These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4216#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1580 fasta sequence [AGGCTGCAGCACGCGTACTTCGTATTGGTTCCAGAACAGATTTTCTGCTTGGTGGATTGCATCCTTCAATAAATTGGGCTGAGAAGGAGTCTCATGTAGATGAGGACGAAATGGCCAAGGTTAAGACAGCTTTCGTTGGAAATTTACCAGCAAATGTTACAGAGGAGTATTTAAGAAAGCTTTTTGAACATTGTGGAGAGGTAGTACGGGTTGCAGTCTCAAGGAAAGGACAATATCCAGTTGGATTTGTCCACTTTGCCAGTCGTACAGAGCTCGACAATGCAATAAAAGAAATGGATGGTGAAACAGTGAGAGGACCTGACCGAGGGGCAACTTTCAGGATCCAGGTCTCAGTTGCTCGGCCTGTGGTAGAGAACGATAAAAAGAGAATTCGTGAAGAAGTGAAAACTAGAAGATCAAACGTATCAACAGACAAGCCGGACCATTCTTATGGAAGACGTGGACATGATTCATATGATCGTCAAGCAAAAGCTCCAAGGCTATATAATGAGGTGTCTGATACGGACCCCTATGAAGCAGCTGTTGTTTCACTACCTTCAGCCGTCAAGGAACTCCTACTTCGTATTCTACGTCTTAGAATTGGCACTCGATATGATATAGACATTCATTGCATAAGGAGTCTTAATGAACTTCCTGAAAAGGCTGCAGTTGCTGTCCTTAATCAGTTTTTGATATCAGGTGCAGATAAACACAATAAAGGAGACTATTTCGCTTCATTAATTGCTAAGTACCAGGCTGAGACATTTAGCTCAGCACTAAGATTGCAGGGTTCTACTTATTTGCCAAGAAATCCTGGAATACAGAACAAGAGATTCCCACATCAAGATTACGAGTACACAGCATCCGGGAGTAGTAGATACAGTTCCTTAGGTGATTATCCTTCCTCATCTTATGTGGATGATCCCGCATCATCTCAGTCAAGGAATAGAAGGTATGATGAATACAGACCTGATCTTGTAAGATATCCAGATTCAAGATCACGGCAAGAGGAAATAGTCCGCATTGAAAGATATCCAGAACCAAGATTTGCACATGAACCAAGACAGGATACTGGAAGGCATCTCGATCTAGGGTACGTACAAGAACGGAATTCGAATATTGAGAGATCAGCTCAAGTAGCTTTTTCATCTAGGGAAGGAGGATACTTATCTGCTTCAAGGTACAACACAAACATAGTCCCAGAATTCAGCTCCAGGTCATCTGCTGAATACTCTACTGCTCGCCAACAAGTAAGGTTTGATCCATTCACAGGGGAACCATACAAGTTTGATCCCTACACCGGTGAACCCATCAGGCCAGAATCGAACCCACGTCGCTCAGGAAGCTTATACTGACTTTGATTGATTGAAGCAACAGTTTGGATATGGTAGATTAGATTTACATCCCTGAACCAAAAGGACCATATACTGCTCTTGCATGTTGTAAACCTAGTGTATTTGATGTGCCTCAGCATTGTAATGTTAGAAATCCATTTTCATCCATGTCACTGGAAAACTATGGTTGAAACAACAGTAATAAGTTCTATCATTTATGATGGCATCTGATGATATGAATTAGGG] [+] EMBL AK059444 [AGGCTGCAGCACGCGTACTTCGTATTGGTTCCAGAACAGATTTTCTGCTTGGTGGATTGCATCCTTCAATAAATTGGGCTGAGAAGGAGTCTCATGTAGATGAGGACGAAATGGCCAAGGTTAAGACAGCTTTCGTTGGAAATTTACCAGCAAATGTTACAGAGGAGTATTTAAGAAAGCTTTTTGAACATTGTGGAGAGGTAGTACGGGTTGCAGTCTCAAGGAAAGGACAATATCCAGTTGGATTTGTCCACTTTGCCAGTCGTACAGAGCTCGACAATGCAATAAAAGAAATGGATGGTGAAACAGTGAGAGGACCTGACCGAGGGGCAACTTTCAGGATCCAGGTCTCAGTTGCTCGGCCTGTGGTAGAGAACGATAAAAAGAGAATTCGTGAAGAAGTGAAAACTAGAAGATCAAACGTATCAACAGACAAGCCGGACCATTCTTATGGAAGACGTGGACATGATTCATATGATCGTCAAGCAAAAGCTCCAAGGCTATATAATGAGGTGTCTGATACGGACCCCTATGAAGCAGCTGTTGTTTCACTACCTTCAGCCGTCAAGGAACTCCTACTTCGTATTCTACGTCTTAGAATTGGCACTCGATATGATATAGACATTCATTGCATAAGGAGTCTTAATGAACTTCCTGAAAAGGCTGCAGTTGCTGTCCTTAATCAGTTTTTGATATCAGGTGCAGATAAACACAATAAAGGAGACTATTTCGCTTCATTAATTGCTAAGTACCAGGCTGAGACATTTAGCTCAGCACTAAGATTGCAGGGTTCTACTTATTTGCCAAGAAATCCTGGAATACAGAACAAGAGATTCCCACATCAAGATTACGAGTACACAGCATCCGGGAGTAGTAGATACAGTTCCTTAGGTGATTATCCTTCCTCATCTTATGTGGATGATCCCGCATCATCTCAGTCAAGGAATAGAAGGTATGATGAATACAGACCTGATCTTGTAAGATATCCAGATTCAAGATCACGGCAAGAGGAAATAGTCCGCATTGAAAGATATCCAGAACCAAGATTTGCACATGAACCAAGACAGGATACTGGAAGGCATCTCGATCTAGGGTACGTACAAGAACGGAATTCGAATATTGAGAGATCAGCTCAAGTAGCTTTTTCATCTAGGGAAGGAGGATACTTATCTGCTTCAAGGTACAACACAAACATAGTCCCAGAATTCAGCTCCAGGTCATCTGCTGAATACTCTACTGCTCGCCAACAAGTAAGGTTTGATCCATTCACAGGGGAACCATACAAGTTTGATCCCTACACCGGTGAACCCATCAGGCCAGAATCGAACCCACGTCGCTCAGGAAGCTTATACTGACTTTGATTGATTGAAGCAACAGTTTGGATATGGTAGATTAGATTTACATCCCTGAACCAAAAGGACCATATACTGCTCTTGCATGTTGTAAACCTAGTGTATTTGATGTGCCTCAGCATTGTAATGTTAGAAATCCATTTTCATCCATGTCACTGGAAAACTATGGTTGAAACAACAGTAATAAGTTCTATCATTTATGATGGCATCTGATGATATGAATTAGGG] [+] EMBL CA767358 [ TCGTCAAGCAAAAGCTCCAAGGCTATATAATGAGGTGTCTGATACGGACCCCTATGAAGCAGCTGTTGTTTCACTACCTTCAGCCGTCAAGGAACTCCTACTTCGTATTCTACGTCTTAGAATTGGCACTCGATATGATATAGACATTCATTGCATAAGGAGTCTTAATGAACTTCCTGAAAAGGCTGCAGTTGCTGTCCTTAATCAGTTTTTGATATCAGGTGCAGATAAACACAATAAAGGAGACTATTTCGCTTCATTAATTGCTAAGTACCAGGCTGAGACATTTAGCTCAGCACTAAGATTGCAGGGTTCTACTTATTTGCCAAGAAATCCTGAAATACAGAACAAGAGATTCCCACATCAAGATTACGAGTACACAGCATCCGGGAGTAATAGATACAGTTCCTTAGGTGATTATCCTTCCTCATCTTATGTGGATGATCCCGCATCATCTCAGTCAAGGAATAGAAGGTATGATGAATACAGACCTGATCTTGTAAGATATCCAGATTCAAGATCACGGCAAGAGGAAATAGTCCGCATTGAAAGATATCCAGAACCAAGATTTGCACATGAACCAAGACAGGATACTGGAAGGCATCTCAATCTAGGGTACGTACAAGAACGGAATTCGAATATTGAGAGATCAGCTCAAGTAGCTTTTTCATCTANGGAAGGAGGATACTTATCTGCTTCAAGGTACAACACAAACATAGTCCCAGAATTCAGCTNCAGGTCATCTGCTGAATACTCTACTGNGCGCC ACAAGTAAGGGTTGATCCATTCACAGGGGAACCATACAAGNTT ] consensusID : consensus_4216#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence [AAACTGGTCNGNTCCCCCGNGCGAATNTAATGTANNANGAACCCNGTCCTGATCTTTTAANATATCCNNCANTCAAGATCACGGCAANAGGAAATAGTCCGCATTGAAAGATATCCAGAACCAAGATTTGCACATGAACCAAGACAGGATACTGGAAGGCATCTCAATCTAGGGTACGTNCAAGAACGGAATTCGAATATTGAGAGATCAGCTCAAGTNGCTTTTTCATCTAGGGAAGGAGGATACTTATCTGCTTCAAGGTACAACACAAACATAGTCCCAGAATTCAGCTCCAGGTCATCTNCTNNNTNCTCTACTGCGCGCCAACAAGTAAGGTTTGATCCATTCACAGGGGAACCATACAAGTTTGATCCCTACACCGGTGAACCCNTCAGGCCAGAATCGAACCCACCTCGCTCAGGAAGCTTATACTGACTTTGATTGATTGAAGCAACAGTTTGGATATGGTAGATTAGATTTACATCCCTGAACCAAAANGACCATATACTGCTCTTGCATGTTGTTAACCNANTGTATTTGANGTTGCCTCCGCATTGTNATGTTNGAAATCCATTTCNTCCATGTTNCTGGAAAACTATNGGTGAAACACNGTAATAAATTCTATCCTTTATGATGGCTCTGATGATATGAATTAGGGAAAACNNACNT] [+] EMBL AA754495 [AAACTGGTCNGNTCCCCCGNGCGAATNTAATGTANNANGAACCCNGTCCTGATCTTTTAANATATCCNNCANTCAAGATCACGGCAANAGGAAATAGTCCGCATTGAAAGATATCCAGAACCAAGATTTGCACATGAACCAAGACAGGATACTGGAAGGCATCTCAATCTAGGGTACGTNCAAGAACGGAATTCGAATATTGAGAGATCAGCTCAAGTNGCTTTTTCATCTAGGGAAGGAGGATACTTATCTGCTTCAAGGTACAACACAAACATAGTCCCAGAATTCAGCTCCAGGTCATCTNCTNNNTNCTCTACTGCGCGCCAACAAGTAAGGTTTGATCCATTCACAGGGGAACCATACAAGTTTGATCCCTACACCGGTGAACCCNTCAGGCCAGAATCGAACCCACCTCGCTCAGGAAGCTTATACTGACTTTGATTGATTGAAGCAACAGTTTGGATATGGTAGATTAGATTTACATCCCTGAACCAAAANGACCATATACTGCTCTTGCATGTTGTTAACCNANTGTATTTGANGTTGCCTCCGCATTGTNATGTTNGAAATCCATTTCNTCCATGTTNCTGGAAAACTATNGGTGAAACACNGTAATAAATTCTATCCTTTATGATGGCTCTGATGATATGAATTAGGGAAAACNNACNT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4216#0 AGGCTGCAGCACGCGTACTTCGTATTGGTTCCAGAACAGATTTTCTGCTTGGTGGATTGC 60 consensus_4216#1 ------------------------------------------------------------ consensus_4216#0 ATCCTTCAATAAATTGGGCTGAGAAGGAGTCTCATGTAGATGAGGACGAAATGGCCAAGG 120 consensus_4216#1 ------------------------------------------------------------ consensus_4216#0 TTAAGACAGCTTTCGTTGGAAATTTACCAGCAAATGTTACAGAGGAGTATTTAAGAAAGC 180 consensus_4216#1 ------------------------------------------------------------ consensus_4216#0 TTTTTGAACATTGTGGAGAGGTAGTACGGGTTGCAGTCTCAAGGAAAGGACAATATCCAG 240 consensus_4216#1 ------------------------------------------------------------ consensus_4216#0 TTGGATTTGTCCACTTTGCCAGTCGTACAGAGCTCGACAATGCAATAAAAGAAATGGATG 300 consensus_4216#1 ------------------------------------------------------------ consensus_4216#0 GTGAAACAGTGAGAGGACCTGACCGAGGGGCAACTTTCAGGATCCAGGTCTCAGTTGCTC 360 consensus_4216#1 ------------------------------------------------------------ consensus_4216#0 GGCCTGTGGTAGAGAACGATAAAAAGAGAATTCGTGAAGAAGTGAAAACTAGAAGATCAA 420 consensus_4216#1 ------------------------------------------------------------ consensus_4216#0 ACGTATCAACAGACAAGCCGGACCATTCTTATGGAAGACGTGGACATGATTCATATGATC 480 consensus_4216#1 ------------------------------------------------------------ consensus_4216#0 GTCAAGCAAAAGCTCCAAGGCTATATAATGAGGTGTCTGATACGGACCCCTATGAAGCAG 540 consensus_4216#1 ------------------------------------------------------------ consensus_4216#0 CTGTTGTTTCACTACCTTCAGCCGTCAAGGAACTCCTACTTCGTATTCTACGTCTTAGAA 600 consensus_4216#1 ------------------------------------------------------------ consensus_4216#0 TTGGCACTCGATATGATATAGACATTCATTGCATAAGGAGTCTTAATGAACTTCCTGAAA 660 consensus_4216#1 ------------------------------------------------------------ consensus_4216#0 AGGCTGCAGTTGCTGTCCTTAATCAGTTTTTGATATCAGGTGCAGATAAACACAATAAAG 720 consensus_4216#1 ------------------------------------------------------------ consensus_4216#0 GAGACTATTTCGCTTCATTAATTGCTAAGTACCAGGCTGAGACATTTAGCTCAGCACTAA 780 consensus_4216#1 ------------------------------------------------------------ consensus_4216#0 GATTGCAGGGTTCTACTTATTTGCCAAGAAATCCTGGAATACAGAACAAGAGATTCCCAC 840 consensus_4216#1 ------------------------------------------------------------ consensus_4216#0 ATCAAGATTACGAGTACACAGCATCCGGGAGTAGTAGATACAGTTCCTTAGGTGATTATC 900 consensus_4216#1 ------------------------------------------------------------ consensus_4216#0 CTTCCTCATCTTATGTGGATGATCCCGCATCATCTCAGTCAAGGAATAGAAGGTATGATG 960 consensus_4216#1 ---------------------AAACTGGTCNGNTCCCCCGNGCGAATNTAATGTANNANG 39 * * * * **** ** *** * * consensus_4216#0 AATACAGACCTGATCTTGTAAGATATCCAG-ATTCAAGATCACGGCAAGAGGAAATAGTC 1019 consensus_4216#1 AACCCNGTCCTGATCTTTTAANATATCCNNCANTCAAGATCACGGCAANAGGAAATAGTC 99 ** * * ********* *** ****** * *************** *********** consensus_4216#0 CGCATTGAAAGATATCCAGAACCAAGATTTGCACATGAACCAAGACAGGATACTGGAAGG 1079 consensus_4216#1 CGCATTGAAAGATATCCAGAACCAAGATTTGCACATGAACCAAGACAGGATACTGGAAGG 159 ************************************************************ consensus_4216#0 CATCTCGATCTAGGGTACGTACAAGAACGGAATTCGAATATTGAGAGATCAGCTCAAGTA 1139 consensus_4216#1 CATCTCAATCTAGGGTACGTNCAAGAACGGAATTCGAATATTGAGAGATCAGCTCAAGTN 219 ****** ************* ************************************** consensus_4216#0 GCTTTTTCATCTAGGGAAGGAGGATACTTATCTGCTTCAAGGTACAACACAAACATAGTC 1199 consensus_4216#1 GCTTTTTCATCTAGGGAAGGAGGATACTTATCTGCTTCAAGGTACAACACAAACATAGTC 279 ************************************************************ consensus_4216#0 CCAGAATTCAGCTCCAGGTCATCTGCTGAATACTCTACTGCTCGCCAACAAGTAAGGTTT 1259 consensus_4216#1 CCAGAATTCAGCTCCAGGTCATCTNCTNNNTNCTCTACTGCGCGCCAACAAGTAAGGTTT 339 ************************ ** * ********* ****************** consensus_4216#0 GATCCATTCACAGGGGAACCATACAAGTTTGATCCCTACACCGGTGAACCCATCAGGCCA 1319 consensus_4216#1 GATCCATTCACAGGGGAACCATACAAGTTTGATCCCTACACCGGTGAACCCNTCAGGCCA 399 *************************************************** ******** consensus_4216#0 GAATCGAACCCACGTCGCTCAGGAAGCTTATACTGACTTTGATTGATTGAAGCAACAGTT 1379 consensus_4216#1 GAATCGAACCCACCTCGCTCAGGAAGCTTATACTGACTTTGATTGATTGAAGCAACAGTT 459 ************* ********************************************** consensus_4216#0 TGGATATGGTAGATTAGATTTACATCCCTGAACCAAAAGGACCATATACTGCTCTTGCAT 1439 consensus_4216#1 TGGATATGGTAGATTAGATTTACATCCCTGAACCAAAANGACCATATACTGCTCTTGCAT 519 ************************************** ********************* consensus_4216#0 GTTGTAAACCTAGTGTATTTGATGT-GCCTCAGCATTGTAATGTTAGAAATCCATTTTCA 1498 consensus_4216#1 GTTGTTAACCNANTGTATTTGANGTTGCCTCCGCATTGTNATGTTNGAAATCCATTT-CN 578 ***** **** * ********* ** ***** ******* ***** *********** * consensus_4216#0 TCCATGTCACTGGAAAACTATGGTTGAAACAACAGTAATAAGTTCTATCATTTATGATGG 1558 consensus_4216#1 TCCATGTTNCTGGAAAACTATNGGTGAAACA-CNGTAATAAATTCTATCCTTTATGATGG 637 ******* ************ * ******* * ******* ******* ********** consensus_4216#0 CATCTGATGATATGAATTAGGG----------- 1580 consensus_4216#1 C-TCTGATGATATGAATTAGGGAAAACNNACNT 669 * ******************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||