cluster # 4225

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Oryza sativa
cluster # 4225 cluster # 4225 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4225#0 length = 699 sequences # 2

consensus_4225#1 length = 466 sequences # 1

consensusID : consensus_4225#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 699
fasta sequence

                              [TGGAGCATACGAACATTTTTTTCTCAAATGCACAAAAGAATTGAGCGTCAATATATACAAACATGCCTCTGGTTTTACCAAACTACCTTTAGAAAAATCAAATACAAATATCATCAGAAGTTATACCTACTGACTTTTCATCTTTAAAGCACAACAATTCACATACCATGTGACCAAATTCAGGTAAATTTAGAATTTCATATCCTACCTACTTAACAAGTAGCTACTAGCACTAACATTCACATTTCGGACACAACAGATAATAGCGCATATTAGCTAGGTGCAAGTTGGCCAATCACAAACATTACAATGATCAATCAACAAACAGAACAAGATGAAACCGAATCAACAATCACCAGACTTAACGTCACCACATTTAAGCTCCTGTCCATTTTAAACTACAATAAATCATAAGACAGTAAAATGGCATTATCGCAACTTGACACTTATGCAAGTATCAGCAAATAAGTAATAGTATTATCACAACTAACTAAACACTTATGCAAGTAGACAACAAATAGGTGATAAATTTATGATAACTAACTAAATACTTATGCA-AGTAAACAAAAATGT-GTTATAACATTATCATAACTAAACTCATTTGCAAGTACACAAATTAGGAAGACATTAACAAAAAGCAC-CAACTGTAAACATTAACTACTA-GTGAACATCGCACTACCACAGCATATAAATCAGTCC]

[+] EMBL CB628397             [TGGAGCATACGAACATTTTTTTCTCAAATGCACAAAAGAATTGAGCGTCAATATATACAAACATGCCTCTGGTTTTACCAAACTACCTTTAGAAAAATCAAATACAAATATCATCAGAAGTTATACCTACTGACTTTTCATCTTTAAAGCACAACAATTCACATACCATGTGACCAAATTCAGGTAAATTTAGAATTTCATATCCTACCTACTTAACAAGTAGCTACTAGCACTAACATTCACATTTCGGACACAACAGATAATAGCGCATATTAGCTAGGTGCAAGTTGGCCAATCACAAACATTACAATGATCAATCAACAAACAGAACAAGATGAAACCGAATCAACAATCACCAGACTTAACGTCACCACATTTAAGCTCCTGTCCATTTTAAACTACAATAAATCATAAGACAGTAAAATGGCATTATCGCAACTTGACACTTATGCAAGTATCAGCAAATAAGTAATAGTATTATCACAACTAACTAAACACTTATGCAAGTAGACAACAAATAGGTGATAAATTTATGATAACTAACTAAATACTTATGCA AGTAAACAAAAATGT GTTATAACATTATCATAACTAAACTCATTTGCAAGTACACAAATTAGGAAGACATTAACAAAAAGCAC CAACTGTAAACATTAACTACTA GTGAACATCGCACTACCACAGCATATAAATCAGTCC]
[+] EMBL CA761599             [       ttttttttTTTTTTTCTCGAAGGCGCAAAAGAATTGAACGTCAATATATACAAACATGCCTCTGTTTTTACCAAACTA CTTTAGAAAAATCAAATACAAATATCATCAGAAGTTATACCTACGGACTTTTCATCTTTAAAACACAACAATTCACATACCATGTGACCAAATTCAGGTAAATTTAGAATTTCATATCCTACCTACTTAACAAGGAGCTACTAGCACTAACATTCACATTTCGGACACAACAGATAATAGCGCATATTAGCTAGGTGCAAGTTGGCCAATCACAAACATTACAATGATCAATCAACAAACAGAACAAGATGCACCCGAATCAACAATCACCAGACTTAACGTCACCACATTTAAGCTCCTGTCCATTTTAAACTACAATAAATCATAAGACAGTAAAATGGCATTATCGCAACTTGACACTTATGCAAGTCTCACCAAATAATTAATAGTATTATCACAACTAACTAAACACTTATGCAAGTAGACAACAAACAGGTGATAAATTTATGATAACTAACTAAATACTTACGCACAGT ACCAAAACGGTGGCTATACCATTATCATAGCTAGACTCATTTGCGAGTACCCAAATTAGAACCACTTTAACCAAATGCCCTTAGGTGTAAGCCTTAACCACCAGGGGAACATCGGACTAac                   ]




>consensus_4225#0
TGGAGCATACGAACATTTTTTTCTCAAATGCACAAAAGAATTGAGCGTCAATATATACAA
ACATGCCTCTGGTTTTACCAAACTACCTTTAGAAAAATCAAATACAAATATCATCAGAAG
TTATACCTACTGACTTTTCATCTTTAAAGCACAACAATTCACATACCATGTGACCAAATT
CAGGTAAATTTAGAATTTCATATCCTACCTACTTAACAAGTAGCTACTAGCACTAACATT
CACATTTCGGACACAACAGATAATAGCGCATATTAGCTAGGTGCAAGTTGGCCAATCACA
AACATTACAATGATCAATCAACAAACAGAACAAGATGAAACCGAATCAACAATCACCAGA
CTTAACGTCACCACATTTAAGCTCCTGTCCATTTTAAACTACAATAAATCATAAGACAGT
AAAATGGCATTATCGCAACTTGACACTTATGCAAGTATCAGCAAATAAGTAATAGTATTA
TCACAACTAACTAAACACTTATGCAAGTAGACAACAAATAGGTGATAAATTTATGATAAC
TAACTAAATACTTATGCAAGTAAACAAAAATGTGTTATAACATTATCATAACTAAACTCA
TTTGCAAGTACACAAATTAGGAAGACATTAACAAAAAGCACCAACTGTAAACATTAACTA
CTAGTGAACATCGCACTACCACAGCATATAAATCAGTCC

consensusID : consensus_4225#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 466
fasta sequence

                              [ACTTAACAAGTAGGTACAAGCACTAACATTCACATTTCGGACACAACAGATAATAGCGCATATTAGCTAGGGGCAAGTTGGCCAATCACAAACATTACAAGGATCAATCAACAAACAGAACAGGATGCAACCGAATCAACAATCACCAAACTTAACGTCACCACATTGAAGCTCCTGTCCATTTTAAACTACAATAAATCAGAAGACAGTAAAATGGCATTATCGCAACTGGACACTTATGCGGGTATCAGCCGAATAAGGAATAGTATTATCACAACTAACTAAGCACTTATGCAAGGAGACGGCAAATAGGGGATAAATTTATGATGACTAACTAAATACTTATGCAGGGAAACAAAAAGGGGGTAGTACATTATCGATACTAAACGCATTTGGAGGGACCCAAATGACGGAAGACCTTAACAAGAAGGCGCCACAGGGGGAAAATTAACCTAGTAAGTGAACA]

[+] EMBL CA761568             [ACTTAACAAGTAGGTACAAGCACTAACATTCACATTTCGGACACAACAGATAATAGCGCATATTAGCTAGGGGCAAGTTGGCCAATCACAAACATTACAAGGATCAATCAACAAACAGAACAGGATGCAACCGAATCAACAATCACCAAACTTAACGTCACCACATTGAAGCTCCTGTCCATTTTAAACTACAATAAATCAGAAGACAGTAAAATGGCATTATCGCAACTGGACACTTATGCGGGTATCAGCCGAATAAGGAATAGTATTATCACAACTAACTAAGCACTTATGCAAGGAGACGGCAAATAGGGGATAAATTTATGATGACTAACTAAATACTTATGCAGGGAAACAAAAAGGGGGTAGTACATTATCGATACTAAACGCATTTGGAGGGACCCAAATGACGGAAGACCTTAACAAGAAGGCGCCACAGGGGGAAAATTAACCTAGTAAGTGAACA]




>consensus_4225#1
ACTTAACAAGTAGGTACAAGCACTAACATTCACATTTCGGACACAACAGATAATAGCGCA
TATTAGCTAGGGGCAAGTTGGCCAATCACAAACATTACAAGGATCAATCAACAAACAGAA
CAGGATGCAACCGAATCAACAATCACCAAACTTAACGTCACCACATTGAAGCTCCTGTCC
ATTTTAAACTACAATAAATCAGAAGACAGTAAAATGGCATTATCGCAACTGGACACTTAT
GCGGGTATCAGCCGAATAAGGAATAGTATTATCACAACTAACTAAGCACTTATGCAAGGA
GACGGCAAATAGGGGATAAATTTATGATGACTAACTAAATACTTATGCAGGGAAACAAAA
AGGGGGTAGTACATTATCGATACTAAACGCATTTGGAGGGACCCAAATGACGGAAGACCT
TAACAAGAAGGCGCCACAGGGGGAAAATTAACCTAGTAAGTGAACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4225#0      TGGAGCATACGAACATTTTTTTCTCAAATGCACAAAAGAATTGAGCGTCAATATATACAA 60
consensus_4225#1      ------------------------------------------------------------
                                                                                  

consensus_4225#0      ACATGCCTCTGGTTTTACCAAACTACCTTTAGAAAAATCAAATACAAATATCATCAGAAG 120
consensus_4225#1      ------------------------------------------------------------
                                                                                  

consensus_4225#0      TTATACCTACTGACTTTTCATCTTTAAAGCACAACAATTCACATACCATGTGACCAAATT 180
consensus_4225#1      ------------------------------------------------------------
                                                                                  

consensus_4225#0      CAGGTAAATTTAGAATTTCATATCCTACCTACTTAACAAGTAGCTACTAGCACTAACATT 240
consensus_4225#1      ------------------------------ACTTAACAAGTAGGTACAAGCACTAACATT 30
                                                    ************* *** ************

consensus_4225#0      CACATTTCGGACACAACAGATAATAGCGCATATTAGCTAGGTGCAAGTTGGCCAATCACA 300
consensus_4225#1      CACATTTCGGACACAACAGATAATAGCGCATATTAGCTAGGGGCAAGTTGGCCAATCACA 90
                      ***************************************** ******************

consensus_4225#0      AACATTACAATGATCAATCAACAAACAGAACAAGATGAAACCGAATCAACAATCACCAGA 360
consensus_4225#1      AACATTACAAGGATCAATCAACAAACAGAACAGGATGCAACCGAATCAACAATCACCAAA 150
                      ********** ********************* **** ******************** *

consensus_4225#0      CTTAACGTCACCACATTTAAGCTCCTGTCCATTTTAAACTACAATAAATCATAAGACAGT 420
consensus_4225#1      CTTAACGTCACCACATTGAAGCTCCTGTCCATTTTAAACTACAATAAATCAGAAGACAGT 210
                      ***************** ********************************* ********

consensus_4225#0      AAAATGGCATTATCGCAACTTGACACTTATGCAAGTATCAGC-AAATAAGTAATAGTATT 479
consensus_4225#1      AAAATGGCATTATCGCAACTGGACACTTATGCGGGTATCAGCCGAATAAGGAATAGTATT 270
                      ******************** ***********  ********  ****** *********

consensus_4225#0      ATCACAACTAACTAAACACTTATGCAAGTAGACAACAAATAGGTGATAAATTTATGATAA 539
consensus_4225#1      ATCACAACTAACTAAGCACTTATGCAAGGAGACGGCAAATAGGGGATAAATTTATGATGA 330
                      *************** ************ ****  ******** ************** *

consensus_4225#0      CTAACTAAATACTTATGCAAGTAAACAAAAATGTGTTATAACATTATCATAACTAAACTC 599
consensus_4225#1      CTAACTAAATACTTATGCAGGGAAACAAAAAGGGGGTAGTACATTATCGATACTAAACGC 390
                      ******************* * ********* * * **  ********   ******* *

consensus_4225#0      ATTTGCAAGTACACAAATTA-GGAAGACATTAACAAAAAG-CACCA-ACTGTAAACATTA 656
consensus_4225#1      ATTTGGAGGGACCCAAATGACGGAAGACCTTAACAAGAAGGCGCCACAGGGGGAAAATTA 450
                      ***** * * ** ***** * ******* ******* *** * *** *  *  ** ****

consensus_4225#0      ACT--ACTAGTGAACATCGCACTACCACAGCATATAAATCAGTCC 699
consensus_4225#1      ACCTAGTAAGTGAACA----------------------------- 466
                      **      ********