These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4211#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1213 fasta sequence [AAAATAGTAGTCGTCCCCTTCTTGGCGCGCCGCCGCAGCAACAGCTGGCGCGCGAGGCTGCTCGGATCTATCCGCGGCCGTGGAACCGATGGAGCTCGACGACGCGTCTCGCCACTGGATTCGGCAGGATGGGATTTGGATGCAAGCACTACAGGAGGAGGTGCACGATCCGGGCGCCGTGCTGCAACGACGTCTTCCACTGCCGCCATTGCCACAACGAGTCCACGAAAGACGGCCACGAGCTCGATCGGCACGCGGTTGAATCGGTTATCTGTCTCGTCTGTGACACCGAACAGCCGGTTGCGCAAGTGTGCTACAACTGCGGTGTTTGCATGGGCGAGTACTTATGCAGCGCGTGCAAATTCTTCGACCACGACGTTGACAGGGAACATCTTCACTGCCAAGATTGCGGCATCTGCATAGTTGGAGGGAAGGATAACTTCTTCCACTGCGAAAAATGTGGATCATGCTACTCGGTCAGCCTGCGCGATAGCACTGGTGCATCGAGAACTCCATGAAGAACAACTGCCCCATCAGCTACGAGTATCTGTTTGACTCTCTAAGGAGACGTCCGTGCTCAGATGTGGGCACACGATGCACCTGCAATGCTCCACGAGATGCTGAAGCACGACAAGTAATCGCCCATGCTGTGCTGATCTGTTTCCATGTGGCTCTTTCTTTCTTAGTTTGTGTCTCNACTTTGTGTGCTAGATTAGTCATCTCTCTCGTGTGATCTTGTTCTTCTTGGACGCCTGATAATTGTAGGTTCTCTTGTCCCATATGCTCGATGCCTATCTTTGACATGGACAAGTTCTTGAGGGCTTTGGACGCTGAGATTGAAGCAAATATGCTGCACATAGATTACATGGGAAAGGGATGGATCGTGTGCAACGACTGCAGGGACACGACGCAGGTGTACGCGAGGGTGGCAGGGCACAAGTACTGCCATTGCCAGTCTCTCAACACATGCAGGGTGGCTGCCCCGGTGCTCCCTGCTTAATTACATTGAGTAAATTTCATATAAAATTCACGCTGCAAATGCATGTCAAGCACCGGCAGCGATCAATATTATTGATTTATACTTAGTATTCAGTAGTACCCGCTGGGTTAATTTAAGTAGCCAATTAAGTGTATTTTCAGTCCAACATGAACTGCATGGGTCACATCTTGTATGCGAGATTATACACGATTTTATGTAACAAAGCAAGGTGAA] [+] EMBL AK073680 [AAAATAGTAGTCGTCCCCTTCTTGGCGCGCCGCCGCAGCAACAGCTGGCGCGCGAGGCTGCTCGGATCTATCCGCGGCCGTGGAACCGATGGAGCTCGACGACGCGTCTCGCCACTGGATTCGGCAGGATGGGATTTGGATGCAAGCACTACAGGAGGAGGTGCACGATCCGGGCGCCGTGCTGCAACGACGTCTTCCACTGCCGCCATTGCCACAACGAGTCCACGAAAGACGGCCACGAGCTCGATCGGCACGCGGTTGAATCGGTTATCTGTCTCGTCTGTGACACCGAACAGCCGGTTGCGCAAGTGTGCTACAACTGCGGTGTTTGCATGGGCGAGTACTTATGCAGCGCGTGCAAATTCTTCGACCACGACGTTGACAGGGAACATCTTCACTGCCAAGATTGCGGCATCTGCATAGTTGGAGGGAAGGATAACTTCTTCCACTGCGAAAAATGTGGATCATGCTACTCGGTCAGCCTGCGCGATAGCACTGGTGCATCGAGAACTCCATGAAGAACAACTGCCCCATCAGCTACGAGTATCTGTTTGACTCTCTAAGGAGACGTCCGTGCTCAGATGTGGGCACACGATGCACCTGCAATGCTCCACGAGATGCTGAAGCACGACAAGTAATCGCCCATGCTGTGCTGATCTGTTTCCATGTGGCTCTTTCTTTCTTAGTTTGTGTCTCNACTTTGTGTGCTAGATTAGTCATCTCTCTCGTGTGATCTTGTTCTTCTTGGACGCCTGATAATTGTAGGTTCTCTTGTCCCATATGCTCGATGCCTATCTTTGACATGGACAAGTTCTTGAGGGCTTTGGACGCTGAGATTGAAGCAAATATGCTGCACATAGATTACATGGGAAAGGGATGGATCGTGTGCAACGACTGCAGGGACACGACGCAGGTGTACGCGAGGGTGGCAGGGCACAAGTACTGCCATTGCCAGTCTCTCAACACATGCAGGGTGGCTGCCCCGGTGCTCCCTGCTTAATTACATTGAGTAAATTTCATATAAAATTCACGCTGCAAATGCATGTCAAGCACCGGCAGCGATCAATATTATTGATTTATACTTAGTATTCAGTAGTACCCGCTGGGTTAATTTAAGTAGCCAATTAAGTGTATTTTCAGTCCAACATGAACTGCATGGGTCACATCTTGTATGCGAGATTATACACGATTTTATGTAACAAAGCAAGGTGAA] consensusID : consensus_4211#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1047 fasta sequence [CGGCGCGCGAGGCTGCTCGGATCTCGCCGCGGCCATCGAACCGATGGAGCTCGACGACGCGTCTCGCCACGGATTCGGCAGGATGGGATTTGGATGCAAGCACTACAGGAGGAGGTGCAGGATCCGGGCGCCGTGCTGCAACGACGTCTTCCACTGCCGCCATTGCCACAACGAGTCCACGAAAGACGGCCACGAGCTCGATCGGCACGCGGTTGAATCGGTTATCTGTCTCGTCTGTGACACCGAACAGCCGGTTGCGCAAGTGTGCTACAACTGCGGCGTTTGCATGGGCGAGTACTTCTGCAGCGCGTGCAAATTCTTCGACGACGACGTTGACAGGGAACACTTCCACTGCCAAGATTGCGGCATCTGCAGAGTTGGAGGGAAGGATAACTTCTTCCACTGCGAANAATGTGGATCATGCTACTCGGTCAGCCTGCGCGACAAGCACTGCTGCATCGAGAACTCCATGAAGAACAACTGCCCCATCTGTTACGAGTATCTGTTTGACTCTCTAAGGGAGACGTCCGTGCTCAGATGTGGGCACACGATGCACCTGCNATGCTTCCACGAGATGCTGAAGCACGACNAGTTCTCTTGTCCCATATGCTCGATGCCTATCTTTGACATGGACAAGTTCTTGAGGGCTTTGGACGCTGAGATTGAAGCAAATATGCTGCACATAGATTACATGGGAAAGGGATGGATCGTGTGCAACGACTGCAGGGACACGACGCAGGTGTACGCGAGGGTGGCAGGGCACAAGTGCTGCCATTGCCAGTCTCACAACACCTGCAGGGTGGCTGCCCCGGTGCTCCCTGCTTAATTAAATTGAGTAAATTTCATATAAAATTCAGCTGCAGATGCTGTCAGCACCGCAGCATCATATTATTGATTTATACTTAGTATTCAGTAGTATTGGCTGGGTTATTTTAAGTAGCCAATTAAGTGTATTTTCAGTCCAACATGAACTGCATGGGTCACATCTTGTATGCGAATTATACACGTTTTATGTAACAAAGCAAGGTGAATTTGAAAGGCGAAGAA] [+] EMBL CA755537 [CGGCGCGCGAGGCTGCTCGGATCTCGCCGCGGCCATCGAACCGATGGAGCTCGACGACGCGTCTCGCCACGGATTCGGCAGGATGGGATTTGGATGCAAGCACTACAGGAGGAGGTGCAGGATCCGGGCGCCGTGCTGCAACGACGTCTTCCACTGCCGCCATTGCCACAACGAGTCCACGAAAGACGGCCACGAGCTCGATCGGCACGCGGTTGAATCGGTTATCTGTCTCGTCTGTGACACCGAACAGCCGGTTGCGCAAGTGTGCTACAACTGCGGCGTTTGCATGGGCGAGTACTTCTGCAGCGCGTGCAAATTCTTCGACGACGACGTTGACAGGGAACACTTCCACTGCCAAGATTGCGGCATCTGCAGAGTTGGAGGGAAGGATAACTTCTTCCACTGCGAANAATGTGGATCATGCTACTCGGTCAGCCTGCGCGACAAGCACTGCTGCATCGAGAACTCCATGAAGAACAACTGCCCCATCTGTTACGAGTATCTGTTTGACTCTCTAAGGGAGACGTCCGTGCTCAGATGTGGGCACACGATGCACCTGCNATGCTTCCACGAGATGCTGAAGCACGACNAGTTCTCTTGTC ] [+] EMBL AK059950 [ CGAGGCTGCTCGGATCTCGCCGCGGCCATCGAACCGATGGAGCTCGACGACGCGTCTCGCCACGGATTCGGCAGGATGGGATTTGGATGCAAGCACTACAGGAGGAGGTGCAGGATCCGGGCGCCGTGCTGCAACGACGTCTTCCACTGCCGCCATTGCCACAACGAGTCCACGAAAGACGGCCACGAGCTCGATCGGCACGCGGTTGAATCGGTTATCTGTCTCGTCTGTGACACCGAACAGCCGGTTGCGCAAGTGTGCTACAACTGCGGCGTTTGCATGGGCGAGTACTTCTGCAGCGCGTGCAAATTCTTCGACGACGACGTTGACAGGGAACACTTCCACTGCCAAGATTGCGGCATCTGCAGAGTTGGAGGGAAGGATAACTTCTTCCACTGCGAAAAATGTGGATCATGCTACTCGGTCAGCCTGCGCGACAAGCACTGCTGCATCGAGAACTCCATGAAGAACAACTGCCCCATCTGTTACGAGTATCTGTTTGACTCTCTAAGGGAGACGTCCGTGCTCAGATGTGGGCACACGATGCACCTGCAATGCTTCCACGAGATGCTGAAGCACGACAAGTTCTCTTGTCCCATATGCTCGATGCCTATCTTTGACATGGACAAGTTCTTGAGGGCTTTGGACGCTGAGATTGAAGCAAATATGCTGCACATAGATTACATGGGAAAGGGATGGATCGTGTGCAACGACTGCAGGGACACGACGCAGGTGTACGCGAGGGTGGCAGGGCACAAGTGCTGCCATTGCCAGTCTCACAACACCTGCAGGGTGGCTGCCCCGGTGCTCCCTGCTTAATTAAATTGAGTAAATTTCATATAAAATTCAGCTGCAGATGCTGTCAGCACCGCAGCATCATATTATTGATTTATACTTAGTATTCAGTAGTATTGGCTGGGTTATTTTAAGTAGCCAATTAAGTGTATTTTCAGTCCAACATGAACTGCATGGGTCACATCTTGTATGCGAATTATACACGTTTTATGTAACAAAGCAAGGTGAATTTGAAAGGCGAAGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4211#0 AAAATAGTAGTCGTCCCCTTCTTGGCGCGCCGCCGCAGCAACAGCTGGCGCGCGAGGCTG 60 consensus_4211#1 ---------------------------------------------CGGCGCGCGAGGCTG 15 ************** consensus_4211#0 CTCGGATCTATCCGCGGCCGTGGAACCGATGGAGCTCGACGACGCGTCTCGCCACTGGAT 120 consensus_4211#1 CTCGGATCTCGCCGCGGCCATCGAACCGATGGAGCTCGACGACGCGTCTCGCCAC-GGAT 74 ********* ******** * ********************************* **** consensus_4211#0 TCGGCAGGATGGGATTTGGATGCAAGCACTACAGGAGGAGGTGCACGATCCGGGCGCCGT 180 consensus_4211#1 TCGGCAGGATGGGATTTGGATGCAAGCACTACAGGAGGAGGTGCAGGATCCGGGCGCCGT 134 ********************************************* ************** consensus_4211#0 GCTGCAACGACGTCTTCCACTGCCGCCATTGCCACAACGAGTCCACGAAAGACGGCCACG 240 consensus_4211#1 GCTGCAACGACGTCTTCCACTGCCGCCATTGCCACAACGAGTCCACGAAAGACGGCCACG 194 ************************************************************ consensus_4211#0 AGCTCGATCGGCACGCGGTTGAATCGGTTATCTGTCTCGTCTGTGACACCGAACAGCCGG 300 consensus_4211#1 AGCTCGATCGGCACGCGGTTGAATCGGTTATCTGTCTCGTCTGTGACACCGAACAGCCGG 254 ************************************************************ consensus_4211#0 TTGCGCAAGTGTGCTACAACTGCGGTGTTTGCATGGGCGAGTACTTATGCAGCGCGTGCA 360 consensus_4211#1 TTGCGCAAGTGTGCTACAACTGCGGCGTTTGCATGGGCGAGTACTTCTGCAGCGCGTGCA 314 ************************* ******************** ************* consensus_4211#0 AATTCTTCGACCACGACGTTGACAGGGAACATCTTCACTGCCAAGATTGCGGCATCTGCA 420 consensus_4211#1 AATTCTTCGACGACGACGTTGACAGGGAACACTTCCACTGCCAAGATTGCGGCATCTGCA 374 *********** ******************* * ************************* consensus_4211#0 TAGTTGGAGGGAAGGATAACTTCTTCCACTGCGAAAAATGTGGATCATGCTACTCGGTCA 480 consensus_4211#1 GAGTTGGAGGGAAGGATAACTTCTTCCACTGCGAANAATGTGGATCATGCTACTCGGTCA 434 ********************************** ************************ consensus_4211#0 GCCTGCGCGATA-GCACTGGTGCATCGAGAACTCCATGAAGAACAACTGCCCCATCAGCT 539 consensus_4211#1 GCCTGCGCGACAAGCACTGCTGCATCGAGAACTCCATGAAGAACAACTGCCCCATCTGTT 494 ********** * ****** ************************************ * * consensus_4211#0 ACGAGTATCTGTTTGACTCTCTAAGG-AGACGTCCGTGCTCAGATGTGGGCACACGATGC 598 consensus_4211#1 ACGAGTATCTGTTTGACTCTCTAAGGGAGACGTCCGTGCTCAGATGTGGGCACACGATGC 554 ************************** ********************************* consensus_4211#0 ACCTGCAATGCT-CCACGAGATGCTGAAGCACGACAAGTAATCGCCCATGCTGTGCTGAT 657 consensus_4211#1 ACCTGCNATGCTTCCACGAGATGCTGAAGCACGACNAGT--------------------- 593 ****** ***** ********************** *** consensus_4211#0 CTGTTTCCATGTGGCTCTTTCTTTCTTAGTTTGTGTCTCNACTTTGTGTGCTAGATTAGT 717 consensus_4211#1 ------------------------------------------------------------ consensus_4211#0 CATCTCTCTCGTGTGATCTTGTTCTTCTTGGACGCCTGATAATTGTAGGTTCTCTTGTCC 777 consensus_4211#1 --------------------------------------------------TCTCTTGTCC 603 ********** consensus_4211#0 CATATGCTCGATGCCTATCTTTGACATGGACAAGTTCTTGAGGGCTTTGGACGCTGAGAT 837 consensus_4211#1 CATATGCTCGATGCCTATCTTTGACATGGACAAGTTCTTGAGGGCTTTGGACGCTGAGAT 663 ************************************************************ consensus_4211#0 TGAAGCAAATATGCTGCACATAGATTACATGGGAAAGGGATGGATCGTGTGCAACGACTG 897 consensus_4211#1 TGAAGCAAATATGCTGCACATAGATTACATGGGAAAGGGATGGATCGTGTGCAACGACTG 723 ************************************************************ consensus_4211#0 CAGGGACACGACGCAGGTGTACGCGAGGGTGGCAGGGCACAAGTACTGCCATTGCCAGTC 957 consensus_4211#1 CAGGGACACGACGCAGGTGTACGCGAGGGTGGCAGGGCACAAGTGCTGCCATTGCCAGTC 783 ******************************************** *************** consensus_4211#0 TCTCAACACATGCAGGGTGGCTGCCCCGGTGCTCCCTGCTTAATTACATTGAGTAAATTT 1017 consensus_4211#1 TCACAACACCTGCAGGGTGGCTGCCCCGGTGCTCCCTGCTTAATTAAATTGAGTAAATTT 843 ** ****** ************************************ ************* consensus_4211#0 CATATAAAATTCACGCTGCAAATGCATGTCAAGCACCGGCAGCGATCAATATTATTGATT 1077 consensus_4211#1 CATATAAAATTCA-GCTGCAGATGC-TGTCA-GCACCG-CAGC-ATCA-TATTATTGATT 897 ************* ****** **** ***** ****** **** **** *********** consensus_4211#0 TATACTTAGTATTCAGTAGTACCCGCTGGGTTAATTTAAGTAGCCAATTAAGTGTATTTT 1137 consensus_4211#1 TATACTTAGTATTCAGTAGTATTGGCTGGGTTATTTTAAGTAGCCAATTAAGTGTATTTT 957 ********************* ********* ************************** consensus_4211#0 CAGTCCAACATGAACTGCATGGGTCACATCTTGTATGCGAGATTATACACGATTTTATGT 1197 consensus_4211#1 CAGTCCAACATGAACTGCATGGGTCACATCTTGTATGCGA-ATTATACACG-TTTTATGT 1015 **************************************** ********** ******** consensus_4211#0 AACAAAGCAAGGTGAA---------------- 1213 consensus_4211#1 AACAAAGCAAGGTGAATTTGAAAGGCGAAGAA 1047 **************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||