These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4207#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 929 fasta sequence [ACGGCCGACGGGGGAGGAAGAAGCAGCAGCTCCATGCACCGGCTTCCTCTGGCCTCACGGCCACCGGGTCCGCATCGCGCGGCGGCCGCCGCTCATCGCGCTCCCCAGAGGACGACGACGGCGTGCTGCGGCCGCCTGAAGCAGGAGGCGACGCCGTCATTTGCCTCTCTCGCCGTCGCTGCGTCTGCGGCAGCAGAGCGCGCGGCCACGCCGCTGTTGGCCGCGGCGGCGCTCCTCCTTTCTGCCGCATCTCCTGGCTTCCTAGCTTCCACACCATCAGCTTTTGCTCAATCCGAAGGCGCAGCGCTGTTCCGGAAGGCGTGCATCGGCTGCCATGATATGGGAGGAAATATCCTACAGCCGGTAAGCTTCTGAAACCATTACTCGATGGCCGGACACAAATTTTCAACCTTTTTATTAGCTTGCTGATTTGTCACGTACAGGGCGCCACTCTGTACATGAAGGATCTTGAGAGAAATGGAGTTGCCACGGAGGACGAGCTATACAATATAACGTACTACGGGAAGGGAAGAATGCCGGGCTTCGGAGAAAAATGCACCCCGAGAGGGCAGTGCACTTTCGGACCTCGGCTGGTCGAAGATGATATCAAGCTACTGGCCGCGTTTGTCAAGTCGCAGGC-TGAAAATGGC-TGGCCTAAGATCGACGGCGATGGAGATTAGTTCA-CCGACACAACAGAGACAAGTGGCAAACATTGTTCAGTGAACCAGTGTATAG-TTTGGAGTCAGGTGTGCTGTTTGCATCTGTAAAATCCCAACGAAATCCATACAAATAAAAAGTAGCTT-AGGCCGTGTTTA-GATTTCAACTTTTTTTTCAAACTT-CCAACTTTTTCGTCACATCAAATGTTTGGACACATTTATGGAGCATCAAATGTGGACGAAAAAAACCCAATTGCACAATCCGACTGTAAA] [+] EMBL AK068245 [ACGGCCGACGGGGGAGGAAGAAGCAGCAGCTCCATGCACCGGCTTCCTCTGGCCTCACGGCCACCGGGTCCGCATCGCGCGGCGGCCGCCGCTCATCGCGCTCCCCAGAGGACGACGACGGCGTGCTGCGGCCGCCTGAAGCAGGAGGCGACGCCGTCATTTGCCTCTCTCGCCGTCGCTGCGTCTGCGGCAGCAGAGCGCGCGGCCACGCCGCTGTTGGCCGCGGCGGCGCTCCTCCTTTCTGCCGCATCTCCTGGCTTCCTAGCTTCCACACCATCAGCTTTTGCTCAATCCGAAGGCGCAGCGCTGTTCCGGAAGGCGTGCATCGGCTGCCATGATATGGGAGGAAATATCCTACAGCCGGTAAGCTTCTGAAACCATTACTCGATGGCCGGACACAAATTTTCAACCTTTTTATTAGCTTGCTGATTTGTCACGTACAGGGCGCCACTCTGTACATGAAGGATCTTGAGAGAAATGGAGTTGCCACGGAGGACGAGCTATACAATATAACGTACTACGGGAAGGGAAGAATGCCGGGCTTCGGAGAAAAATGCACCCCGAGAGGGCAGTGCACTTTCGGACCTCGGCTGGTCGAAGATGATATCAAGCTACTGGCCGCGTTTGTCAAGTCGCAGGC TGAAAATGGC TGGCCTAAGATCGACGGCGATGGAGATTAGTTCA CCGACACAACAGAGACAAGTGGCAAACATTGTTCAGTGAACCAGTGTATAG TTTGGAGTCAGGTGTGCTGTTTGCATCTGTAAAATCCCAACGAAATCCATACAAATAAAAAGTAGCTT AGGCCGTGTTTA GATTTCAACTTTTTTTTCAAACTT CCAACTTTTTCGTCACATCAAATGTTTGGACACATTTATGGAGCATCAAATGTGGACGAAAAAAACCCAATTGCACAATCCGACTGTAAA] [+] EMBL C73700 [ CGCCACTCTGTACATGAAGGATCTTGAGAGAAATGGAGTTGCCACGGAGGACGAGCTATACAATATAACGTACTACGGGAAGGGAAGAATGCCGGGCTTCGGAGAAAAATGCACCCCGAGAGGGCAGTGCACTTTCGGACCTCGGCTGGTCGAAGATGATATCAAGCTACTGGCCGCGTTTGNNTTTTCGCAGGCTTGAAAATGGCTTGGCCTAAGATCGACGGCGATGGAGATTAGTTCACCCGACACAACAGAGACAAGTGGCAAACATTGTTCAGTG ACCAGTGTATAGTTTTNGAGTCAGGTGTGCTGTTTTCATCTGTAAAATCCCAACGGAATCCATACAAATAAAAAGTAGCTTAAGGCC NGTTTAGGATTTCAACTTTTTTTTCAAACTTNCCACTTTTTTCG CACATCAAATGTTTGG CACATTTATNGGGCATCAAATt ] consensusID : consensus_4207#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence [CGAGCTTGCCATGATATGGGAGGAAATATCCTACAGCCGGGCGCCACTCTGTACATGAAGGATCTTGAGAGAAATGGAGTTGCCACGGAGGACGAGCTATACAATATAACGTACTACGGGAAGGGAAGAATGCCGGGCTTCGGAGAAAAATGCACCCCGAGAGGGCAGTACACTTTCGGACCTCGGCTGGTCGAAGATGATATCAAGCTACTGGCCGCGTTTGTCAAGTCGCAGGCTGAAAATGGCTGGCCTAAGATCGACGGCGATGGAGATTAGTTCACCGACACAACAGAGACAAGGYGGCAAACATTGTTCAGTGAACCAGTGTATAGTTTGGAGTCAGGTGTYCTGTTTGCATCTGTAAAATCCCAACGRAATCCATACAAATAAAARGTAGCTTAGGCCGTKTTTAGATTTCAACTTTTTTTTCAAACTCC] [+] EMBL BE229553 [CGAGCTTGCCATGATATGGGAGGAAATATCCTACAGCCGGGCGCCACTCTGTACATGAAGGATCTTGAGAGAAATGGAGTTGCCACGGAGGACGAGCTATACAATATAACGTACTACGGGAAGGGAAGAATGCCGGGCTTCGGAGAAAAATGCACCCCGAGAGGGCAGTACACTTTCGGACCTCGGCTGGTCGAAGATGATATCAAGCTACTGGCCGCGTTTGTCAAGTCGCAGGCTGAAAATGGCTGGCCTAAGATCGACGGCGATGGAGATTAGTTCACCGACACAACAGAGACAAGGYGGCAAACATTGTTCAGTGAACCAGTGTATAGTTTGGAGTCAGGTGTYCTGTTTGCATCTGTAAAATCCCAACGRAATCCATACAAATAAAARGTAGCTTAGGCCGTKTTTAGATTTCAACTTTTTTTTCAAACTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4207#0 ACGGCCGACGGGGGAGGAAGAAGCAGCAGCTCCATGCACCGGCTTCCTCTGGCCTCACGG 60 consensus_4207#1 ------------------------------------------------------------ consensus_4207#0 CCACCGGGTCCGCATCGCGCGGCGGCCGCCGCTCATCGCGCTCCCCAGAGGACGACGACG 120 consensus_4207#1 ------------------------------------------------------------ consensus_4207#0 GCGTGCTGCGGCCGCCTGAAGCAGGAGGCGACGCCGTCATTTGCCTCTCTCGCCGTCGCT 180 consensus_4207#1 ------------------------------------------------------------ consensus_4207#0 GCGTCTGCGGCAGCAGAGCGCGCGGCCACGCCGCTGTTGGCCGCGGCGGCGCTCCTCCTT 240 consensus_4207#1 ------------------------------------------------------------ consensus_4207#0 TCTGCCGCATCTCCTGGCTTCCTAGCTTCCACACCATCAGCTTTTGCTCAATCCGAAGGC 300 consensus_4207#1 ------------------------------------------------------------ consensus_4207#0 GCAGCGCTGTTCCGGAAGGCGTGCATCGGCTGCCATGATATGGGAGGAAATATCCTACAG 360 consensus_4207#1 ------------------------------------------------------------ consensus_4207#0 CCGGTAAGCTTCTGAAACCATTACTCGATGGCCGGACACAAATTTTCAACCTTTTTATTA 420 consensus_4207#1 ----------------------------------------------CGAGCTTGCCATGA 14 * * *** ** * consensus_4207#0 GCTTGCTG-ATTTGTCACGTA-CAGGGCGCCACTCTGTACATGAAGGATCTTGAGAGAAA 478 consensus_4207#1 TATGGGAGGAAATATCCTACAGCCGGGCGCCACTCTGTACATGAAGGATCTTGAGAGAAA 74 * * * * * ** * * ************************************ consensus_4207#0 TGGAGTTGCCACGGAGGACGAGCTATACAATATAACGTACTACGGGAAGGGAAGAATGCC 538 consensus_4207#1 TGGAGTTGCCACGGAGGACGAGCTATACAATATAACGTACTACGGGAAGGGAAGAATGCC 134 ************************************************************ consensus_4207#0 GGGCTTCGGAGAAAAATGCACCCCGAGAGGGCAGTGCACTTTCGGACCTCGGCTGGTCGA 598 consensus_4207#1 GGGCTTCGGAGAAAAATGCACCCCGAGAGGGCAGTACACTTTCGGACCTCGGCTGGTCGA 194 *********************************** ************************ consensus_4207#0 AGATGATATCAAGCTACTGGCCGCGTTTGTCAAGTCGCAGGCTGAAAATGGCTGGCCTAA 658 consensus_4207#1 AGATGATATCAAGCTACTGGCCGCGTTTGTCAAGTCGCAGGCTGAAAATGGCTGGCCTAA 254 ************************************************************ consensus_4207#0 GATCGACGGCGATGGAGATTAGTTCACCGACACAACAGAGACAAG-TGGCAAACATTGTT 717 consensus_4207#1 GATCGACGGCGATGGAGATTAGTTCACCGACACAACAGAGACAAGGYGGCAAACATTGTT 314 ********************************************* ************* consensus_4207#0 CAGTGAACCAGTGTATAGTTTGGAGTCAGGTGTGCTGTTTGCATCTGTAAAATCCCAACG 777 consensus_4207#1 CAGTGAACCAGTGTATAGTTTGGAGTCAGGTGTYCTGTTTGCATCTGTAAAATCCCAACG 374 ********************************* ************************** consensus_4207#0 AAATCCATACAAATAAAAAGTAGCTTAGGCCGTGTTTAGATTTCAACTTTTTTTTCAAAC 837 consensus_4207#1 RAATCCATACAAATAAAARGTAGCTTAGGCCGTKTTTAGATTTCAACTTTTTTTTCAAAC 434 ***************** ************** ************************** consensus_4207#0 TTCCAACTTTTTCGTCACATCAAATGTTTGGACACATTTATGGAGCATCAAATGTGGACG 897 consensus_4207#1 TCC--------------------------------------------------------- 437 * * consensus_4207#0 AAAAAAACCCAATTGCACAATCCGACTGTAAA 929 consensus_4207#1 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||