These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4231#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 566 fasta sequence [GAGGACGCAGCCATCCATCCATCCACCCAGCCCCCACACTCCTTCGGCGCGCGCGTCCGTCCTCGATCGCGCGCGCGTCGACGAGCTAAGCCGGCCCGGGAAACCCAAGGCCCCTCTCCCTTCCTCAAGCGCGCCGGCGGGCCTCGCCGGNGANNCNATTTGGAGCTCAACCCCCCCGTCGTAGTCGCACGTCGAGCGCCACCACCACCGCCAGCGCGTCGCATCGTACGTCCTCCACGCGCGGCGCCGTGCTAGGCAACCTCCTCTGCTGATCGCCCGCCTCCTCATGAGCGTGTGACCTGCTGTCGAATGGTGCGGCGGCACTTGCTTGCGCGGACACAGCCTGGACANGTTCCTGCCGATCAGGAGCCTCATCATGTCGTCAAGCTCTTNCTTCTCGTCGTCGTCTCCGTCGCCGCCGCCGCCGTCGTCGTCGTCGTCACGGGGAAGCAGCAGCGGCAGGTGGTGCGGCGTCACGTGGCCGAGGAGGACGAGGACGATGCCGCCGTCTCCGCGACGACGACCCCGCCACTGCCGCCGCTGCAGAAGCGGGTGCTGTCGAGGAG] [+] EMBL C72728 [GAGGACGCAGCCATCCATCCATCCACCCAGCCCCCACACTCCTTCGGCGCGCGCGTCCGTCCTCGATCGCGCGCGCGTCGACGAGCTAAGCCGGCCCGGGAAACCCAAGGCCCCTCTCCCTTCCTCAAGCGCGCCGGCGGGCCTCGCCGGNGANNCNATTTGGAGCTCAACCCCCCCGTCGTAGTCGCACGTCGAGCGCCACCACCACCGCCAGCGCGTCGCATCGTACGTCCTCCACGCGCGGCGCCGTGCTAGGCAACCTCCTCTGCTGATCGCCCGCCTCCTCATGAGCGTGTGACCTGCTGTCGAATGGTGCGGCGGCACTTGCTTGCGCGGACACAGCCTGGACANGTTCCTGCCGATCAGGAGCCTCATCATGTCGTCAAGCTCTTNCTTCTC ] [+] EMBL AU077589 [ TCGAATGGTGCGGCGGCACCTGC TGCGCGGACACAGCCTGGACAGGTTCCTGCCGATCAGGAGCCTCATCATGTCGTCCAGCTCTTCCTTCTCGTCGTCGTCTCCGTCGCCGCCGCCGCCGTCGTCGTCGTCGTCACGGGGAAGCAGCAGCGGCAGGTGGTGCGGCGTCACGTGGCCGAGGAGGACGAGGACGATGCCGCCGTCTCCGCGACGACGACCCCGCCACTGCCGCCGCTGCAGAAGCGGGTGCTGTCGAGGAG] consensusID : consensus_4231#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 359 fasta sequence [TGCGTGCGTGTGGTTTCCAACTTTGGCTCGCCCCTCCGGGCGCAAACACCACAACACCTCGCGCCCATGCGAGGACGCAGCCATCCATCCATCCACCCAGCCCCCACACTCCTTCGGCGCGCGCGTCCGTCCTCGATCGCGCGCGCGTCGACGAGCTAAGCCGGCCCGGGAAACCCAAGGCCCCTCTCCCTTCCTCAAGNGCGCCGGCGGGCCTCGCGCGAANNCNATTTGAGCTCAACCCCCCCGTCGTAGTCGCACGTCGAGCGCCAACAACAACGGCAACGCGTCGATCGTANGTTCTTCAAGCGCGGGGCGTGCTAAGNAACTTCTCTGCTGATTGNCCGCTTCTCATGAANGTG] [+] EMBL C73102 [TGCGTGCGTGTGGTTTCCAACTTTGGCTCGCCCCTCCGGGCGCAAACACCACAACACCTCGCGCCCATGCGAGGACGCAGCCATCCATCCATCCACCCAGCCCCCACACTCCTTCGGCGCGCGCGTCCGTCCTCGATCGCGCGCGCGTCGACGAGCTAAGCCGGCCCGGGAAACCCAAGGCCCCTCTCCCTTCCTCAAGNGCGCCGGCGGGCCTCGCGCGAANNCNATTTGAGCTCAACCCCCCCGTCGTAGTCGCACGTCGAGCGCCAACAACAACGGCAACGCGTCGATCGTANGTTCTTCAAGCGCGGGGCGTGCTAAGNAACTTCTCTGCTGATTGNCCGCTTCTCATGAANGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4231#0 ------------------------------------------------------------ consensus_4231#1 TGCGTGCGTGTGGTTTCCAACTTTGGCTCGCCCCTCCGGGCGCAAACACCACAACACCTC 60 consensus_4231#0 ----------GAGGACGCAGCCATCCATCCATCCACCCAGCCCCCACACTCCTTCGGCGC 50 consensus_4231#1 GCGCCCATGCGAGGACGCAGCCATCCATCCATCCACCCAGCCCCCACACTCCTTCGGCGC 120 ************************************************** consensus_4231#0 GCGCGTCCGTCCTCGATCGCGCGCGCGTCGACGAGCTAAGCCGGCCCGGGAAACCCAAGG 110 consensus_4231#1 GCGCGTCCGTCCTCGATCGCGCGCGCGTCGACGAGCTAAGCCGGCCCGGGAAACCCAAGG 180 ************************************************************ consensus_4231#0 CCCCTCTCCCTTCCTCAAGCGCGCCGGCGGGCCTCGCCGGNGANNCNATTTGGAGCTCAA 170 consensus_4231#1 CCCCTCTCCCTTCCTCAAGNGCGCCGGCGGGCCTCGC--GCGAANNCNATTTGAGCTCAA 238 ******************* ***************** * ** * ** ******** consensus_4231#0 CCCCCCCGTCGTAGTCGCACGTCGAGCGCCACCACCACCGCCAGCGCGTCGCATCGTACG 230 consensus_4231#1 CCCCCCCGTCGTAGTCGCACGTCGAGCGCCAACAACAACGGCAACGCGTCG-ATCGTANG 297 ******************************* ** ** ** ** ******* ****** * consensus_4231#0 TCCTCCACGCGCGGCGCCGTGCTAGGCAACCTCCTCTGCTGATCGCCCGCCTCCTCATGA 290 consensus_4231#1 TTCTTCAAGCGCGGGGC-GTGCTAAGNAACTTC-TCTGCTGATTGNCCGCTTC-TCATGA 354 * ** ** ****** ** ****** * *** ** ********* * **** ** ****** consensus_4231#0 GCGTGTGACCTGCTGTCGAATGGTGCGGCGGCACTTGCTTGCGCGGACACAGCCTGGACA 350 consensus_4231#1 ANGTG------------------------------------------------------- 359 *** consensus_4231#0 NGTTCCTGCCGATCAGGAGCCTCATCATGTCGTCAAGCTCTTNCTTCTCGTCGTCGTCTC 410 consensus_4231#1 ------------------------------------------------------------ consensus_4231#0 CGTCGCCGCCGCCGCCGTCGTCGTCGTCGTCACGGGGAAGCAGCAGCGGCAGGTGGTGCG 470 consensus_4231#1 ------------------------------------------------------------ consensus_4231#0 GCGTCACGTGGCCGAGGAGGACGAGGACGATGCCGCCGTCTCCGCGACGACGACCCCGCC 530 consensus_4231#1 ------------------------------------------------------------ consensus_4231#0 ACTGCCGCCGCTGCAGAAGCGGGTGCTGTCGAGGAG 566 consensus_4231#1 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||