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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4237#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1803 fasta sequence
[ATCCTCCTACTCTCTCATCTCCCACTCCTCGTCGCTAGATGGGGCGAGGATCTCAGTGGTGGCGACGAGCTACGCCGCCGCTGCCGTATTTCTCCTCGAGCGGCGGCTGCGCTCCCTTCCACCACCGCAGCCGCCGACTTCCGCTGGGGACCAAACCCTAGTCGCGCGGAGACCCGCGCTTCGTCTCTTCTGGGAGTTCCGGCGAGTCCTTGTCGATGAAGAAGGACGATGACTATGGCTCGGTCACAATCTTCCACGACGCGCGCTCGCCCGAGCACGTCTTCCAGGACTTCTGTCGCCGCTGCGCTGGCATCATCAAGGCCCTCACCACCGGTATCTCTCTCTTTCTATCTCCTCTCTCTATCAATCTATCTATGTGTTTCTGCATTTGTTGGTGTGGAGGTTCAATTCGTCGTTGTTTAGTTGTTGTGCAGACGTGGGAAAGCTCTACAAGCTGAAGTTGTGCGACCATGGTGAGTAAATAATTGTTAGAGTAGTAGCACACATATATAGTAGAACCATTATTTTTTTTTCTCATGAGCGTTAGTTACATGCTATACTTTTTTATTACGTTAAGATGACATAATTATTGTGAGAAATAATTTTAGTATGCAGAAAAAAAAAATTAGAAGTGTATACATAGACAGAAACCATGCGAATGTTGTTATTCTAGCAGCTATGCACTTTTATTATCAGTGCAATGTTTTGTTAGCTATAGGCAACTTGCTTTTGGCTGAGCAGCTTTGAATCTATTTGTCATATATGGGCTAGCAGTAACTGTGCTTATTCACATAGTGAGAACATTGAGCTCATATGCAAAGAATCTGAGATTGTCCTGTTTTTGTGGTTCCCCTAAAAAATATTACAGTAACATGTTTCTTATCCACATGATAAAAGTTAGAGCTCAAGTATATCAAATGATTGTGAAGTGAAACAATTTATATTTGTAAACGGGAAAAAATATGGACAAAATCAAATTCTTCTTCCTCCTCCTCTGCACTGCTTAAAAAGAGTGAAAGCTTAACTTTACACTGCTCTGCGACCAGGTTACACATATAAATATTCTTTTTTTTCTCGAACAGCATATACACACTCGCATGTATGTAACTTTAGTATCACAGATCAGAGGGTTACCACATAAACCAAAAAAGATATATTCATCTTTCAGTTTAACTAAAAACTTATAAAAAAACACTTCAGTATCAGGAAAGTGAGTATCTGACACAATTATCCTGATATCTGACAAACAAAAAACATTAGGTATGCAAAATCAAGTATCATAGGGATTGGGCATCAAGTCTGACTCTTTCATTTCACTATGAGTGTAATGGTATATATAGTCCTACCGTTTTACTCTTTTATTTTTCCTCTTGCTTTCTCTGTGAACATAACAATATATCAAGTTAACTTATAACTACTTTACTTATCTTTTTTTCTAGGGAAATTCGTTCATTCACTGTAAGTATCAAGGGATAAAGATTGTGCATCCGCACAATGAGCTGTATCACGGATGCTGTAATGAAATGGTTCGATGGGAACATAGCATCAACCCTGAAATCTTTATCAATGCATACGATTGCTATGTCAATATGACGTGTTAGATTTATTTTGATCCCAAAATGGACGCCAGGATTGCTGAGATGGATCCAATGGATGATAATGAGGATGGTTTCACCGAGTTGGTATGGCAGGATATGTTGATAGACAACTTCTATGAAAACGATGTGATTCTTCTTTGTGCCTGAATGTTCGTTTATGTATTTATATTTGTTGTCCTTTGTTATCAGCTTTTTAAAATGGAAG]
[+] EMBL AK067445 [ATCCTCCTACTCTCTCATCTCCCACTCCTCGTCGCTAGATGGGGCGAGGATCTCAGTGGTGGCGACGAGCTACGCCGCCGCTGCCGTATTTCTCCTCGAGCGGCGGCTGCGCTCCCTTCCACCACCGCAGCCGCCGACTTCCGCTGGGGACCAAACCCTAGTCGCGCGGAGACCCGCGCTTCGTCTCTTCTGGGAGTTCCGGCGAGTCCTTGTCGATGAAGAAGGACGATGACTATGGCTCGGTCACAATCTTCCACGACGCGCGCTCGCCCGAGCACGTCTTCCAGGACTTCTGTCGCCGCTGCGCTGGCATCATCAAGGCCCTCACCACCGGTATCTCTCTCTTTCTATCTCCTCTCTCTATCAATCTATCTATGTGTTTCTGCATTTGTTGGTGTGGAGGTTCAATTCGTCGTTGTTTAGTTGTTGTGCAGACGTGGGAAAGCTCTACAAGCTGAAGTTGTGCGACCATGGTGAGTAAATAATTGTTAGAGTAGTAGCACACATATATAGTAGAACCATTATTTTTTTTTCTCATGAGCGTTAGTTACATGCTATACTTTTTTATTACGTTAAGATGACATAATTATTGTGAGAAATAATTTTAGTATGCAGAAAAAAAAAATTAGAAGTGTATACATAGACAGAAACCATGCGAATGTTGTTATTCTAGCAGCTATGCACTTTTATTATCAGTGCAATGTTTTGTTAGCTATAGGCAACTTGCTTTTGGCTGAGCAGCTTTGAATCTATTTGTCATATATGGGCTAGCAGTAACTGTGCTTATTCACATAGTGAGAACATTGAGCTCATATGCAAAGAATCTGAGATTGTCCTGTTTTTGTGGTTCCCCTAAAAAATATTACAGTAACATGTTTCTTATCCACATGATAAAAGTTAGAGCTCAAGTATATCAAATGATTGTGAAGTGAAACAATTTATATTTGTAAACGGGAAAAAATATGGACAAAATCAAATTCTTCTTCCTCCTCCTCTGCACTGCTTAAAAAGAGTGAAAGCTTAACTTTACACTGCTCTGCGACCAGGTTACACATATAAATATTCTTTTTTTTCTCGAACAGCATATACACACTCGCATGTATGTAACTTTAGTATCACAGATCAGAGGGTTACCACATAAACCAAAAAAGATATATTCATCTTTCAGTTTAACTAAAAACTTATAAAAAAACACTTCAGTATCAGGAAAGTGAGTATCTGACACAATTATCCTGATATCTGACAAACAAAAAACATTAGGTATGCAAAATCAAGTATCATAGGGATTGGGCATCAAGTCTGACTCTTTCATTTCACTATGAGTGTAATGGTATATATAGTCCTACCGTTTTACTCTTTTATTTTTCCTCTTGCTTTCTCTGTGAACATAACAATATATCAAGTTAACTTATAACTACTTTACTTATCTTTTTTTCTAGGGAAATTCGTTCATTCACTGTAAGTATCAAGGGATAAAGATTGTGCATCCGCACAATGAGCTGTATCACGGATGCTGTAATGAAATGGTTCGATGGGAACATAGCATCAACCCTGAAATCTTTATCAATGCATACGATTGCTATGTCAATATGACGTGTTAGATTTATTTTGATCCCAAAATGGACGCCAGGATTGCTGAGATGGATCCAATGGATGATAATGAGGATGGTTTCACCGAGTTGGTATGGCAGGATATGTTGATAGACAACTTCTATGAAAACGATGTGATTCTTCTTTGTGCCTGAATGTTCGTTTATGTATTTATATTTGTTGTCCTTTGTTATCAGCTTTTTAAAATGGAAG]
consensusID : consensus_4237#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 492 fasta sequence
[NGNNANCGATTGACTATGGCTCGGTCACAATCTTCCACGACGCGCGCNCGCCCGAGCACGTCTTCCAGGACTTCTGTCGCCGCTGCGCTGGCATCATCAAGGCCCTCACCACCGTTGTTGTGCAGACGTGGGAAAGCTCTACAAGCTGAAGTTGTGCGACCATGGGAAATTCGTTCATTCACTGTAAGTATCAAGGGATAAAGATTGTGCATNCGCACAATGAGCTGTATCACGGATGCNGTAATGAAATGGTTCGATGGG-ACATAGCATCAACCCTGAAATCTTTATCAATGCATACGATTGCTATGTCAATATGACGTGTTAGATTTATTTTGATCCCAAAATGGACGCCAGGATTGCTGAGATGGATCCAATGGATGATAATGAGGATGGTTTCACCGAGTTGGTATGGCAGGATATGTTGATAGACAACTTCTATGAAAACGATGTGATTCTTCTTTGTGCCTGAATGTTCGTTTATGTATTTAAAAA]
[+] EMBL C73581 [NGNNANCGATTGACTATGGCTCGGTCACAATCTTCCACGACGCGCGCNCGCCCGAGCACGTCTTCCAGGACTTCTGTCGCCGCTGCGCTGGCATCATCAAGGCCCTCACCACCGTTGTTGTGCAGACGTGGGAAAGCTCTACAAGCTGAAGTTGTGCGACCATGGGAAATTCGTTCATTCACTGTAAGTATCAAGGGATAAAGATTGTGCATNCGCACAATGAGCTGTATCACGGATGCNGTAATGAAATGGTTCGATGGG ACATAGCATCAACCCTGAAATCTTTATCAA ]
[+] EMBL AU101338 [ CTATGGCTCGGTCACAATCTTCCACGACGCGCGCTCGCCCGAGCACGTCTTCCAGGACTTCTGTCG ACTGCGCTGGCATCATCAAGGCCCTCACCACCGTTGTTGTGCAGACGTGGGAAAGCTCTACAAGCTGAAGTTGTGCGACCATGGGAAATTCGTTCATTCACTGTAAGTATCAAGGGATAAAGATTGTGCATCCGCACAATGAGCTGTATCACGGATGCTGTAATGAAATGGTTCGATGGGAACATAGCATCAACCCTGAAATCTTTATCAATGCATACGATTGCTATGTCAATATGACGTGTTAGATTTATTTTGATCCCAAAATGGACGCCAGGATTGCTGAGATGGATCCAATGGATGATAATGAGGATGGTTTCACCGAGTTGGTATGGCAGGATATGTTGATAGACAACTTCTATGAAAACGATGTGATTCTTCTTTGTGCCTGAATGTTCGTTTATGTATTTAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4237#0 ATCCTCCTACTCTCTCATCTCCCACTCCTCGTCGCTAGATGGGGCGAGGATCTCAGTGGT 60
consensus_4237#1 ------------------------------------------------------------
consensus_4237#0 GGCGACGAGCTACGCCGCCGCTGCCGTATTTCTCCTCGAGCGGCGGCTGCGCTCCCTTCC 120
consensus_4237#1 ------------------------------------------------------------
consensus_4237#0 ACCACCGCAGCCGCCGACTTCCGCTGGGGACCAAACCCTAGTCGCGCGGAGACCCGCGCT 180
consensus_4237#1 ------------------------------------------------------------
consensus_4237#0 TCGTCTCTTCTGGGAGTTCCGGCGAGTCCTTGTCGATGAAGAAGGACGATGACTATGGCT 240
consensus_4237#1 ------------------------------------------------------------
consensus_4237#0 CGGTCACAATCTTCCACGACGCGCGCTCGCCCGAGCACGTCTTCCAGGACTTCTGTCGCC 300
consensus_4237#1 ------------------------------------------------------------
consensus_4237#0 GCTGCGCTGGCATCATCAAGGCCCTCACCACCGGTATCTCTCTCTTTCTATCTCCTCTCT 360
consensus_4237#1 ------------------------------------------------------------
consensus_4237#0 CTATCAATCTATCTATGTGTTTCTGCATTTGTTGGTGTGGAGGTTCAATTCGTCGTTGTT 420
consensus_4237#1 ------------------------------------------------------------
consensus_4237#0 TAGTTGTTGTGCAGACGTGGGAAAGCTCTACAAGCTGAAGTTGTGCGACCATGGTGAGTA 480
consensus_4237#1 ------------------------------------------------------------
consensus_4237#0 AATAATTGTTAGAGTAGTAGCACACATATATAGTAGAACCATTATTTTTTTTTCTCATGA 540
consensus_4237#1 ------------------------------------------------------------
consensus_4237#0 GCGTTAGTTACATGCTATACTTTTTTATTACGTTAAGATGACATAATTATTGTGAGAAAT 600
consensus_4237#1 ------------------------------------------------------------
consensus_4237#0 AATTTTAGTATGCAGAAAAAAAAAATTAGAAGTGTATACATAGACAGAAACCATGCGAAT 660
consensus_4237#1 ------------------------------------------------------------
consensus_4237#0 GTTGTTATTCTAGCAGCTATGCACTTTTATTATCAGTGCAATGTTTTGTTAGCTATAGGC 720
consensus_4237#1 ------------------------------------------------------------
consensus_4237#0 AACTTGCTTTTGGCTGAGCAGCTTTGAATCTATTTGTCATATATGGGCTAGCAGTAACTG 780
consensus_4237#1 ------------------------------------------------------------
consensus_4237#0 TGCTTATTCACATAGTGAGAACATTGAGCTCATATGCAAAGAATCTGAGATTGTCCTGTT 840
consensus_4237#1 ------------------------------------------------------------
consensus_4237#0 TTTGTGGTTCCCCTAAAAAATATTACAGTAACATGTTTCTTATCCACATGATAAAAGTTA 900
consensus_4237#1 ------------------------------------------------------------
consensus_4237#0 GAGCTCAAGTATATCAAATGATTGTGAAGTGAAACAATTTATATTTGTAAACGGGAAAAA 960
consensus_4237#1 ------------------------------------------------------------
consensus_4237#0 ATATGGACAAAATCAAATTCTTCTTCCTCCTCCTCTGCACTGCTTAAAAAGAGTGAAAGC 1020
consensus_4237#1 ------------------------------------------------------------
consensus_4237#0 TTAACTTTACACTGCTCTGCGACCAGGTTACACATATAAATATTCTTTTTTTTCTCGAAC 1080
consensus_4237#1 ------------------------------------------------------------
consensus_4237#0 AGCATATACACACTCGCATGTATGTAACTTTAGTATCACAGATCAGAGGGTTACCACATA 1140
consensus_4237#1 ------------------------------------------------------------
consensus_4237#0 AACCAAAAAAGATATATTCATCTTTCAGTTTAACTAAAAACTTATAAAAAAACACTTCAG 1200
consensus_4237#1 ------------------------------------------------------------
consensus_4237#0 TATCAGGAAAGTGAGTATCTGACACAATTATCCTGATATCTGACAAACAAAAAACATTAG 1260
consensus_4237#1 ------------------------------------------------------------
consensus_4237#0 GTATGCAAAATCAAGTATCATAGGGATTGGGCATCAAGTCTGACTCTTTCATTTCACTAT 1320
consensus_4237#1 -----------------NGNNANCGATTGACTAT--GGCTCGGTCACAATCTTCCACGAC 41
* ***** ** * * ** *** *
consensus_4237#0 GAGTGTAATGGTATATATAGTCCTACCGTTTTACTCTTTTATTTTTCCTCTTGCTTTCTC 1380
consensus_4237#1 GCGCGCNCGCCCGAGCAC-GTCTTCCAGGACT--TCTGTCGCCGCTGCGCTGGCATCATC 98
* * * * *** * * * * *** * * * ** ** * **
consensus_4237#0 TGTGAACATAACAATAT-ATCAAGTTAACTTATAACTACTTTAC----TTATCTTTTTT- 1434
consensus_4237#1 AAGGCCCTCACCACCGTTGTTGTGCAGACGTGGGAAAGCTCTACAAGCTGAAGTTGTGCG 158
* * * ** * * * ** * * ** *** * * ** *
consensus_4237#0 -TCTAGGGAAATTCGTTCATTCACTGTAAGTATCAAGGGATAAAGATTGTGCATCCGCAC 1493
consensus_4237#1 ACCATGGGAAATTCGTTCATTCACTGTAAGTATCAAGGGATAAAGATTGTGCATNCGCAC 218
* ************************************************* *****
consensus_4237#0 AATGAGCTGTATCACGGATGCTGTAATGAAATGGTTCGATGGGAACATAGCATCAACCCT 1553
consensus_4237#1 AATGAGCTGTATCACGGATGCNGTAATGAAATGGTTCGATGGGA-CATAGCATCAACCCT 277
********************* ********************** ***************
consensus_4237#0 GAAATCTTTATCAATGCATACGATTGCTATGTCAATATGACGTGTTAGATTTATTTTGAT 1613
consensus_4237#1 GAAATCTTTATCAATGCATACGATTGCTATGTCAATATGACGTGTTAGATTTATTTTGAT 337
************************************************************
consensus_4237#0 CCCAAAATGGACGCCAGGATTGCTGAGATGGATCCAATGGATGATAATGAGGATGGTTTC 1673
consensus_4237#1 CCCAAAATGGACGCCAGGATTGCTGAGATGGATCCAATGGATGATAATGAGGATGGTTTC 397
************************************************************
consensus_4237#0 ACCGAGTTGGTATGGCAGGATATGTTGATAGACAACTTCTATGAAAACGATGTGATTCTT 1733
consensus_4237#1 ACCGAGTTGGTATGGCAGGATATGTTGATAGACAACTTCTATGAAAACGATGTGATTCTT 457
************************************************************
consensus_4237#0 CTTTGTGCCTGAATGTTCGTTTATGTATTTATATTTGTTGTCCTTTGTTATCAGCTTTTT 1793
consensus_4237#1 CTTTGTGCCTGAATGTTCGTTTATGTATTTAAAAA------------------------- 492
******************************* *
consensus_4237#0 AAAATGGAAG 1803
consensus_4237#1 ----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||