cluster # 4230

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Oryza sativa
cluster # 4230 cluster # 4230 Sequences # 3 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4230#0 length = 1348 sequences # 3
consensusID : consensus_4230#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1348
fasta sequence
                              [AATCACAAGCAACATCACCACAGATCGATCGAGACAGCTACTGACATCAACGTGAAAAAGGGAAGAAGAACTAACCATGTCCATGCAGGAGATGCTCCGCATTGGAGACGACGACGGCCGGAGCGATGCTCTGGAACGCGAGCTCAAGGAGAAGCTGAGGTTGCGCGGCGATGCCTCACCGGCGAAATGCACCAGGCAGGAGCAGCGGTGGCGGTCTGATCATGGCATCGTCGACGCCCGCGAGAGGTTCGTGCAGGCGTACGGCCGCCTCAGGGACGATCTCGTCGGCGACGACTCGTGCGAGCTCACCGACGAAGCCAGGCGCTGGCTTGCTCAGATGATCGACTACAATGTACCTGGAGGAAAGTTGAACCGAGGGCTGTCAGTGATAGACAGTTACCTGCTGTTGAAACAAGGAAGTGAGGTTACTGAAGATGACTTCTTCCTTGCTTGTGTGCTTGGTTGGTGTGTAGAATGGTTTCAAGCATGTGCACTACTACTTGATGACATCATGGACGATTCACATACCAGGAGAGATCAGATTTGCTGGTACCGGCGACCTGAGGTTGGCCTCAGGGGTATAAACGATGGTATCATACTAAAATGTCACATCTTGATAATGATAAAAAAGTATTTCAGAGAAAAGCCTTACTTTCTTGATCTCTTAGAAATATGGAGCGAGATAGCTC-TGCAGACTTCTCTGGGGC-AGATGCTTGATCTTATTGGCACACATACTGGAGCAGATGATCTTGCAAAATACAGTATTGAAGGCTACCGTCGCATTGTTAAGTACAAGACAGCGTACTACTCCTTTTACCTTCCTGTGGCCAATGCTTTGCTCTTATCTGGCGCAAAACTTGAAGACTTCAGTGGTCTAAAGGATATACTTATTGAAATGGGCATATATTTTCAGATACAGGATGACTACTTGGACTGTTTTGCTGACCCTAACACCATAGGCAAGATTGGAACTGACATCGAAGATCATAAGTGTTCCTGGTTAATAGTACAGGCTCTTGGTCATGCCGACAACAATCAAATAGAAGTACTACATAGGAACTATGGCAAGAAGGATTCAAGTTCTGTTTCCGAAGTAAAGAGGACTTACGCGGCGCTTGATTTGAAAGATATCTTCTCCGAGTTCGAACGTCGATGCTACAACCACCTGGTCACCTCTATCGAAGCTCAGAAGGATCATGCAGCACGGGAGATCCTGAAATCATTTCTGAAGAAAATTCATCAAAGGAAGAAGTAGTTAATAAGTTATAACAATTATGACCTGTATGAGCTTATGGTAACATTTAAAAATGATCGAAATCTATCTCCCCATAAGTTATAATAACACTAT]

[+] EMBL AK072747             [AATCACAAGCAACATCACCACAGATCGATCGAGACAGCTACTGACATCAACGTGAAAAAGGGAAGAAGAACTAACCATGTCCATGCAGGAGATGCTCCGCATTGGAGACGACGACGGCCGGAGCGATGCTCTGGAACGCGAGCTCAAGGAGAAGCTGAGGTTGCGCGGCGATGCCTCACCGGCGAAATGCACCAGGCAGGAGCAGCGGTGGCGGTCTGATCATGGCATCGTCGACGCCCGCGAGAGGTTCGTGCAGGCGTACGGCCGCCTCAGGGACGATCTCGTCGGCGACGACTCGTGCGAGCTCACCGACGAAGCCAGGCGCTGGCTTGCTCAGATGATCGACTACAATGTACCTGGAGGAAAGTTGAACCGAGGGCTGTCAGTGATAGACAGTTACCTGCTGTTGAAACAAGGAAGTGAGGTTACTGAAGATGACTTCTTCCTTGCTTGTGTGCTTGGTTGGTGTGTAGAATGGTTTCAAGCATGTGCACTACTACTTGATGACATCATGGACGATTCACATACCAGGAGAGATCAGATTTGCTGGTACCGGCGACCTGAGGTTGGCCTCAGGGGTATAAACGATGGTATCATACTAAAATGTCACATCTTGATAATGATAAAAAAGTATTTCAGAGAAAAGCCTTACTTTCTTGATATCTTAGAAATATGGAGCGAGATAGCTC TGCAGACTTCTCTGGGGC AGATGCTTGATCTTATTAGCACACATACTGGAGCAGATGATCTTGCAAAATACAGTATTGAAGGCTACCGTCGCATTGTTAAGTACAAGACAGCGTACTACTCCTTTTACCTTCCTGTGGCCAATGCTTTGCTCTTATCTGGCGCAAAACTTGAAGACTTCAGTGGTCTAAAGGATATACTTATTGAAATGGGCATATATTTTCAGATACAGGATGACTACTTGGACTGTTTTGCTGACCCTAACACCATAGGCAAGATTGGAACTGACATCGAAGATCATAAGTGTTCCTGGTTAATAGTACAGGCTCTTGGTCATGCTGACAACAATCAAATAGAAGTACTACATAGGAACTATGGCAAGAAGGATTCAAGTTCTGTTTCCGAAGTAAAGAGGACTTACGCGGCGCTTGATTTGAAAGATATCTTCTCCGAGTTCGAACGTCGATGCTACAACCACCTGGTCACCTCTATCGAAGCTCAGAAGGATCATGCAGCACGGGAGATCCTGATATCATTTCTGAAGAAAATTCATCAAAGGAAGAAGTAGTTAATAAGTTATAACAATTATGACCTGTATGAGCTTATGGTAACATTTAAAAATGATCGAAATCTATCTCCCCATAAGTTATAATAACACTAT]
[-] EMBL CA763445             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGCCCTAC TTCTTGATCTCTTAGAAATATGGAGCGAGATAGCTCTTGCAAACTTCTCTGGGGCAAGATGCTTGATTTTATTGGCACCCATACTGGAGCAGATGATCTTGCAAAATCCAGTATTGAAGGCTACCGTCGCATTGTTAAGTACAAGACAGCGTACTACTCCTTTTACCTTCCTGTGGCCAATGCTTTGCTCTTATCTGGCGCAAAACTTGAAGACTTCAGTGGTCTAAAGGATATACTTATTGAAATGGGCATATATTTTCAGATACAGGATGACTACTTGGACTGTTTTGCTGACCCTAACACCATAGGCAAGATTGGAACTGACATCGAAGATCATAAGTGTTCCTGGTTAATAGTACAGGCTCTTGGTCATGCCGACAACAATCAAATAGAAGTACTACATAGGAACTATGGCAAGAAGGATTCAAGTTCTGTTTCCGAAGTAAAGAGGACTTACGCGGCGCTTGATTTGAAAGATATCTTCTCCGAGTTCGAACGTCGATGCTACAACCACCTGGTCACCTCTATCGAAGCTCAGAAGGATCATGCAGCACGGGAGATCCTGAAATCATTTCTGAAGAAAATTCATCAAAGGAAGAAGTAGTTAATAAGTTATAACAATTATGACCTGTATGAGCTTATGGTAACATTTAAAAATGATCGAAAaaaaaaaaa                      ]
[+] EMBL CA767063             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TACTTTCTTGATCTCTTAGAAATATGGAGCGAGATAGCTC TGCAGACTTCTCTGGGGC AGATGCTTGATCTTATTGGCACACATACTGGAGCAGATGATCTTGCAAAATACAGTATTGAAGGCTACCGTCGCATTGTTAAGTACAAGACAGCGTACTACTCCTTTTACCTTCCTGTGGCCAATGCTTTGCTCTTATCTGGCGCAAAACTTGAAGACTTCAGTGGTCTAAAGGATATACTTATTGAAATGGGCATATATTTTCAGATACAGGATGACTACTTGGACTGTTTTGCTGACCCTAACACCATAGGCAAGATTGGAACTGACATCGAAGATCATAAGTGTTCCTGGTTAATAGTACAGGCTCTTGGTCATGCCGACAACAATCAAATAGAAGTACTACATAGGAACTATGGCAAGAAGGATTCAAGTTCTGTTTCCGAAGTAAAGAGGACTTACGCGGCGCTTGATTTGAAAGATATCTTCTCCGAGTTCGAACGTCGATGCTACAACCACCTGGTCACCTCTATCGAAGCTCAGAAGGATCATGCAGCACGGGAGATCCTGAAATCATTTCTGAAGAAAATTCATCAAAGGAAGAAGTAGTTAATAAGNTATAACAATTATGACCTGTATGAGCTTATGGTAACATTTAAAAATG                                      ]




>consensus_4230#0
AATCACAAGCAACATCACCACAGATCGATCGAGACAGCTACTGACATCAACGTGAAAAAG
GGAAGAAGAACTAACCATGTCCATGCAGGAGATGCTCCGCATTGGAGACGACGACGGCCG
GAGCGATGCTCTGGAACGCGAGCTCAAGGAGAAGCTGAGGTTGCGCGGCGATGCCTCACC
GGCGAAATGCACCAGGCAGGAGCAGCGGTGGCGGTCTGATCATGGCATCGTCGACGCCCG
CGAGAGGTTCGTGCAGGCGTACGGCCGCCTCAGGGACGATCTCGTCGGCGACGACTCGTG
CGAGCTCACCGACGAAGCCAGGCGCTGGCTTGCTCAGATGATCGACTACAATGTACCTGG
AGGAAAGTTGAACCGAGGGCTGTCAGTGATAGACAGTTACCTGCTGTTGAAACAAGGAAG
TGAGGTTACTGAAGATGACTTCTTCCTTGCTTGTGTGCTTGGTTGGTGTGTAGAATGGTT
TCAAGCATGTGCACTACTACTTGATGACATCATGGACGATTCACATACCAGGAGAGATCA
GATTTGCTGGTACCGGCGACCTGAGGTTGGCCTCAGGGGTATAAACGATGGTATCATACT
AAAATGTCACATCTTGATAATGATAAAAAAGTATTTCAGAGAAAAGCCTTACTTTCTTGA
TCTCTTAGAAATATGGAGCGAGATAGCTCTGCAGACTTCTCTGGGGCAGATGCTTGATCT
TATTGGCACACATACTGGAGCAGATGATCTTGCAAAATACAGTATTGAAGGCTACCGTCG
CATTGTTAAGTACAAGACAGCGTACTACTCCTTTTACCTTCCTGTGGCCAATGCTTTGCT
CTTATCTGGCGCAAAACTTGAAGACTTCAGTGGTCTAAAGGATATACTTATTGAAATGGG
CATATATTTTCAGATACAGGATGACTACTTGGACTGTTTTGCTGACCCTAACACCATAGG
CAAGATTGGAACTGACATCGAAGATCATAAGTGTTCCTGGTTAATAGTACAGGCTCTTGG
TCATGCCGACAACAATCAAATAGAAGTACTACATAGGAACTATGGCAAGAAGGATTCAAG
TTCTGTTTCCGAAGTAAAGAGGACTTACGCGGCGCTTGATTTGAAAGATATCTTCTCCGA
GTTCGAACGTCGATGCTACAACCACCTGGTCACCTCTATCGAAGCTCAGAAGGATCATGC
AGCACGGGAGATCCTGAAATCATTTCTGAAGAAAATTCATCAAAGGAAGAAGTAGTTAAT
AAGTTATAACAATTATGACCTGTATGAGCTTATGGTAACATTTAAAAATGATCGAAATCT
ATCTCCCCATAAGTTATAATAACACTAT
clustalw multiple alignements is not computed in this case