CACATCAAATGTTTGG CACATTTATNGGGCATCAAATt ]
consensusID : consensus_4207#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence
[CGAGCTTGCCATGATATGGGAGGAAATATCCTACAGCCGGGCGCCACTCTGTACATGAAGGATCTTGAGAGAAATGGAGTTGCCACGGAGGACGAGCTATACAATATAACGTACTACGGGAAGGGAAGAATGCCGGGCTTCGGAGAAAAATGCACCCCGAGAGGGCAGTACACTTTCGGACCTCGGCTGGTCGAAGATGATATCAAGCTACTGGCCGCGTTTGTCAAGTCGCAGGCTGAAAATGGCTGGCCTAAGATCGACGGCGATGGAGATTAGTTCACCGACACAACAGAGACAAGGYGGCAAACATTGTTCAGTGAACCAGTGTATAGTTTGGAGTCAGGTGTYCTGTTTGCATCTGTAAAATCCCAACGRAATCCATACAAATAAAARGTAGCTTAGGCCGTKTTTAGATTTCAACTTTTTTTTCAAACTCC]
[+] EMBL BE229553 [CGAGCTTGCCATGATATGGGAGGAAATATCCTACAGCCGGGCGCCACTCTGTACATGAAGGATCTTGAGAGAAATGGAGTTGCCACGGAGGACGAGCTATACAATATAACGTACTACGGGAAGGGAAGAATGCCGGGCTTCGGAGAAAAATGCACCCCGAGAGGGCAGTACACTTTCGGACCTCGGCTGGTCGAAGATGATATCAAGCTACTGGCCGCGTTTGTCAAGTCGCAGGCTGAAAATGGCTGGCCTAAGATCGACGGCGATGGAGATTAGTTCACCGACACAACAGAGACAAGGYGGCAAACATTGTTCAGTGAACCAGTGTATAGTTTGGAGTCAGGTGTYCTGTTTGCATCTGTAAAATCCCAACGRAATCCATACAAATAAAARGTAGCTTAGGCCGTKTTTAGATTTCAACTTTTTTTTCAAACTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4207#0 ACGGCCGACGGGGGAGGAAGAAGCAGCAGCTCCATGCACCGGCTTCCTCTGGCCTCACGG 60
consensus_4207#1 ------------------------------------------------------------
consensus_4207#0 CCACCGGGTCCGCATCGCGCGGCGGCCGCCGCTCATCGCGCTCCCCAGAGGACGACGACG 120
consensus_4207#1 ------------------------------------------------------------
consensus_4207#0 GCGTGCTGCGGCCGCCTGAAGCAGGAGGCGACGCCGTCATTTGCCTCTCTCGCCGTCGCT 180
consensus_4207#1 ------------------------------------------------------------
consensus_4207#0 GCGTCTGCGGCAGCAGAGCGCGCGGCCACGCCGCTGTTGGCCGCGGCGGCGCTCCTCCTT 240
consensus_4207#1 ------------------------------------------------------------
consensus_4207#0 TCTGCCGCATCTCCTGGCTTCCTAGCTTCCACACCATCAGCTTTTGCTCAATCCGAAGGC 300
consensus_4207#1 ------------------------------------------------------------
consensus_4207#0 GCAGCGCTGTTCCGGAAGGCGTGCATCGGCTGCCATGATATGGGAGGAAATATCCTACAG 360
consensus_4207#1 ------------------------------------------------------------
consensus_4207#0 CCGGTAAGCTTCTGAAACCATTACTCGATGGCCGGACACAAATTTTCAACCTTTTTATTA 420
consensus_4207#1 ----------------------------------------------CGAGCTTGCCATGA 14
* * *** ** *
consensus_4207#0 GCTTGCTG-ATTTGTCACGTA-CAGGGCGCCACTCTGTACATGAAGGATCTTGAGAGAAA 478
consensus_4207#1 TATGGGAGGAAATATCCTACAGCCGGGCGCCACTCTGTACATGAAGGATCTTGAGAGAAA 74
* * * * * ** * * ************************************
consensus_4207#0 TGGAGTTGCCACGGAGGACGAGCTATACAATATAACGTACTACGGGAAGGGAAGAATGCC 538
consensus_4207#1 TGGAGTTGCCACGGAGGACGAGCTATACAATATAACGTACTACGGGAAGGGAAGAATGCC 134
************************************************************
consensus_4207#0 GGGCTTCGGAGAAAAATGCACCCCGAGAGGGCAGTGCACTTTCGGACCTCGGCTGGTCGA 598
consensus_4207#1 GGGCTTCGGAGAAAAATGCACCCCGAGAGGGCAGTACACTTTCGGACCTCGGCTGGTCGA 194
*********************************** ************************
consensus_4207#0 AGATGATATCAAGCTACTGGCCGCGTTTGTCAAGTCGCAGGCTGAAAATGGCTGGCCTAA 658
consensus_4207#1 AGATGATATCAAGCTACTGGCCGCGTTTGTCAAGTCGCAGGCTGAAAATGGCTGGCCTAA 254
************************************************************
consensus_4207#0 GATCGACGGCGATGGAGATTAGTTCACCGACACAACAGAGACAAG-TGGCAAACATTGTT 717
consensus_4207#1 GATCGACGGCGATGGAGATTAGTTCACCGACACAACAGAGACAAGGYGGCAAACATTGTT 314
********************************************* *************
consensus_4207#0 CAGTGAACCAGTGTATAGTTTGGAGTCAGGTGTGCTGTTTGCATCTGTAAAATCCCAACG 777
consensus_4207#1 CAGTGAACCAGTGTATAGTTTGGAGTCAGGTGTYCTGTTTGCATCTGTAAAATCCCAACG 374
********************************* **************************
consensus_4207#0 AAATCCATACAAATAAAAAGTAGCTTAGGCCGTGTTTAGATTTCAACTTTTTTTTCAAAC 837
consensus_4207#1 RAATCCATACAAATAAAARGTAGCTTAGGCCGTKTTTAGATTTCAACTTTTTTTTCAAAC 434
***************** ************** **************************
consensus_4207#0 TTCCAACTTTTTCGTCACATCAAATGTTTGGACACATTTATGGAGCATCAAATGTGGACG 897
consensus_4207#1 TCC--------------------------------------------------------- 437
* *
consensus_4207#0 AAAAAAACCCAATTGCACAATCCGACTGTAAA 929
consensus_4207#1 --------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||