Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4207 cluster # 4207       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4207#0 length = 929 sequences # 2  
consensus_4207#1 length = 437 sequences # 1  

consensusID : consensus_4207#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 929
fasta sequence
                              [ACGGCCGACGGGGGAGGAAGAAGCAGCAGCTCCATGCACCGGCTTCCTCTGGCCTCACGGCCACCGGGTCCGCATCGCGCGGCGGCCGCCGCTCATCGCGCTCCCCAGAGGACGACGACGGCGTGCTGCGGCCGCCTGAAGCAGGAGGCGACGCCGTCATTTGCCTCTCTCGCCGTCGCTGCGTCTGCGGCAGCAGAGCGCGCGGCCACGCCGCTGTTGGCCGCGGCGGCGCTCCTCCTTTCTGCCGCATCTCCTGGCTTCCTAGCTTCCACACCATCAGCTTTTGCTCAATCCGAAGGCGCAGCGCTGTTCCGGAAGGCGTGCATCGGCTGCCATGATATGGGAGGAAATATCCTACAGCCGGTAAGCTTCTGAAACCATTACTCGATGGCCGGACACAAATTTTCAACCTTTTTATTAGCTTGCTGATTTGTCACGTACAGGGCGCCACTCTGTACATGAAGGATCTTGAGAGAAATGGAGTTGCCACGGAGGACGAGCTATACAATATAACGTACTACGGGAAGGGAAGAATGCCGGGCTTCGGAGAAAAATGCACCCCGAGAGGGCAGTGCACTTTCGGACCTCGGCTGGTCGAAGATGATATCAAGCTACTGGCCGCGTTTGTCAAGTCGCAGGC-TGAAAATGGC-TGGCCTAAGATCGACGGCGATGGAGATTAGTTCA-CCGACACAACAGAGACAAGTGGCAAACATTGTTCAGTGAACCAGTGTATAG-TTTGGAGTCAGGTGTGCTGTTTGCATCTGTAAAATCCCAACGAAATCCATACAAATAAAAAGTAGCTT-AGGCCGTGTTTA-GATTTCAACTTTTTTTTCAAACTT-CCAACTTTTTCGTCACATCAAATGTTTGGACACATTTATGGAGCATCAAATGTGGACGAAAAAAACCCAATTGCACAATCCGACTGTAAA]

[+] EMBL AK068245             [ACGGCCGACGGGGGAGGAAGAAGCAGCAGCTCCATGCACCGGCTTCCTCTGGCCTCACGGCCACCGGGTCCGCATCGCGCGGCGGCCGCCGCTCATCGCGCTCCCCAGAGGACGACGACGGCGTGCTGCGGCCGCCTGAAGCAGGAGGCGACGCCGTCATTTGCCTCTCTCGCCGTCGCTGCGTCTGCGGCAGCAGAGCGCGCGGCCACGCCGCTGTTGGCCGCGGCGGCGCTCCTCCTTTCTGCCGCATCTCCTGGCTTCCTAGCTTCCACACCATCAGCTTTTGCTCAATCCGAAGGCGCAGCGCTGTTCCGGAAGGCGTGCATCGGCTGCCATGATATGGGAGGAAATATCCTACAGCCGGTAAGCTTCTGAAACCATTACTCGATGGCCGGACACAAATTTTCAACCTTTTTATTAGCTTGCTGATTTGTCACGTACAGGGCGCCACTCTGTACATGAAGGATCTTGAGAGAAATGGAGTTGCCACGGAGGACGAGCTATACAATATAACGTACTACGGGAAGGGAAGAATGCCGGGCTTCGGAGAAAAATGCACCCCGAGAGGGCAGTGCACTTTCGGACCTCGGCTGGTCGAAGATGATATCAAGCTACTGGCCGCGTTTGTCAAGTCGCAGGC TGAAAATGGC TGGCCTAAGATCGACGGCGATGGAGATTAGTTCA CCGACACAACAGAGACAAGTGGCAAACATTGTTCAGTGAACCAGTGTATAG TTTGGAGTCAGGTGTGCTGTTTGCATCTGTAAAATCCCAACGAAATCCATACAAATAAAAAGTAGCTT AGGCCGTGTTTA GATTTCAACTTTTTTTTCAAACTT CCAACTTTTTCGTCACATCAAATGTTTGGACACATTTATGGAGCATCAAATGTGGACGAAAAAAACCCAATTGCACAATCCGACTGTAAA]
[+] EMBL C73700               [                                                                                                                                                                                                                                                                                                                                                                                                                                                             CGCCACTCTGTACATGAAGGATCTTGAGAGAAATGGAGTTGCCACGGAGGACGAGCTATACAATATAACGTACTACGGGAAGGGAAGAATGCCGGGCTTCGGAGAAAAATGCACCCCGAGAGGGCAGTGCACTTTCGGACCTCGGCTGGTCGAAGATGATATCAAGCTACTGGCCGCGTTTGNNTTTTCGCAGGCTTGAAAATGGCTTGGCCTAAGATCGACGGCGATGGAGATTAGTTCACCCGACACAACAGAGACAAGTGGCAAACATTGTTCAGTG ACCAGTGTATAGTTTTNGAGTCAGGTGTGCTGTTTTCATCTGTAAAATCCCAACGGAATCCATACAAATAAAAAGTAGCTTAAGGCC NGTTTAGGATTTCAACTTTTTTTTCAAACTTNCCACTTTTTTCG CACATCAAATGTTTGG CACATTTATNGGGCATCAAATt                                      ]


>consensus_4207#0 ACGGCCGACGGGGGAGGAAGAAGCAGCAGCTCCATGCACCGGCTTCCTCTGGCCTCACGG CCACCGGGTCCGCATCGCGCGGCGGCCGCCGCTCATCGCGCTCCCCAGAGGACGACGACG GCGTGCTGCGGCCGCCTGAAGCAGGAGGCGACGCCGTCATTTGCCTCTCTCGCCGTCGCT GCGTCTGCGGCAGCAGAGCGCGCGGCCACGCCGCTGTTGGCCGCGGCGGCGCTCCTCCTT TCTGCCGCATCTCCTGGCTTCCTAGCTTCCACACCATCAGCTTTTGCTCAATCCGAAGGC GCAGCGCTGTTCCGGAAGGCGTGCATCGGCTGCCATGATATGGGAGGAAATATCCTACAG CCGGTAAGCTTCTGAAACCATTACTCGATGGCCGGACACAAATTTTCAACCTTTTTATTA GCTTGCTGATTTGTCACGTACAGGGCGCCACTCTGTACATGAAGGATCTTGAGAGAAATG GAGTTGCCACGGAGGACGAGCTATACAATATAACGTACTACGGGAAGGGAAGAATGCCGG GCTTCGGAGAAAAATGCACCCCGAGAGGGCAGTGCACTTTCGGACCTCGGCTGGTCGAAG ATGATATCAAGCTACTGGCCGCGTTTGTCAAGTCGCAGGCTGAAAATGGCTGGCCTAAGA TCGACGGCGATGGAGATTAGTTCACCGACACAACAGAGACAAGTGGCAAACATTGTTCAG TGAACCAGTGTATAGTTTGGAGTCAGGTGTGCTGTTTGCATCTGTAAAATCCCAACGAAA TCCATACAAATAAAAAGTAGCTTAGGCCGTGTTTAGATTTCAACTTTTTTTTCAAACTTC CAACTTTTTCGTCACATCAAATGTTTGGACACATTTATGGAGCATCAAATGTGGACGAAA AAAACCCAATTGCACAATCCGACTGTAAA



consensusID : consensus_4207#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence
                              [CGAGCTTGCCATGATATGGGAGGAAATATCCTACAGCCGGGCGCCACTCTGTACATGAAGGATCTTGAGAGAAATGGAGTTGCCACGGAGGACGAGCTATACAATATAACGTACTACGGGAAGGGAAGAATGCCGGGCTTCGGAGAAAAATGCACCCCGAGAGGGCAGTACACTTTCGGACCTCGGCTGGTCGAAGATGATATCAAGCTACTGGCCGCGTTTGTCAAGTCGCAGGCTGAAAATGGCTGGCCTAAGATCGACGGCGATGGAGATTAGTTCACCGACACAACAGAGACAAGGYGGCAAACATTGTTCAGTGAACCAGTGTATAGTTTGGAGTCAGGTGTYCTGTTTGCATCTGTAAAATCCCAACGRAATCCATACAAATAAAARGTAGCTTAGGCCGTKTTTAGATTTCAACTTTTTTTTCAAACTCC]

[+] EMBL BE229553             [CGAGCTTGCCATGATATGGGAGGAAATATCCTACAGCCGGGCGCCACTCTGTACATGAAGGATCTTGAGAGAAATGGAGTTGCCACGGAGGACGAGCTATACAATATAACGTACTACGGGAAGGGAAGAATGCCGGGCTTCGGAGAAAAATGCACCCCGAGAGGGCAGTACACTTTCGGACCTCGGCTGGTCGAAGATGATATCAAGCTACTGGCCGCGTTTGTCAAGTCGCAGGCTGAAAATGGCTGGCCTAAGATCGACGGCGATGGAGATTAGTTCACCGACACAACAGAGACAAGGYGGCAAACATTGTTCAGTGAACCAGTGTATAGTTTGGAGTCAGGTGTYCTGTTTGCATCTGTAAAATCCCAACGRAATCCATACAAATAAAARGTAGCTTAGGCCGTKTTTAGATTTCAACTTTTTTTTCAAACTCC]


>consensus_4207#1 CGAGCTTGCCATGATATGGGAGGAAATATCCTACAGCCGGGCGCCACTCTGTACATGAAG GATCTTGAGAGAAATGGAGTTGCCACGGAGGACGAGCTATACAATATAACGTACTACGGG AAGGGAAGAATGCCGGGCTTCGGAGAAAAATGCACCCCGAGAGGGCAGTACACTTTCGGA CCTCGGCTGGTCGAAGATGATATCAAGCTACTGGCCGCGTTTGTCAAGTCGCAGGCTGAA AATGGCTGGCCTAAGATCGACGGCGATGGAGATTAGTTCACCGACACAACAGAGACAAGG YGGCAAACATTGTTCAGTGAACCAGTGTATAGTTTGGAGTCAGGTGTYCTGTTTGCATCT GTAAAATCCCAACGRAATCCATACAAATAAAARGTAGCTTAGGCCGTKTTTAGATTTCAA CTTTTTTTTCAAACTCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4207#0      ACGGCCGACGGGGGAGGAAGAAGCAGCAGCTCCATGCACCGGCTTCCTCTGGCCTCACGG 60
consensus_4207#1      ------------------------------------------------------------
                                                                                  

consensus_4207#0      CCACCGGGTCCGCATCGCGCGGCGGCCGCCGCTCATCGCGCTCCCCAGAGGACGACGACG 120
consensus_4207#1      ------------------------------------------------------------
                                                                                  

consensus_4207#0      GCGTGCTGCGGCCGCCTGAAGCAGGAGGCGACGCCGTCATTTGCCTCTCTCGCCGTCGCT 180
consensus_4207#1      ------------------------------------------------------------
                                                                                  

consensus_4207#0      GCGTCTGCGGCAGCAGAGCGCGCGGCCACGCCGCTGTTGGCCGCGGCGGCGCTCCTCCTT 240
consensus_4207#1      ------------------------------------------------------------
                                                                                  

consensus_4207#0      TCTGCCGCATCTCCTGGCTTCCTAGCTTCCACACCATCAGCTTTTGCTCAATCCGAAGGC 300
consensus_4207#1      ------------------------------------------------------------
                                                                                  

consensus_4207#0      GCAGCGCTGTTCCGGAAGGCGTGCATCGGCTGCCATGATATGGGAGGAAATATCCTACAG 360
consensus_4207#1      ------------------------------------------------------------
                                                                                  

consensus_4207#0      CCGGTAAGCTTCTGAAACCATTACTCGATGGCCGGACACAAATTTTCAACCTTTTTATTA 420
consensus_4207#1      ----------------------------------------------CGAGCTTGCCATGA 14
                                                                    * * ***   ** *

consensus_4207#0      GCTTGCTG-ATTTGTCACGTA-CAGGGCGCCACTCTGTACATGAAGGATCTTGAGAGAAA 478
consensus_4207#1      TATGGGAGGAAATATCCTACAGCCGGGCGCCACTCTGTACATGAAGGATCTTGAGAGAAA 74
                        * *  * *  * **    * * ************************************

consensus_4207#0      TGGAGTTGCCACGGAGGACGAGCTATACAATATAACGTACTACGGGAAGGGAAGAATGCC 538
consensus_4207#1      TGGAGTTGCCACGGAGGACGAGCTATACAATATAACGTACTACGGGAAGGGAAGAATGCC 134
                      ************************************************************

consensus_4207#0      GGGCTTCGGAGAAAAATGCACCCCGAGAGGGCAGTGCACTTTCGGACCTCGGCTGGTCGA 598
consensus_4207#1      GGGCTTCGGAGAAAAATGCACCCCGAGAGGGCAGTACACTTTCGGACCTCGGCTGGTCGA 194
                      *********************************** ************************

consensus_4207#0      AGATGATATCAAGCTACTGGCCGCGTTTGTCAAGTCGCAGGCTGAAAATGGCTGGCCTAA 658
consensus_4207#1      AGATGATATCAAGCTACTGGCCGCGTTTGTCAAGTCGCAGGCTGAAAATGGCTGGCCTAA 254
                      ************************************************************

consensus_4207#0      GATCGACGGCGATGGAGATTAGTTCACCGACACAACAGAGACAAG-TGGCAAACATTGTT 717
consensus_4207#1      GATCGACGGCGATGGAGATTAGTTCACCGACACAACAGAGACAAGGYGGCAAACATTGTT 314
                      *********************************************  *************

consensus_4207#0      CAGTGAACCAGTGTATAGTTTGGAGTCAGGTGTGCTGTTTGCATCTGTAAAATCCCAACG 777
consensus_4207#1      CAGTGAACCAGTGTATAGTTTGGAGTCAGGTGTYCTGTTTGCATCTGTAAAATCCCAACG 374
                      ********************************* **************************

consensus_4207#0      AAATCCATACAAATAAAAAGTAGCTTAGGCCGTGTTTAGATTTCAACTTTTTTTTCAAAC 837
consensus_4207#1      RAATCCATACAAATAAAARGTAGCTTAGGCCGTKTTTAGATTTCAACTTTTTTTTCAAAC 434
                       ***************** ************** **************************

consensus_4207#0      TTCCAACTTTTTCGTCACATCAAATGTTTGGACACATTTATGGAGCATCAAATGTGGACG 897
consensus_4207#1      TCC--------------------------------------------------------- 437
                      * *                                                         

consensus_4207#0      AAAAAAACCCAATTGCACAATCCGACTGTAAA 929
consensus_4207#1      --------------------------------
                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)