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Oryza sativa
cluster # 4216 cluster # 4216       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4216#0 length = 1580 sequences # 2  
consensus_4216#1 length = 669 sequences # 1  

consensusID : consensus_4216#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1580
fasta sequence
                              [AGGCTGCAGCACGCGTACTTCGTATTGGTTCCAGAACAGATTTTCTGCTTGGTGGATTGCATCCTTCAATAAATTGGGCTGAGAAGGAGTCTCATGTAGATGAGGACGAAATGGCCAAGGTTAAGACAGCTTTCGTTGGAAATTTACCAGCAAATGTTACAGAGGAGTATTTAAGAAAGCTTTTTGAACATTGTGGAGAGGTAGTACGGGTTGCAGTCTCAAGGAAAGGACAATATCCAGTTGGATTTGTCCACTTTGCCAGTCGTACAGAGCTCGACAATGCAATAAAAGAAATGGATGGTGAAACAGTGAGAGGACCTGACCGAGGGGCAACTTTCAGGATCCAGGTCTCAGTTGCTCGGCCTGTGGTAGAGAACGATAAAAAGAGAATTCGTGAAGAAGTGAAAACTAGAAGATCAAACGTATCAACAGACAAGCCGGACCATTCTTATGGAAGACGTGGACATGATTCATATGATCGTCAAGCAAAAGCTCCAAGGCTATATAATGAGGTGTCTGATACGGACCCCTATGAAGCAGCTGTTGTTTCACTACCTTCAGCCGTCAAGGAACTCCTACTTCGTATTCTACGTCTTAGAATTGGCACTCGATATGATATAGACATTCATTGCATAAGGAGTCTTAATGAACTTCCTGAAAAGGCTGCAGTTGCTGTCCTTAATCAGTTTTTGATATCAGGTGCAGATAAACACAATAAAGGAGACTATTTCGCTTCATTAATTGCTAAGTACCAGGCTGAGACATTTAGCTCAGCACTAAGATTGCAGGGTTCTACTTATTTGCCAAGAAATCCTGGAATACAGAACAAGAGATTCCCACATCAAGATTACGAGTACACAGCATCCGGGAGTAGTAGATACAGTTCCTTAGGTGATTATCCTTCCTCATCTTATGTGGATGATCCCGCATCATCTCAGTCAAGGAATAGAAGGTATGATGAATACAGACCTGATCTTGTAAGATATCCAGATTCAAGATCACGGCAAGAGGAAATAGTCCGCATTGAAAGATATCCAGAACCAAGATTTGCACATGAACCAAGACAGGATACTGGAAGGCATCTCGATCTAGGGTACGTACAAGAACGGAATTCGAATATTGAGAGATCAGCTCAAGTAGCTTTTTCATCTAGGGAAGGAGGATACTTATCTGCTTCAAGGTACAACACAAACATAGTCCCAGAATTCAGCTCCAGGTCATCTGCTGAATACTCTACTGCTCGCCAACAAGTAAGGTTTGATCCATTCACAGGGGAACCATACAAGTTTGATCCCTACACCGGTGAACCCATCAGGCCAGAATCGAACCCACGTCGCTCAGGAAGCTTATACTGACTTTGATTGATTGAAGCAACAGTTTGGATATGGTAGATTAGATTTACATCCCTGAACCAAAAGGACCATATACTGCTCTTGCATGTTGTAAACCTAGTGTATTTGATGTGCCTCAGCATTGTAATGTTAGAAATCCATTTTCATCCATGTCACTGGAAAACTATGGTTGAAACAACAGTAATAAGTTCTATCATTTATGATGGCATCTGATGATATGAATTAGGG]

[+] EMBL AK059444             [AGGCTGCAGCACGCGTACTTCGTATTGGTTCCAGAACAGATTTTCTGCTTGGTGGATTGCATCCTTCAATAAATTGGGCTGAGAAGGAGTCTCATGTAGATGAGGACGAAATGGCCAAGGTTAAGACAGCTTTCGTTGGAAATTTACCAGCAAATGTTACAGAGGAGTATTTAAGAAAGCTTTTTGAACATTGTGGAGAGGTAGTACGGGTTGCAGTCTCAAGGAAAGGACAATATCCAGTTGGATTTGTCCACTTTGCCAGTCGTACAGAGCTCGACAATGCAATAAAAGAAATGGATGGTGAAACAGTGAGAGGACCTGACCGAGGGGCAACTTTCAGGATCCAGGTCTCAGTTGCTCGGCCTGTGGTAGAGAACGATAAAAAGAGAATTCGTGAAGAAGTGAAAACTAGAAGATCAAACGTATCAACAGACAAGCCGGACCATTCTTATGGAAGACGTGGACATGATTCATATGATCGTCAAGCAAAAGCTCCAAGGCTATATAATGAGGTGTCTGATACGGACCCCTATGAAGCAGCTGTTGTTTCACTACCTTCAGCCGTCAAGGAACTCCTACTTCGTATTCTACGTCTTAGAATTGGCACTCGATATGATATAGACATTCATTGCATAAGGAGTCTTAATGAACTTCCTGAAAAGGCTGCAGTTGCTGTCCTTAATCAGTTTTTGATATCAGGTGCAGATAAACACAATAAAGGAGACTATTTCGCTTCATTAATTGCTAAGTACCAGGCTGAGACATTTAGCTCAGCACTAAGATTGCAGGGTTCTACTTATTTGCCAAGAAATCCTGGAATACAGAACAAGAGATTCCCACATCAAGATTACGAGTACACAGCATCCGGGAGTAGTAGATACAGTTCCTTAGGTGATTATCCTTCCTCATCTTATGTGGATGATCCCGCATCATCTCAGTCAAGGAATAGAAGGTATGATGAATACAGACCTGATCTTGTAAGATATCCAGATTCAAGATCACGGCAAGAGGAAATAGTCCGCATTGAAAGATATCCAGAACCAAGATTTGCACATGAACCAAGACAGGATACTGGAAGGCATCTCGATCTAGGGTACGTACAAGAACGGAATTCGAATATTGAGAGATCAGCTCAAGTAGCTTTTTCATCTAGGGAAGGAGGATACTTATCTGCTTCAAGGTACAACACAAACATAGTCCCAGAATTCAGCTCCAGGTCATCTGCTGAATACTCTACTGCTCGCCAACAAGTAAGGTTTGATCCATTCACAGGGGAACCATACAAGTTTGATCCCTACACCGGTGAACCCATCAGGCCAGAATCGAACCCACGTCGCTCAGGAAGCTTATACTGACTTTGATTGATTGAAGCAACAGTTTGGATATGGTAGATTAGATTTACATCCCTGAACCAAAAGGACCATATACTGCTCTTGCATGTTGTAAACCTAGTGTATTTGATGTGCCTCAGCATTGTAATGTTAGAAATCCATTTTCATCCATGTCACTGGAAAACTATGGTTGAAACAACAGTAATAAGTTCTATCATTTATGATGGCATCTGATGATATGAATTAGGG]
[+] EMBL CA767358             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TCGTCAAGCAAAAGCTCCAAGGCTATATAATGAGGTGTCTGATACGGACCCCTATGAAGCAGCTGTTGTTTCACTACCTTCAGCCGTCAAGGAACTCCTACTTCGTATTCTACGTCTTAGAATTGGCACTCGATATGATATAGACATTCATTGCATAAGGAGTCTTAATGAACTTCCTGAAAAGGCTGCAGTTGCTGTCCTTAATCAGTTTTTGATATCAGGTGCAGATAAACACAATAAAGGAGACTATTTCGCTTCATTAATTGCTAAGTACCAGGCTGAGACATTTAGCTCAGCACTAAGATTGCAGGGTTCTACTTATTTGCCAAGAAATCCTGAAATACAGAACAAGAGATTCCCACATCAAGATTACGAGTACACAGCATCCGGGAGTAATAGATACAGTTCCTTAGGTGATTATCCTTCCTCATCTTATGTGGATGATCCCGCATCATCTCAGTCAAGGAATAGAAGGTATGATGAATACAGACCTGATCTTGTAAGATATCCAGATTCAAGATCACGGCAAGAGGAAATAGTCCGCATTGAAAGATATCCAGAACCAAGATTTGCACATGAACCAAGACAGGATACTGGAAGGCATCTCAATCTAGGGTACGTACAAGAACGGAATTCGAATATTGAGAGATCAGCTCAAGTAGCTTTTTCATCTANGGAAGGAGGATACTTATCTGCTTCAAGGTACAACACAAACATAGTCCCAGAATTCAGCTNCAGGTCATCTGCTGAATACTCTACTGNGCGCC ACAAGTAAGGGTTGATCCATTCACAGGGGAACCATACAAGNTT                                                                                                                                                                                                                                                                                                   ]


>consensus_4216#0 AGGCTGCAGCACGCGTACTTCGTATTGGTTCCAGAACAGATTTTCTGCTTGGTGGATTGC ATCCTTCAATAAATTGGGCTGAGAAGGAGTCTCATGTAGATGAGGACGAAATGGCCAAGG TTAAGACAGCTTTCGTTGGAAATTTACCAGCAAATGTTACAGAGGAGTATTTAAGAAAGC TTTTTGAACATTGTGGAGAGGTAGTACGGGTTGCAGTCTCAAGGAAAGGACAATATCCAG TTGGATTTGTCCACTTTGCCAGTCGTACAGAGCTCGACAATGCAATAAAAGAAATGGATG GTGAAACAGTGAGAGGACCTGACCGAGGGGCAACTTTCAGGATCCAGGTCTCAGTTGCTC GGCCTGTGGTAGAGAACGATAAAAAGAGAATTCGTGAAGAAGTGAAAACTAGAAGATCAA ACGTATCAACAGACAAGCCGGACCATTCTTATGGAAGACGTGGACATGATTCATATGATC GTCAAGCAAAAGCTCCAAGGCTATATAATGAGGTGTCTGATACGGACCCCTATGAAGCAG CTGTTGTTTCACTACCTTCAGCCGTCAAGGAACTCCTACTTCGTATTCTACGTCTTAGAA TTGGCACTCGATATGATATAGACATTCATTGCATAAGGAGTCTTAATGAACTTCCTGAAA AGGCTGCAGTTGCTGTCCTTAATCAGTTTTTGATATCAGGTGCAGATAAACACAATAAAG GAGACTATTTCGCTTCATTAATTGCTAAGTACCAGGCTGAGACATTTAGCTCAGCACTAA GATTGCAGGGTTCTACTTATTTGCCAAGAAATCCTGGAATACAGAACAAGAGATTCCCAC ATCAAGATTACGAGTACACAGCATCCGGGAGTAGTAGATACAGTTCCTTAGGTGATTATC CTTCCTCATCTTATGTGGATGATCCCGCATCATCTCAGTCAAGGAATAGAAGGTATGATG AATACAGACCTGATCTTGTAAGATATCCAGATTCAAGATCACGGCAAGAGGAAATAGTCC GCATTGAAAGATATCCAGAACCAAGATTTGCACATGAACCAAGACAGGATACTGGAAGGC ATCTCGATCTAGGGTACGTACAAGAACGGAATTCGAATATTGAGAGATCAGCTCAAGTAG CTTTTTCATCTAGGGAAGGAGGATACTTATCTGCTTCAAGGTACAACACAAACATAGTCC CAGAATTCAGCTCCAGGTCATCTGCTGAATACTCTACTGCTCGCCAACAAGTAAGGTTTG ATCCATTCACAGGGGAACCATACAAGTTTGATCCCTACACCGGTGAACCCATCAGGCCAG AATCGAACCCACGTCGCTCAGGAAGCTTATACTGACTTTGATTGATTGAAGCAACAGTTT GGATATGGTAGATTAGATTTACATCCCTGAACCAAAAGGACCATATACTGCTCTTGCATG TTGTAAACCTAGTGTATTTGATGTGCCTCAGCATTGTAATGTTAGAAATCCATTTTCATC CATGTCACTGGAAAACTATGGTTGAAACAACAGTAATAAGTTCTATCATTTATGATGGCA TCTGATGATATGAATTAGGG



consensusID : consensus_4216#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 669
fasta sequence
                              [AAACTGGTCNGNTCCCCCGNGCGAATNTAATGTANNANGAACCCNGTCCTGATCTTTTAANATATCCNNCANTCAAGATCACGGCAANAGGAAATAGTCCGCATTGAAAGATATCCAGAACCAAGATTTGCACATGAACCAAGACAGGATACTGGAAGGCATCTCAATCTAGGGTACGTNCAAGAACGGAATTCGAATATTGAGAGATCAGCTCAAGTNGCTTTTTCATCTAGGGAAGGAGGATACTTATCTGCTTCAAGGTACAACACAAACATAGTCCCAGAATTCAGCTCCAGGTCATCTNCTNNNTNCTCTACTGCGCGCCAACAAGTAAGGTTTGATCCATTCACAGGGGAACCATACAAGTTTGATCCCTACACCGGTGAACCCNTCAGGCCAGAATCGAACCCACCTCGCTCAGGAAGCTTATACTGACTTTGATTGATTGAAGCAACAGTTTGGATATGGTAGATTAGATTTACATCCCTGAACCAAAANGACCATATACTGCTCTTGCATGTTGTTAACCNANTGTATTTGANGTTGCCTCCGCATTGTNATGTTNGAAATCCATTTCNTCCATGTTNCTGGAAAACTATNGGTGAAACACNGTAATAAATTCTATCCTTTATGATGGCTCTGATGATATGAATTAGGGAAAACNNACNT]

[+] EMBL AA754495             [AAACTGGTCNGNTCCCCCGNGCGAATNTAATGTANNANGAACCCNGTCCTGATCTTTTAANATATCCNNCANTCAAGATCACGGCAANAGGAAATAGTCCGCATTGAAAGATATCCAGAACCAAGATTTGCACATGAACCAAGACAGGATACTGGAAGGCATCTCAATCTAGGGTACGTNCAAGAACGGAATTCGAATATTGAGAGATCAGCTCAAGTNGCTTTTTCATCTAGGGAAGGAGGATACTTATCTGCTTCAAGGTACAACACAAACATAGTCCCAGAATTCAGCTCCAGGTCATCTNCTNNNTNCTCTACTGCGCGCCAACAAGTAAGGTTTGATCCATTCACAGGGGAACCATACAAGTTTGATCCCTACACCGGTGAACCCNTCAGGCCAGAATCGAACCCACCTCGCTCAGGAAGCTTATACTGACTTTGATTGATTGAAGCAACAGTTTGGATATGGTAGATTAGATTTACATCCCTGAACCAAAANGACCATATACTGCTCTTGCATGTTGTTAACCNANTGTATTTGANGTTGCCTCCGCATTGTNATGTTNGAAATCCATTTCNTCCATGTTNCTGGAAAACTATNGGTGAAACACNGTAATAAATTCTATCCTTTATGATGGCTCTGATGATATGAATTAGGGAAAACNNACNT]


>consensus_4216#1 AAACTGGTCNGNTCCCCCGNGCGAATNTAATGTANNANGAACCCNGTCCTGATCTTTTAA NATATCCNNCANTCAAGATCACGGCAANAGGAAATAGTCCGCATTGAAAGATATCCAGAA CCAAGATTTGCACATGAACCAAGACAGGATACTGGAAGGCATCTCAATCTAGGGTACGTN CAAGAACGGAATTCGAATATTGAGAGATCAGCTCAAGTNGCTTTTTCATCTAGGGAAGGA GGATACTTATCTGCTTCAAGGTACAACACAAACATAGTCCCAGAATTCAGCTCCAGGTCA TCTNCTNNNTNCTCTACTGCGCGCCAACAAGTAAGGTTTGATCCATTCACAGGGGAACCA TACAAGTTTGATCCCTACACCGGTGAACCCNTCAGGCCAGAATCGAACCCACCTCGCTCA GGAAGCTTATACTGACTTTGATTGATTGAAGCAACAGTTTGGATATGGTAGATTAGATTT ACATCCCTGAACCAAAANGACCATATACTGCTCTTGCATGTTGTTAACCNANTGTATTTG ANGTTGCCTCCGCATTGTNATGTTNGAAATCCATTTCNTCCATGTTNCTGGAAAACTATN GGTGAAACACNGTAATAAATTCTATCCTTTATGATGGCTCTGATGATATGAATTAGGGAA AACNNACNT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4216#0      AGGCTGCAGCACGCGTACTTCGTATTGGTTCCAGAACAGATTTTCTGCTTGGTGGATTGC 60
consensus_4216#1      ------------------------------------------------------------
                                                                                  

consensus_4216#0      ATCCTTCAATAAATTGGGCTGAGAAGGAGTCTCATGTAGATGAGGACGAAATGGCCAAGG 120
consensus_4216#1      ------------------------------------------------------------
                                                                                  

consensus_4216#0      TTAAGACAGCTTTCGTTGGAAATTTACCAGCAAATGTTACAGAGGAGTATTTAAGAAAGC 180
consensus_4216#1      ------------------------------------------------------------
                                                                                  

consensus_4216#0      TTTTTGAACATTGTGGAGAGGTAGTACGGGTTGCAGTCTCAAGGAAAGGACAATATCCAG 240
consensus_4216#1      ------------------------------------------------------------
                                                                                  

consensus_4216#0      TTGGATTTGTCCACTTTGCCAGTCGTACAGAGCTCGACAATGCAATAAAAGAAATGGATG 300
consensus_4216#1      ------------------------------------------------------------
                                                                                  

consensus_4216#0      GTGAAACAGTGAGAGGACCTGACCGAGGGGCAACTTTCAGGATCCAGGTCTCAGTTGCTC 360
consensus_4216#1      ------------------------------------------------------------
                                                                                  

consensus_4216#0      GGCCTGTGGTAGAGAACGATAAAAAGAGAATTCGTGAAGAAGTGAAAACTAGAAGATCAA 420
consensus_4216#1      ------------------------------------------------------------
                                                                                  

consensus_4216#0      ACGTATCAACAGACAAGCCGGACCATTCTTATGGAAGACGTGGACATGATTCATATGATC 480
consensus_4216#1      ------------------------------------------------------------
                                                                                  

consensus_4216#0      GTCAAGCAAAAGCTCCAAGGCTATATAATGAGGTGTCTGATACGGACCCCTATGAAGCAG 540
consensus_4216#1      ------------------------------------------------------------
                                                                                  

consensus_4216#0      CTGTTGTTTCACTACCTTCAGCCGTCAAGGAACTCCTACTTCGTATTCTACGTCTTAGAA 600
consensus_4216#1      ------------------------------------------------------------
                                                                                  

consensus_4216#0      TTGGCACTCGATATGATATAGACATTCATTGCATAAGGAGTCTTAATGAACTTCCTGAAA 660
consensus_4216#1      ------------------------------------------------------------
                                                                                  

consensus_4216#0      AGGCTGCAGTTGCTGTCCTTAATCAGTTTTTGATATCAGGTGCAGATAAACACAATAAAG 720
consensus_4216#1      ------------------------------------------------------------
                                                                                  

consensus_4216#0      GAGACTATTTCGCTTCATTAATTGCTAAGTACCAGGCTGAGACATTTAGCTCAGCACTAA 780
consensus_4216#1      ------------------------------------------------------------
                                                                                  

consensus_4216#0      GATTGCAGGGTTCTACTTATTTGCCAAGAAATCCTGGAATACAGAACAAGAGATTCCCAC 840
consensus_4216#1      ------------------------------------------------------------
                                                                                  

consensus_4216#0      ATCAAGATTACGAGTACACAGCATCCGGGAGTAGTAGATACAGTTCCTTAGGTGATTATC 900
consensus_4216#1      ------------------------------------------------------------
                                                                                  

consensus_4216#0      CTTCCTCATCTTATGTGGATGATCCCGCATCATCTCAGTCAAGGAATAGAAGGTATGATG 960
consensus_4216#1      ---------------------AAACTGGTCNGNTCCCCCGNGCGAATNTAATGTANNANG 39
                                           *  * *        *       ****  ** ***  * *

consensus_4216#0      AATACAGACCTGATCTTGTAAGATATCCAG-ATTCAAGATCACGGCAAGAGGAAATAGTC 1019
consensus_4216#1      AACCCNGTCCTGATCTTTTAANATATCCNNCANTCAAGATCACGGCAANAGGAAATAGTC 99
                      **  * * ********* *** ******   * *************** ***********

consensus_4216#0      CGCATTGAAAGATATCCAGAACCAAGATTTGCACATGAACCAAGACAGGATACTGGAAGG 1079
consensus_4216#1      CGCATTGAAAGATATCCAGAACCAAGATTTGCACATGAACCAAGACAGGATACTGGAAGG 159
                      ************************************************************

consensus_4216#0      CATCTCGATCTAGGGTACGTACAAGAACGGAATTCGAATATTGAGAGATCAGCTCAAGTA 1139
consensus_4216#1      CATCTCAATCTAGGGTACGTNCAAGAACGGAATTCGAATATTGAGAGATCAGCTCAAGTN 219
                      ****** ************* ************************************** 

consensus_4216#0      GCTTTTTCATCTAGGGAAGGAGGATACTTATCTGCTTCAAGGTACAACACAAACATAGTC 1199
consensus_4216#1      GCTTTTTCATCTAGGGAAGGAGGATACTTATCTGCTTCAAGGTACAACACAAACATAGTC 279
                      ************************************************************

consensus_4216#0      CCAGAATTCAGCTCCAGGTCATCTGCTGAATACTCTACTGCTCGCCAACAAGTAAGGTTT 1259
consensus_4216#1      CCAGAATTCAGCTCCAGGTCATCTNCTNNNTNCTCTACTGCGCGCCAACAAGTAAGGTTT 339
                      ************************ **   * ********* ******************

consensus_4216#0      GATCCATTCACAGGGGAACCATACAAGTTTGATCCCTACACCGGTGAACCCATCAGGCCA 1319
consensus_4216#1      GATCCATTCACAGGGGAACCATACAAGTTTGATCCCTACACCGGTGAACCCNTCAGGCCA 399
                      *************************************************** ********

consensus_4216#0      GAATCGAACCCACGTCGCTCAGGAAGCTTATACTGACTTTGATTGATTGAAGCAACAGTT 1379
consensus_4216#1      GAATCGAACCCACCTCGCTCAGGAAGCTTATACTGACTTTGATTGATTGAAGCAACAGTT 459
                      ************* **********************************************

consensus_4216#0      TGGATATGGTAGATTAGATTTACATCCCTGAACCAAAAGGACCATATACTGCTCTTGCAT 1439
consensus_4216#1      TGGATATGGTAGATTAGATTTACATCCCTGAACCAAAANGACCATATACTGCTCTTGCAT 519
                      ************************************** *********************

consensus_4216#0      GTTGTAAACCTAGTGTATTTGATGT-GCCTCAGCATTGTAATGTTAGAAATCCATTTTCA 1498
consensus_4216#1      GTTGTTAACCNANTGTATTTGANGTTGCCTCCGCATTGTNATGTTNGAAATCCATTT-CN 578
                      ***** **** * ********* ** ***** ******* ***** *********** * 

consensus_4216#0      TCCATGTCACTGGAAAACTATGGTTGAAACAACAGTAATAAGTTCTATCATTTATGATGG 1558
consensus_4216#1      TCCATGTTNCTGGAAAACTATNGGTGAAACA-CNGTAATAAATTCTATCCTTTATGATGG 637
                      *******  ************ * ******* * ******* ******* **********

consensus_4216#0      CATCTGATGATATGAATTAGGG----------- 1580
consensus_4216#1      C-TCTGATGATATGAATTAGGGAAAACNNACNT 669
                      * ********************           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)