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Oryza sativa
cluster # 4211 cluster # 4211       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4211#0 length = 1213 sequences # 1  
consensus_4211#1 length = 1047 sequences # 2  

consensusID : consensus_4211#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1213
fasta sequence
                              [AAAATAGTAGTCGTCCCCTTCTTGGCGCGCCGCCGCAGCAACAGCTGGCGCGCGAGGCTGCTCGGATCTATCCGCGGCCGTGGAACCGATGGAGCTCGACGACGCGTCTCGCCACTGGATTCGGCAGGATGGGATTTGGATGCAAGCACTACAGGAGGAGGTGCACGATCCGGGCGCCGTGCTGCAACGACGTCTTCCACTGCCGCCATTGCCACAACGAGTCCACGAAAGACGGCCACGAGCTCGATCGGCACGCGGTTGAATCGGTTATCTGTCTCGTCTGTGACACCGAACAGCCGGTTGCGCAAGTGTGCTACAACTGCGGTGTTTGCATGGGCGAGTACTTATGCAGCGCGTGCAAATTCTTCGACCACGACGTTGACAGGGAACATCTTCACTGCCAAGATTGCGGCATCTGCATAGTTGGAGGGAAGGATAACTTCTTCCACTGCGAAAAATGTGGATCATGCTACTCGGTCAGCCTGCGCGATAGCACTGGTGCATCGAGAACTCCATGAAGAACAACTGCCCCATCAGCTACGAGTATCTGTTTGACTCTCTAAGGAGACGTCCGTGCTCAGATGTGGGCACACGATGCACCTGCAATGCTCCACGAGATGCTGAAGCACGACAAGTAATCGCCCATGCTGTGCTGATCTGTTTCCATGTGGCTCTTTCTTTCTTAGTTTGTGTCTCNACTTTGTGTGCTAGATTAGTCATCTCTCTCGTGTGATCTTGTTCTTCTTGGACGCCTGATAATTGTAGGTTCTCTTGTCCCATATGCTCGATGCCTATCTTTGACATGGACAAGTTCTTGAGGGCTTTGGACGCTGAGATTGAAGCAAATATGCTGCACATAGATTACATGGGAAAGGGATGGATCGTGTGCAACGACTGCAGGGACACGACGCAGGTGTACGCGAGGGTGGCAGGGCACAAGTACTGCCATTGCCAGTCTCTCAACACATGCAGGGTGGCTGCCCCGGTGCTCCCTGCTTAATTACATTGAGTAAATTTCATATAAAATTCACGCTGCAAATGCATGTCAAGCACCGGCAGCGATCAATATTATTGATTTATACTTAGTATTCAGTAGTACCCGCTGGGTTAATTTAAGTAGCCAATTAAGTGTATTTTCAGTCCAACATGAACTGCATGGGTCACATCTTGTATGCGAGATTATACACGATTTTATGTAACAAAGCAAGGTGAA]

[+] EMBL AK073680             [AAAATAGTAGTCGTCCCCTTCTTGGCGCGCCGCCGCAGCAACAGCTGGCGCGCGAGGCTGCTCGGATCTATCCGCGGCCGTGGAACCGATGGAGCTCGACGACGCGTCTCGCCACTGGATTCGGCAGGATGGGATTTGGATGCAAGCACTACAGGAGGAGGTGCACGATCCGGGCGCCGTGCTGCAACGACGTCTTCCACTGCCGCCATTGCCACAACGAGTCCACGAAAGACGGCCACGAGCTCGATCGGCACGCGGTTGAATCGGTTATCTGTCTCGTCTGTGACACCGAACAGCCGGTTGCGCAAGTGTGCTACAACTGCGGTGTTTGCATGGGCGAGTACTTATGCAGCGCGTGCAAATTCTTCGACCACGACGTTGACAGGGAACATCTTCACTGCCAAGATTGCGGCATCTGCATAGTTGGAGGGAAGGATAACTTCTTCCACTGCGAAAAATGTGGATCATGCTACTCGGTCAGCCTGCGCGATAGCACTGGTGCATCGAGAACTCCATGAAGAACAACTGCCCCATCAGCTACGAGTATCTGTTTGACTCTCTAAGGAGACGTCCGTGCTCAGATGTGGGCACACGATGCACCTGCAATGCTCCACGAGATGCTGAAGCACGACAAGTAATCGCCCATGCTGTGCTGATCTGTTTCCATGTGGCTCTTTCTTTCTTAGTTTGTGTCTCNACTTTGTGTGCTAGATTAGTCATCTCTCTCGTGTGATCTTGTTCTTCTTGGACGCCTGATAATTGTAGGTTCTCTTGTCCCATATGCTCGATGCCTATCTTTGACATGGACAAGTTCTTGAGGGCTTTGGACGCTGAGATTGAAGCAAATATGCTGCACATAGATTACATGGGAAAGGGATGGATCGTGTGCAACGACTGCAGGGACACGACGCAGGTGTACGCGAGGGTGGCAGGGCACAAGTACTGCCATTGCCAGTCTCTCAACACATGCAGGGTGGCTGCCCCGGTGCTCCCTGCTTAATTACATTGAGTAAATTTCATATAAAATTCACGCTGCAAATGCATGTCAAGCACCGGCAGCGATCAATATTATTGATTTATACTTAGTATTCAGTAGTACCCGCTGGGTTAATTTAAGTAGCCAATTAAGTGTATTTTCAGTCCAACATGAACTGCATGGGTCACATCTTGTATGCGAGATTATACACGATTTTATGTAACAAAGCAAGGTGAA]


>consensus_4211#0 AAAATAGTAGTCGTCCCCTTCTTGGCGCGCCGCCGCAGCAACAGCTGGCGCGCGAGGCTG CTCGGATCTATCCGCGGCCGTGGAACCGATGGAGCTCGACGACGCGTCTCGCCACTGGAT TCGGCAGGATGGGATTTGGATGCAAGCACTACAGGAGGAGGTGCACGATCCGGGCGCCGT GCTGCAACGACGTCTTCCACTGCCGCCATTGCCACAACGAGTCCACGAAAGACGGCCACG AGCTCGATCGGCACGCGGTTGAATCGGTTATCTGTCTCGTCTGTGACACCGAACAGCCGG TTGCGCAAGTGTGCTACAACTGCGGTGTTTGCATGGGCGAGTACTTATGCAGCGCGTGCA AATTCTTCGACCACGACGTTGACAGGGAACATCTTCACTGCCAAGATTGCGGCATCTGCA TAGTTGGAGGGAAGGATAACTTCTTCCACTGCGAAAAATGTGGATCATGCTACTCGGTCA GCCTGCGCGATAGCACTGGTGCATCGAGAACTCCATGAAGAACAACTGCCCCATCAGCTA CGAGTATCTGTTTGACTCTCTAAGGAGACGTCCGTGCTCAGATGTGGGCACACGATGCAC CTGCAATGCTCCACGAGATGCTGAAGCACGACAAGTAATCGCCCATGCTGTGCTGATCTG TTTCCATGTGGCTCTTTCTTTCTTAGTTTGTGTCTCNACTTTGTGTGCTAGATTAGTCAT CTCTCTCGTGTGATCTTGTTCTTCTTGGACGCCTGATAATTGTAGGTTCTCTTGTCCCAT ATGCTCGATGCCTATCTTTGACATGGACAAGTTCTTGAGGGCTTTGGACGCTGAGATTGA AGCAAATATGCTGCACATAGATTACATGGGAAAGGGATGGATCGTGTGCAACGACTGCAG GGACACGACGCAGGTGTACGCGAGGGTGGCAGGGCACAAGTACTGCCATTGCCAGTCTCT CAACACATGCAGGGTGGCTGCCCCGGTGCTCCCTGCTTAATTACATTGAGTAAATTTCAT ATAAAATTCACGCTGCAAATGCATGTCAAGCACCGGCAGCGATCAATATTATTGATTTAT ACTTAGTATTCAGTAGTACCCGCTGGGTTAATTTAAGTAGCCAATTAAGTGTATTTTCAG TCCAACATGAACTGCATGGGTCACATCTTGTATGCGAGATTATACACGATTTTATGTAAC AAAGCAAGGTGAA



consensusID : consensus_4211#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1047
fasta sequence
                              [CGGCGCGCGAGGCTGCTCGGATCTCGCCGCGGCCATCGAACCGATGGAGCTCGACGACGCGTCTCGCCACGGATTCGGCAGGATGGGATTTGGATGCAAGCACTACAGGAGGAGGTGCAGGATCCGGGCGCCGTGCTGCAACGACGTCTTCCACTGCCGCCATTGCCACAACGAGTCCACGAAAGACGGCCACGAGCTCGATCGGCACGCGGTTGAATCGGTTATCTGTCTCGTCTGTGACACCGAACAGCCGGTTGCGCAAGTGTGCTACAACTGCGGCGTTTGCATGGGCGAGTACTTCTGCAGCGCGTGCAAATTCTTCGACGACGACGTTGACAGGGAACACTTCCACTGCCAAGATTGCGGCATCTGCAGAGTTGGAGGGAAGGATAACTTCTTCCACTGCGAANAATGTGGATCATGCTACTCGGTCAGCCTGCGCGACAAGCACTGCTGCATCGAGAACTCCATGAAGAACAACTGCCCCATCTGTTACGAGTATCTGTTTGACTCTCTAAGGGAGACGTCCGTGCTCAGATGTGGGCACACGATGCACCTGCNATGCTTCCACGAGATGCTGAAGCACGACNAGTTCTCTTGTCCCATATGCTCGATGCCTATCTTTGACATGGACAAGTTCTTGAGGGCTTTGGACGCTGAGATTGAAGCAAATATGCTGCACATAGATTACATGGGAAAGGGATGGATCGTGTGCAACGACTGCAGGGACACGACGCAGGTGTACGCGAGGGTGGCAGGGCACAAGTGCTGCCATTGCCAGTCTCACAACACCTGCAGGGTGGCTGCCCCGGTGCTCCCTGCTTAATTAAATTGAGTAAATTTCATATAAAATTCAGCTGCAGATGCTGTCAGCACCGCAGCATCATATTATTGATTTATACTTAGTATTCAGTAGTATTGGCTGGGTTATTTTAAGTAGCCAATTAAGTGTATTTTCAGTCCAACATGAACTGCATGGGTCACATCTTGTATGCGAATTATACACGTTTTATGTAACAAAGCAAGGTGAATTTGAAAGGCGAAGAA]

[+] EMBL CA755537             [CGGCGCGCGAGGCTGCTCGGATCTCGCCGCGGCCATCGAACCGATGGAGCTCGACGACGCGTCTCGCCACGGATTCGGCAGGATGGGATTTGGATGCAAGCACTACAGGAGGAGGTGCAGGATCCGGGCGCCGTGCTGCAACGACGTCTTCCACTGCCGCCATTGCCACAACGAGTCCACGAAAGACGGCCACGAGCTCGATCGGCACGCGGTTGAATCGGTTATCTGTCTCGTCTGTGACACCGAACAGCCGGTTGCGCAAGTGTGCTACAACTGCGGCGTTTGCATGGGCGAGTACTTCTGCAGCGCGTGCAAATTCTTCGACGACGACGTTGACAGGGAACACTTCCACTGCCAAGATTGCGGCATCTGCAGAGTTGGAGGGAAGGATAACTTCTTCCACTGCGAANAATGTGGATCATGCTACTCGGTCAGCCTGCGCGACAAGCACTGCTGCATCGAGAACTCCATGAAGAACAACTGCCCCATCTGTTACGAGTATCTGTTTGACTCTCTAAGGGAGACGTCCGTGCTCAGATGTGGGCACACGATGCACCTGCNATGCTTCCACGAGATGCTGAAGCACGACNAGTTCTCTTGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AK059950             [       CGAGGCTGCTCGGATCTCGCCGCGGCCATCGAACCGATGGAGCTCGACGACGCGTCTCGCCACGGATTCGGCAGGATGGGATTTGGATGCAAGCACTACAGGAGGAGGTGCAGGATCCGGGCGCCGTGCTGCAACGACGTCTTCCACTGCCGCCATTGCCACAACGAGTCCACGAAAGACGGCCACGAGCTCGATCGGCACGCGGTTGAATCGGTTATCTGTCTCGTCTGTGACACCGAACAGCCGGTTGCGCAAGTGTGCTACAACTGCGGCGTTTGCATGGGCGAGTACTTCTGCAGCGCGTGCAAATTCTTCGACGACGACGTTGACAGGGAACACTTCCACTGCCAAGATTGCGGCATCTGCAGAGTTGGAGGGAAGGATAACTTCTTCCACTGCGAAAAATGTGGATCATGCTACTCGGTCAGCCTGCGCGACAAGCACTGCTGCATCGAGAACTCCATGAAGAACAACTGCCCCATCTGTTACGAGTATCTGTTTGACTCTCTAAGGGAGACGTCCGTGCTCAGATGTGGGCACACGATGCACCTGCAATGCTTCCACGAGATGCTGAAGCACGACAAGTTCTCTTGTCCCATATGCTCGATGCCTATCTTTGACATGGACAAGTTCTTGAGGGCTTTGGACGCTGAGATTGAAGCAAATATGCTGCACATAGATTACATGGGAAAGGGATGGATCGTGTGCAACGACTGCAGGGACACGACGCAGGTGTACGCGAGGGTGGCAGGGCACAAGTGCTGCCATTGCCAGTCTCACAACACCTGCAGGGTGGCTGCCCCGGTGCTCCCTGCTTAATTAAATTGAGTAAATTTCATATAAAATTCAGCTGCAGATGCTGTCAGCACCGCAGCATCATATTATTGATTTATACTTAGTATTCAGTAGTATTGGCTGGGTTATTTTAAGTAGCCAATTAAGTGTATTTTCAGTCCAACATGAACTGCATGGGTCACATCTTGTATGCGAATTATACACGTTTTATGTAACAAAGCAAGGTGAATTTGAAAGGCGAAGAA]


>consensus_4211#1 CGGCGCGCGAGGCTGCTCGGATCTCGCCGCGGCCATCGAACCGATGGAGCTCGACGACGC GTCTCGCCACGGATTCGGCAGGATGGGATTTGGATGCAAGCACTACAGGAGGAGGTGCAG GATCCGGGCGCCGTGCTGCAACGACGTCTTCCACTGCCGCCATTGCCACAACGAGTCCAC GAAAGACGGCCACGAGCTCGATCGGCACGCGGTTGAATCGGTTATCTGTCTCGTCTGTGA CACCGAACAGCCGGTTGCGCAAGTGTGCTACAACTGCGGCGTTTGCATGGGCGAGTACTT CTGCAGCGCGTGCAAATTCTTCGACGACGACGTTGACAGGGAACACTTCCACTGCCAAGA TTGCGGCATCTGCAGAGTTGGAGGGAAGGATAACTTCTTCCACTGCGAANAATGTGGATC ATGCTACTCGGTCAGCCTGCGCGACAAGCACTGCTGCATCGAGAACTCCATGAAGAACAA CTGCCCCATCTGTTACGAGTATCTGTTTGACTCTCTAAGGGAGACGTCCGTGCTCAGATG TGGGCACACGATGCACCTGCNATGCTTCCACGAGATGCTGAAGCACGACNAGTTCTCTTG TCCCATATGCTCGATGCCTATCTTTGACATGGACAAGTTCTTGAGGGCTTTGGACGCTGA GATTGAAGCAAATATGCTGCACATAGATTACATGGGAAAGGGATGGATCGTGTGCAACGA CTGCAGGGACACGACGCAGGTGTACGCGAGGGTGGCAGGGCACAAGTGCTGCCATTGCCA GTCTCACAACACCTGCAGGGTGGCTGCCCCGGTGCTCCCTGCTTAATTAAATTGAGTAAA TTTCATATAAAATTCAGCTGCAGATGCTGTCAGCACCGCAGCATCATATTATTGATTTAT ACTTAGTATTCAGTAGTATTGGCTGGGTTATTTTAAGTAGCCAATTAAGTGTATTTTCAG TCCAACATGAACTGCATGGGTCACATCTTGTATGCGAATTATACACGTTTTATGTAACAA AGCAAGGTGAATTTGAAAGGCGAAGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4211#0      AAAATAGTAGTCGTCCCCTTCTTGGCGCGCCGCCGCAGCAACAGCTGGCGCGCGAGGCTG 60
consensus_4211#1      ---------------------------------------------CGGCGCGCGAGGCTG 15
                                                                    **************

consensus_4211#0      CTCGGATCTATCCGCGGCCGTGGAACCGATGGAGCTCGACGACGCGTCTCGCCACTGGAT 120
consensus_4211#1      CTCGGATCTCGCCGCGGCCATCGAACCGATGGAGCTCGACGACGCGTCTCGCCAC-GGAT 74
                      *********  ******** * ********************************* ****

consensus_4211#0      TCGGCAGGATGGGATTTGGATGCAAGCACTACAGGAGGAGGTGCACGATCCGGGCGCCGT 180
consensus_4211#1      TCGGCAGGATGGGATTTGGATGCAAGCACTACAGGAGGAGGTGCAGGATCCGGGCGCCGT 134
                      ********************************************* **************

consensus_4211#0      GCTGCAACGACGTCTTCCACTGCCGCCATTGCCACAACGAGTCCACGAAAGACGGCCACG 240
consensus_4211#1      GCTGCAACGACGTCTTCCACTGCCGCCATTGCCACAACGAGTCCACGAAAGACGGCCACG 194
                      ************************************************************

consensus_4211#0      AGCTCGATCGGCACGCGGTTGAATCGGTTATCTGTCTCGTCTGTGACACCGAACAGCCGG 300
consensus_4211#1      AGCTCGATCGGCACGCGGTTGAATCGGTTATCTGTCTCGTCTGTGACACCGAACAGCCGG 254
                      ************************************************************

consensus_4211#0      TTGCGCAAGTGTGCTACAACTGCGGTGTTTGCATGGGCGAGTACTTATGCAGCGCGTGCA 360
consensus_4211#1      TTGCGCAAGTGTGCTACAACTGCGGCGTTTGCATGGGCGAGTACTTCTGCAGCGCGTGCA 314
                      ************************* ******************** *************

consensus_4211#0      AATTCTTCGACCACGACGTTGACAGGGAACATCTTCACTGCCAAGATTGCGGCATCTGCA 420
consensus_4211#1      AATTCTTCGACGACGACGTTGACAGGGAACACTTCCACTGCCAAGATTGCGGCATCTGCA 374
                      *********** *******************  * *************************

consensus_4211#0      TAGTTGGAGGGAAGGATAACTTCTTCCACTGCGAAAAATGTGGATCATGCTACTCGGTCA 480
consensus_4211#1      GAGTTGGAGGGAAGGATAACTTCTTCCACTGCGAANAATGTGGATCATGCTACTCGGTCA 434
                       ********************************** ************************

consensus_4211#0      GCCTGCGCGATA-GCACTGGTGCATCGAGAACTCCATGAAGAACAACTGCCCCATCAGCT 539
consensus_4211#1      GCCTGCGCGACAAGCACTGCTGCATCGAGAACTCCATGAAGAACAACTGCCCCATCTGTT 494
                      ********** * ****** ************************************ * *

consensus_4211#0      ACGAGTATCTGTTTGACTCTCTAAGG-AGACGTCCGTGCTCAGATGTGGGCACACGATGC 598
consensus_4211#1      ACGAGTATCTGTTTGACTCTCTAAGGGAGACGTCCGTGCTCAGATGTGGGCACACGATGC 554
                      ************************** *********************************

consensus_4211#0      ACCTGCAATGCT-CCACGAGATGCTGAAGCACGACAAGTAATCGCCCATGCTGTGCTGAT 657
consensus_4211#1      ACCTGCNATGCTTCCACGAGATGCTGAAGCACGACNAGT--------------------- 593
                      ****** ***** ********************** ***                     

consensus_4211#0      CTGTTTCCATGTGGCTCTTTCTTTCTTAGTTTGTGTCTCNACTTTGTGTGCTAGATTAGT 717
consensus_4211#1      ------------------------------------------------------------
                                                                                  

consensus_4211#0      CATCTCTCTCGTGTGATCTTGTTCTTCTTGGACGCCTGATAATTGTAGGTTCTCTTGTCC 777
consensus_4211#1      --------------------------------------------------TCTCTTGTCC 603
                                                                        **********

consensus_4211#0      CATATGCTCGATGCCTATCTTTGACATGGACAAGTTCTTGAGGGCTTTGGACGCTGAGAT 837
consensus_4211#1      CATATGCTCGATGCCTATCTTTGACATGGACAAGTTCTTGAGGGCTTTGGACGCTGAGAT 663
                      ************************************************************

consensus_4211#0      TGAAGCAAATATGCTGCACATAGATTACATGGGAAAGGGATGGATCGTGTGCAACGACTG 897
consensus_4211#1      TGAAGCAAATATGCTGCACATAGATTACATGGGAAAGGGATGGATCGTGTGCAACGACTG 723
                      ************************************************************

consensus_4211#0      CAGGGACACGACGCAGGTGTACGCGAGGGTGGCAGGGCACAAGTACTGCCATTGCCAGTC 957
consensus_4211#1      CAGGGACACGACGCAGGTGTACGCGAGGGTGGCAGGGCACAAGTGCTGCCATTGCCAGTC 783
                      ******************************************** ***************

consensus_4211#0      TCTCAACACATGCAGGGTGGCTGCCCCGGTGCTCCCTGCTTAATTACATTGAGTAAATTT 1017
consensus_4211#1      TCACAACACCTGCAGGGTGGCTGCCCCGGTGCTCCCTGCTTAATTAAATTGAGTAAATTT 843
                      ** ****** ************************************ *************

consensus_4211#0      CATATAAAATTCACGCTGCAAATGCATGTCAAGCACCGGCAGCGATCAATATTATTGATT 1077
consensus_4211#1      CATATAAAATTCA-GCTGCAGATGC-TGTCA-GCACCG-CAGC-ATCA-TATTATTGATT 897
                      ************* ****** **** ***** ****** **** **** ***********

consensus_4211#0      TATACTTAGTATTCAGTAGTACCCGCTGGGTTAATTTAAGTAGCCAATTAAGTGTATTTT 1137
consensus_4211#1      TATACTTAGTATTCAGTAGTATTGGCTGGGTTATTTTAAGTAGCCAATTAAGTGTATTTT 957
                      *********************   ********* **************************

consensus_4211#0      CAGTCCAACATGAACTGCATGGGTCACATCTTGTATGCGAGATTATACACGATTTTATGT 1197
consensus_4211#1      CAGTCCAACATGAACTGCATGGGTCACATCTTGTATGCGA-ATTATACACG-TTTTATGT 1015
                      **************************************** ********** ********

consensus_4211#0      AACAAAGCAAGGTGAA---------------- 1213
consensus_4211#1      AACAAAGCAAGGTGAATTTGAAAGGCGAAGAA 1047
                      ****************                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)