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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4238#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1611 fasta sequence
[AGAAACTTTCCTTTCTTTATAAACGGCTGAAGCAGCGGGAGGCCGAGGGGGCTCGCCCACACGCGCGGCCGGAGACCCCGGAATCCCAATCGGATCGCGAGGAAAGCCACTGAGAGAGTGTGGATGGCTCCCTCCTTGCTCGCCTCGGCGGCGAGCCAAATCCTCGCCGCTCCCCGCCGGGGAGGCCGCGGCCGGCGGCGTCTGGTCATCGCCTGCTCCGCCGGTGCCGGTGCTCCTCCCAAGCTGGTGACTTTCCTCGGGAAGGGCGGCTCCGGGAAGACCACCGCGGCCGCCGTCGCCGCTCAGTATTATGCAAGTGAAGGCTTGAAGACATGCTTGGTCATACAGTCCCAAGATCCCACCGCAGAGCAATTGATGGGTTGTAAGATCGGTAACTCGCTGACCGAGTGCGCTGCCAATCTTTCCACCATGAAGCTGGAGACTAGTAAAATGCTGCTTGAACCCCTTGACCGGCTAAAGAAAGTGGACTCGCAGATCAATCTTACTCAAGGAGTCCTTGAGGCGGTTGTAGGGGAGGAGCTTGGAGTCTTACCCGGAATGGACTCGGTCTGTTCAGTGTTAGCTCTTCAGAAGCTGCTTAACTTCTTTTCAACTCAAAGGAATAGTTCACAAGAGGAATTTGATGTGGTAGTGTATGATTGCAACAATACAGAGGAAATTCTACGGCTAATTGGTGCTACTGAGAGAGCAAGACAGGTCTTACTTGAGGTATGTGAAGGATCTAGCAGAAAAGACTGACATAGGAAGACTGGCTTCTCCTTCCGCGATGAGACTAATATACGATTCTGCAAGGCCAAATGGTAAAACTAGTGAAGGAAGACTGAGTTCAGAGTTATGGAATGATATTGAACAACTTATTCAGAGAATATCGGTTTGGTTTGCCGATCCCTCAAAATTTGCATGCTTCCTCATCATGGACCCTAGAAGATCAATCTCTGTATCTTCTGCATTGCGATACTGGGGATGTACAACTCAAGCTGGTGGAAATATATGTGGAGCATTTGGTTATACCGAACAGCGTTTCGAAATTCACCAAGGAGTTGCAGAGAAGTTTTTGCCGATGACTTTCTCGTTTCTGCCATTTCTGCCAACTGATTCTTCAGCAGATTGGAGCAGAGTGCTGAATTCTTTGAGCCAAAATGCAAAAGATTTACTGAGGAATACAAGCAACAAAGTATACCCTTCAGTTAGTTTTGATTCTGTTCAGAAATCGGTGACCCTTTTCATGCCGGGCTTTGATAAGTCTGAAATCAAACTATATCAATATAGAGGTGGATCAGAACTACTGATAGAAGCCGGCGACCAGAGGCGCGTCGTAAAGCTGCCGCCGGCGATGCAGGGCAAAGTTGGTGGCGCCAAGTTCGTCGACAGGAACCTCATTGTTACCATCCGGTAGCAGTGCGGACCAGCAGTTGTGTAAAATCTGTCAGAAGAGACCCAAACTGTTATAATAAATCGGTAAGTTAAGTCTTATTTAGACGTACTGGGTCTGATCGTATGGCAATATTCGTTATTTCTTTGTTGCAAAATGTGTAAAAAGAGCAAGATTTTTGCAGTGTCATTTACAGAAAACGGAATAAATCAGCACCA]
[+] EMBL AK106470 [AGAAACTTTCCTTTCTTTATAAACGGCTGAAGCAGCGGGAGGCCGAGGGGGCTCGCCCACACGCGCGGCCGGAGACCCCGGAATCCCAATCGGATCGCGAGGAAAGCCACTGAGAGAGTGTGGATGGCTCCCTCCTTGCTCGCCTCGGCGGCGAGCCAAATCCTCGCCGCTCCCCGCCGGGGAGGCCGCGGCCGGCGGCGTCTGGTCATCGCCTGCTCCGCCGGTGCCGGTGCTCCTCCCAAGCTGGTGACTTTCCTCGGGAAGGGCGGCTCCGGGAAGACCACCGCGGCCGCCGTCGCCGCTCAGTATTATGCAAGTGAAGGCTTGAAGACATGCTTGGTCATACAGTCCCAAGATCCCACCGCAGAGCAATTGATGGGTTGTAAGATCGGTAACTCGCTGACCGAGTGCGCTGCCAATCTTTCCACCATGAAGCTGGAGACTAGTAAAATGCTGCTTGAACCCCTTGACCGGCTAAAGAAAGTGGACTCGCAGATCAATCTTACTCAAGGAGTCCTTGAGGCGGTTGTAGGGGAGGAGCTTGGAGTCTTACCCGGAATGGACTCGGTCTGTTCAGTGTTAGCTCTTCAGAAGCTGCTTAACTTCTTTTCAACTCAAAGGAATAGTTCACAAGAGGAATTTGATGTGGTAGTGTATGATTGCAACAATACAGAGGAAATTCTACGGCTAATTGGTGCTACTGAGAGAGCAAGACAGGTCTTACTTGAGGTATGTGAAGGATCTAGCAGAAAAGACTGACATAGGAAGACTGGCTTCTCCTTCCGCGATGAGACTAATATACGATTCTGCAAGGCCAAATGGTAAAACTAGTGAAGGAAGACTGAGTTCAGAGTTATGGAATGATATTGAACAACTTATTCAGAGAATATCGGTTTGGTTTGCCGATCCCTCAAAATTTGCATGCTTCCTCATCATGGACCCTAGAAGATCAATCTCTGTATCTTCTGCATTGCGATACTGGGGATGTACAACTCAAGCTGGTGGAAATATATGTGGAGCATTTGGTTATACCGAACAGCGTTTCGAAATTCACCAAGGAGTTGCAGAGAAGTTTTTGCCGATGACTTTCTCGTTTCTGCCATTTCTGCCAACTGATTCTTCAGCAGATTGGAGCAGAGTGCTGAATTCTTTGAGCCAAAATGCAAAAGATTTACTGAGGAATACAAGCAACAAAGTATACCCTTCAGTTAGTTTTGATTCTGTTCAGAAATCGGTGACCCTTTTCATGCCGGGCTTTGATAAGTCTGAAATCAAACTATATCAATATAGAGGTGGATCAGAACTACTGATAGAAGCCGGCGACCAGAGGCGCGTCGTAAAGCTGCCGCCGGCGATGCAGGGCAAAGTTGGTGGCGCCAAGTTCGTCGACAGGAACCTCATTGTTACCATCCGGTAGCAGTGCGGACCAGCAGTTGTGTAAAATCTGTCAGAAGAGACCCAAACTGTTATAATAAATCGGTAAGTTAAGTCTTATTTAGACGTACTGGGTCTGATCGTATGGCAATATTCGTTATTTCTTTGTTGCAAAATGTGTAAAAAGAGCAAGATTTTTGCAGTGTCATTTACAGAAAACGGAATAAATCAGCACCA]
[+] EMBL CB682048 [ CAACTCATTCAGAGAATATCGGTTTGGTTTGCCGATCCCTCAAAATTTGCATGCTTCCTCATCATGGACCCTAGAAGATCAATCTCTGTATCTTCTGCATTGCGATACTGGGGATGTACAACTCAAGCTGGTGGAAATATATGTGGAGCATTTGGTTATACCGAACAGCGTTTCGAAATTCACCAAGGAGTTGCAGAGAAGTTTTTGCCGATGACTTTCTCGTTTCTGCCATTTCTGCCAACTGATTCTTCAGCAGATTGGAGCAGAGTGCTGAATTCTTTGAGCCAAAATGCAAAAGATTTACTGAGGAATACAAGCAACAAAGTATACCCTTCAGTTAGTTTTGATTCTGTTCAGAAATCGGTGACCCTTTTCATGCCGGGCTTTGATAAGTCTGAAATCAAACTATATCAATATAGAGGTGGATCAGAACTACTGATAGAAGCCGGCGACCAGAGGCGCGTCGTAAAGCTGCCGCCGGCGATGCAGGGCAAAGTTGGTGGCGCCAAGTTCGTCGACAGGAACCTCATTGTTACCATCCGGTAGCAGTGCGGACCAGCAGTTGTGTAAAATCTGTCAGAAGAGACCCAAACTGTTATAATAAATCGGTAAGTTAAGTCTTATTTAGACGTACTGGGTCTGATCGTATGGCAATATTCGTTATTTCTTTGTTGCAAAATGTGTAAAAAGAGCAAGATTTTTGCAGTGTCATTTACAGAAAACGGAATAAATCAGCACCA]
consensusID : consensus_4238#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 760 fasta sequence
[CGGCACGAGGGATATTGAACAACTTATTCAGAGAATATCGGTTTGGTTTGCCGATCCCTCAAAATTTGCATGCTTCCTCATCATGGACCCTAGAAGATCAATCTCTGTATCTTCTGCATTGCGATACTGGGGATGTACAACTCAAGCTGGTGGAAATATATGTGGAGCATTTGGTTATACCGAACAGCGTTTCGAAATTCACCAAGGAGTTGCAGAGAAGTTTTTGCCGATGACTTTCTCGTTTCTGCCATTTCTGCCAACTGATTCTTCAGCAGATTGGAGCAGAGTGCTGAATTCTTTGAGCCAAAATGCAAAAGATTTACTGAGGAATACAAGCAACAAAGTATACCCTTCAGTTAGTTTTGATTCTGTTCAGAAATCGGTGACCCTTTTCATGCCGGGCTTTGATAAGTCTGAAATCAAACTATATCAATATAGAGGTGGATCAGAACTACTGATAGAAGCCGGCGACCAGAGGCGCGTCGTAAAGCTGCCGCCGGCGATGCAGGGCAAAGTTGGTGGCGCCAAGTTCGTCGACAGGAACCTCATTGTTACCATCCGGTAGCAGTGCGGACCAGCAGTTGTGTAAAATCTGTCAGAAGAGACCCAAACTGTTATAATAAATCGGTAAGTTAAGTCTTATTTAGACGTACTGGGTCTGATCGTATGGCAATATTCGTTATTTCTTTGTTGCAAAATGTGTAAAAAGAGCAAGATTTTTGCAGTGTCATTTTCAGAAAGCGGAATAAATCAGCACCAA]
[-] EMBL CB682049 [CGGCACGAGGGATATTGAACAACTTATTCAGAGAATATCGGTTTGGTTTGCCGATCCCTCAAAATTTGCATGCTTCCTCATCATGGACCCTAGAAGATCAATCTCTGTATCTTCTGCATTGCGATACTGGGGATGTACAACTCAAGCTGGTGGAAATATATGTGGAGCATTTGGTTATACCGAACAGCGTTTCGAAATTCACCAAGGAGTTGCAGAGAAGTTTTTGCCGATGACTTTCTCGTTTCTGCCATTTCTGCCAACTGATTCTTCAGCAGATTGGAGCAGAGTGCTGAATTCTTTGAGCCAAAATGCAAAAGATTTACTGAGGAATACAAGCAACAAAGTATACCCTTCAGTTAGTTTTGATTCTGTTCAGAAATCGGTGACCCTTTTCATGCCGGGCTTTGATAAGTCTGAAATCAAACTATATCAATATAGAGGTGGATCAGAACTACTGATAGAAGCCGGCGACCAGAGGCGCGTCGTAAAGCTGCCGCCGGCGATGCAGGGCAAAGTTGGTGGCGCCAAGTTCGTCGACAGGAACCTCATTGTTACCATCCGGTAGCAGTGCGGACCAGCAGTTGTGTAAAATCTGTCAGAAGAGACCCAAACTGTTATAATAAATCGGTAAGTTAAGTCTTATTTAGACGTACTGGGTCTGATCGTATGGCAATATTCGTTATTTCTTTGTTGCAAAATGTGTAAAAAGAGCAAGATTTTTGCAGTGTCATTTTCAGAAAGCGGAATAAATCAGCACCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4238#0 AGAAACTTTCCTTTCTTTATAAACGGCTGAAGCAGCGGGAGGCCGAGGGGGCTCGCCCAC 60
consensus_4238#1 ------------------------------------------------------------
consensus_4238#0 ACGCGCGGCCGGAGACCCCGGAATCCCAATCGGATCGCGAGGAAAGCCACTGAGAGAGTG 120
consensus_4238#1 ------------------------------------------------------------
consensus_4238#0 TGGATGGCTCCCTCCTTGCTCGCCTCGGCGGCGAGCCAAATCCTCGCCGCTCCCCGCCGG 180
consensus_4238#1 ------------------------------------------------------------
consensus_4238#0 GGAGGCCGCGGCCGGCGGCGTCTGGTCATCGCCTGCTCCGCCGGTGCCGGTGCTCCTCCC 240
consensus_4238#1 ------------------------------------------------------------
consensus_4238#0 AAGCTGGTGACTTTCCTCGGGAAGGGCGGCTCCGGGAAGACCACCGCGGCCGCCGTCGCC 300
consensus_4238#1 ------------------------------------------------------------
consensus_4238#0 GCTCAGTATTATGCAAGTGAAGGCTTGAAGACATGCTTGGTCATACAGTCCCAAGATCCC 360
consensus_4238#1 ------------------------------------------------------------
consensus_4238#0 ACCGCAGAGCAATTGATGGGTTGTAAGATCGGTAACTCGCTGACCGAGTGCGCTGCCAAT 420
consensus_4238#1 ------------------------------------------------------------
consensus_4238#0 CTTTCCACCATGAAGCTGGAGACTAGTAAAATGCTGCTTGAACCCCTTGACCGGCTAAAG 480
consensus_4238#1 ------------------------------------------------------------
consensus_4238#0 AAAGTGGACTCGCAGATCAATCTTACTCAAGGAGTCCTTGAGGCGGTTGTAGGGGAGGAG 540
consensus_4238#1 ------------------------------------------------------------
consensus_4238#0 CTTGGAGTCTTACCCGGAATGGACTCGGTCTGTTCAGTGTTAGCTCTTCAGAAGCTGCTT 600
consensus_4238#1 ------------------------------------------------------------
consensus_4238#0 AACTTCTTTTCAACTCAAAGGAATAGTTCACAAGAGGAATTTGATGTGGTAGTGTATGAT 660
consensus_4238#1 ------------------------------------------------------------
consensus_4238#0 TGCAACAATACAGAGGAAATTCTACGGCTAATTGGTGCTACTGAGAGAGCAAGACAGGTC 720
consensus_4238#1 ------------------------------------------------------------
consensus_4238#0 TTACTTGAGGTATGTGAAGGATCTAGCAGAAAAGACTGACATAGGAAGACTGGCTTCTCC 780
consensus_4238#1 ------------------------------------------------------------
consensus_4238#0 TTCCGCGATGAGACTAATATACGATTCTGCAAGGCCAAATGGTAAAACTAGTGAAGGAAG 840
consensus_4238#1 ------------------------------------------------------------
consensus_4238#0 ACTGAGTTCAGAGTTATGGAATGATATTGAACAACTTATTCAGAGAATATCGGTTTGGTT 900
consensus_4238#1 -----------CGGCACGAGG-GATATTGAACAACTTATTCAGAGAATATCGGTTTGGTT 48
* * * **************************************
consensus_4238#0 TGCCGATCCCTCAAAATTTGCATGCTTCCTCATCATGGACCCTAGAAGATCAATCTCTGT 960
consensus_4238#1 TGCCGATCCCTCAAAATTTGCATGCTTCCTCATCATGGACCCTAGAAGATCAATCTCTGT 108
************************************************************
consensus_4238#0 ATCTTCTGCATTGCGATACTGGGGATGTACAACTCAAGCTGGTGGAAATATATGTGGAGC 1020
consensus_4238#1 ATCTTCTGCATTGCGATACTGGGGATGTACAACTCAAGCTGGTGGAAATATATGTGGAGC 168
************************************************************
consensus_4238#0 ATTTGGTTATACCGAACAGCGTTTCGAAATTCACCAAGGAGTTGCAGAGAAGTTTTTGCC 1080
consensus_4238#1 ATTTGGTTATACCGAACAGCGTTTCGAAATTCACCAAGGAGTTGCAGAGAAGTTTTTGCC 228
************************************************************
consensus_4238#0 GATGACTTTCTCGTTTCTGCCATTTCTGCCAACTGATTCTTCAGCAGATTGGAGCAGAGT 1140
consensus_4238#1 GATGACTTTCTCGTTTCTGCCATTTCTGCCAACTGATTCTTCAGCAGATTGGAGCAGAGT 288
************************************************************
consensus_4238#0 GCTGAATTCTTTGAGCCAAAATGCAAAAGATTTACTGAGGAATACAAGCAACAAAGTATA 1200
consensus_4238#1 GCTGAATTCTTTGAGCCAAAATGCAAAAGATTTACTGAGGAATACAAGCAACAAAGTATA 348
************************************************************
consensus_4238#0 CCCTTCAGTTAGTTTTGATTCTGTTCAGAAATCGGTGACCCTTTTCATGCCGGGCTTTGA 1260
consensus_4238#1 CCCTTCAGTTAGTTTTGATTCTGTTCAGAAATCGGTGACCCTTTTCATGCCGGGCTTTGA 408
************************************************************
consensus_4238#0 TAAGTCTGAAATCAAACTATATCAATATAGAGGTGGATCAGAACTACTGATAGAAGCCGG 1320
consensus_4238#1 TAAGTCTGAAATCAAACTATATCAATATAGAGGTGGATCAGAACTACTGATAGAAGCCGG 468
************************************************************
consensus_4238#0 CGACCAGAGGCGCGTCGTAAAGCTGCCGCCGGCGATGCAGGGCAAAGTTGGTGGCGCCAA 1380
consensus_4238#1 CGACCAGAGGCGCGTCGTAAAGCTGCCGCCGGCGATGCAGGGCAAAGTTGGTGGCGCCAA 528
************************************************************
consensus_4238#0 GTTCGTCGACAGGAACCTCATTGTTACCATCCGGTAGCAGTGCGGACCAGCAGTTGTGTA 1440
consensus_4238#1 GTTCGTCGACAGGAACCTCATTGTTACCATCCGGTAGCAGTGCGGACCAGCAGTTGTGTA 588
************************************************************
consensus_4238#0 AAATCTGTCAGAAGAGACCCAAACTGTTATAATAAATCGGTAAGTTAAGTCTTATTTAGA 1500
consensus_4238#1 AAATCTGTCAGAAGAGACCCAAACTGTTATAATAAATCGGTAAGTTAAGTCTTATTTAGA 648
************************************************************
consensus_4238#0 CGTACTGGGTCTGATCGTATGGCAATATTCGTTATTTCTTTGTTGCAAAATGTGTAAAAA 1560
consensus_4238#1 CGTACTGGGTCTGATCGTATGGCAATATTCGTTATTTCTTTGTTGCAAAATGTGTAAAAA 708
************************************************************
consensus_4238#0 GAGCAAGATTTTTGCAGTGTCATTTACAGAAAACGGAATAAATCAGCACCA- 1611
consensus_4238#1 GAGCAAGATTTTTGCAGTGTCATTTTCAGAAAGCGGAATAAATCAGCACCAA 760
************************* ****** ******************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||