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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_425#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1356 fasta sequence
[GGCGGCGGCGGCCTCTCCACCGGCCGGAAGATGGTCCCGTCGTCGAGCTGGGCCGAGCGGCGCGGCTCGTGCGCGACGGCCTCTTCTTCTCCCCCTGCCCCATCGCCGCTCTTCACAGGATCGCGGCGTGGCGGAGCAGGGGCGCCCTCCCGGTCGCCGTAGATGTGGCCGCGGCGTTCGTCGAGATACGGCTGCGGGAATCGGAATCCCTTCTTCTTCCCGGAATGTGATGGCTGTGGATGATCCGCTGGAGTCTGAAGAGATGTCGGCGATGCTGTGTAGTATGGCAATCATGAGGTGAATCCAATGCTTGAATGCCAGCAAAAATGGAAATTTATATTCCCTTGTTCTGTGGCTTGTGACAAATATAAAAGAAATAAAGGATTCAGGCTGCATTGGACTTGTTCACGAGATAGGAGTGCTCTCTTCAGACAGAAATGTAGTCCAATGTTCCTGTCCAGCAAAACTTCTGCAGAAGTTGAGTTTGTCCACTATAGGTGAAAGATGTCTCATAGATGCAGCACTACTGCTGTTTGAGATGGCCAGCAATAATGTGAAAGAGAAACTGAGGAAGCTTCTTATGTTATCCCTGGGAAAGTTGGCTAGAATTTCTATCCTCACGGAGTCCTCCAAAGAAATAGAATCAGCTGACAGGGCAACAGAGAAGCTGGAAATGTTCAAGTCACAGTTGAAACAGAAGGATGTATGTTTGGCAGAAAATGGCAACGGGGGATCATTGAACACAATCTTGTTGGAGAAACGTAGCAGATGGTCTATAACAAAGTCTTGGACCCCCTGTGCGATAGGAATGGTACCATGCTCATTTAGTTCAACGGCTGTTCTTCCGACACTTGATGTCATCGATCATGAATTGAAAGATGACACATTGGAGCAACATGTAAATTTTGAGCTTGATGACCATACTGAAAGGGCTGGCTATCATTCTCATCCTGAGAAGCAATTGGATGTTGAATGCATTCCGGCAATATCTGAACGTGAGATTTCAGATATGTCAGAAGTGACCTTTCCTCTGAAAGTCTGAAGGGTAAGTTACTGGTTGGTGGCGTGTGGAAGGTGATGAGTGAAGGGAGCTACTCTTGATTAAGTCAAAGATGAAAATTTTGTTGTAACAGTAGCTAGTTAAGTTGTGTCATGTGTCCTCTTAAACCAGCAATTTCAGGCTGTTACGAACGGCGGATAGTTCTATCTTAAAGCTGGAAAAAAAGAGAGGGAAATATATGACCAGTACTTAAACTTGGACTAGGGTGTCATTTAGGTCTATGAACTTATAATGCACATCCATTTCCTATTTTGGTTTAATATATAATCTGAGGTTCAAAGTACAAGTGACTCAGG]
[+] EMBL AK065492 [GGCGGCGGCGGCCTCTCCACCGGCCGGAAGATGGTCCCGTCGTCGAGCTGGGCCGAGCGGCGCGGCTCGTGCGCGACGGCCTCTTCTTCTCCCCCTGCCCCATCGCCGCTCTTCACAGGATCGCGGCGTGGCGGAGCAGGGGCGCCCTCCCGGTCGCCGTAGATGTGGCCGCGGCGTTCGTCGAGATACGGCTGCGGGAATCGGAATCCCTTCTTCTTCCCGGAATGTGATGGCTGTGGATGATCCGCTGGAGTCTGAAGAGATGTCGGCGATGCTGTGTAGTATGGCAATCATGAGGTGAATCCAATGCTTGAATGCCAGCAAAAATGGAAATTTATATTCCCTTGTTCTGTGGCTTGTGACAAATATAAAAGAAATAAAGGATTCAGGCTGCATTGGACTTGTTCACGAGATAGGAGTGCTCTCTTCAGACAGAAATGTAGTCCAATGTTCCTGTCCAGCAAAACTTCTGCAGAAGTTGAGTTTGTCCACTATAGGTGAAAGATGTCTCATAGATGCAGCACTACTGCTGTTTGAGATGGCCAGCAATAATGTGAAAGAGAAACTGAGGAAGCTTCTTATGTTATCCCTGGGAAAGTTGGCTAGAATTTCTATCCTCACGGAGTCCTCCAAAGAAATAGAATCAGCTGACAGGGCAACAGAGAAGCTGGAAATGTTCAAGTCACAGTTGAAACAGAAGGATGTATGTTTGGCAGAAAATGGCAACGGGGGATCATTGAACACAATCTTGTTGGAGAAACGTAGCAGATGGTCTATAACAAAGTCTTGGACCCCCTGTGCGATAGGAATGGTACCATGCTCATTTAGTTCAACGGCTGTTCTTCCGACACTTGATGTCATCGATCATGAATTGAAAGATGACACATTGGAGCAACATGTAAATTTTGAGCTTGATGACCATACTGAAAGGGCTGGCTATCATTCTCATCCTGAGAAGCAATTGGATGTTGAATGCATTCCGGCAATATCTGAACGTGAGATTTCAGATATGTCAGAAGTGACCTTTCCTCTGAAAGTCTGAAGGGTAAGTTACTGGTTGGTGGCGTGTGGAAGGTGATGAGTGAAGGGAGCTACTCTTGATTAAGTCAAAGATGAAAATTTTGTTGTAACAGTAGCTAGTTAAGTTGTGTCATGTGTCCTCTTAAACCAGCAATTTCAGGCTGTTACGAACGGCGGATAGTTCTATCTTAAAGCTGGAAAAAAAGAGAGGGAAATATATGACCAGTACTTAAACTTGGACTAGGGTGTCATTTAGGTCTATGAACTTATAATGCACATCCATTTCCTATTTTGGTTTAATATATAATCTGAGGTTCAAAGTACAAGTGACTCAGG]
consensusID : consensus_425#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence
[AACAGAGAAAGCTGGAAATGTTCAAGTCACAGTTGAAACAGAAGGATGTATGTTTGGCAGAAAATGGCAACGGGGGATCATTGAACACAATCTTGTTGGAGAAACGTAGCAGATGGTCTATAACAAAGTCTTGGACCCCTGTGCGATAGGAATGGTACCATGCTCATTTAGTTCAACGGCTGTTCTTCCGACACTTGATGTCATCGATCATGAATTGAAAGATGACACATTGGAGCAACATGTAAATTTTGAGCTTGATGACCATACTGAAAGGGCTGGCTATCATTCTCATCCTGAGAAGCAATTGGATGTTGAATGCATTCCGGCAATATCTGAACGTGAGATTTCAGATATGTCAGAAGTGACCTTTCCTCTGAAAGTCTGAAGGGTAAGTTACTGGTTGGTGGCGTGTGGAAGGTGATGAGTGAAGGGAGCTACTCTTGATTAAGTCAAAGATGAAAAATTTGTAACAGTAGCTAGTTAAGTTGTGTCATGTGTCCTCTTAAACCAGCAATTTCAGGCTGTTACGAACGGCGGATAGTTCTATCTTAAAGCTGGAAAAAAAGAGAGGGAAATATATGACCAGTACTTAAACTTGGACTAGGGTGTCATTTAGGTCTATGAACTTATAATGCACATCCATTTCCTATTTTGGTTTAATATATAATCTGAGGTTCAAAGTAAAAAAAAAAAAAA]
[-] EMBL CA760074 [AACAGAGAAAGCTGGAAATGTTCAAGTCACAGTTGAAACAGAAGGATGTATGTTTGGCAGAAAATGGCAACGGGGGATCATTGAACACAATCTTGTTGGAGAAACGTAGCAGATGGTCTATAACAAAGTCTTGGACCCCTGTGCGATAGGAATGGTACCATGCTCATTTAGTTCAACGGCTGTTCTTCCGACACTTGATGTCATCGATCATGAATTGAAAGATGACACATTGGAGCAACATGTAAATTTTGAGCTTGATGACCATACTGAAAGGGCTGGCTATCATTCTCATCCTGAGAAGCAATTGGATGTTGAATGCATTCCGGCAATATCTGAACGTGAGATTTCAGATATGTCAGAAGTGACCTTTCCTCTGAAAGTCTGAAGGGTAAGTTACTGGTTGGTGGCGTGTGGAAGGTGATGAGTGAAGGGAGCTACTCTTGATTAAGTCAAAGATGAAAAATTTGTAACAGTAGCTAGTTAAGTTGTGTCATGTGTCCTCTTAAACCAGCAATTTCAGGCTGTTACGAACGGCGGATAGTTCTATCTTAAAGCTGGAAAAAAAGAGAGGGAAATATATGACCAGTACTTAAACTTGGACTAGGGTGTCATTTAGGTCTATGAACTTATAATGCACATCCATTTCCTATTTTGGTTTAATATATAATCTGAGGTTCAAAGTAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_425#0 GGCGGCGGCGGCCTCTCCACCGGCCGGAAGATGGTCCCGTCGTCGAGCTGGGCCGAGCGG 60
consensus_425#1 ------------------------------------------------------------
consensus_425#0 CGCGGCTCGTGCGCGACGGCCTCTTCTTCTCCCCCTGCCCCATCGCCGCTCTTCACAGGA 120
consensus_425#1 ------------------------------------------------------------
consensus_425#0 TCGCGGCGTGGCGGAGCAGGGGCGCCCTCCCGGTCGCCGTAGATGTGGCCGCGGCGTTCG 180
consensus_425#1 ------------------------------------------------------------
consensus_425#0 TCGAGATACGGCTGCGGGAATCGGAATCCCTTCTTCTTCCCGGAATGTGATGGCTGTGGA 240
consensus_425#1 ------------------------------------------------------------
consensus_425#0 TGATCCGCTGGAGTCTGAAGAGATGTCGGCGATGCTGTGTAGTATGGCAATCATGAGGTG 300
consensus_425#1 ------------------------------------------------------------
consensus_425#0 AATCCAATGCTTGAATGCCAGCAAAAATGGAAATTTATATTCCCTTGTTCTGTGGCTTGT 360
consensus_425#1 ------------------------------------------------------------
consensus_425#0 GACAAATATAAAAGAAATAAAGGATTCAGGCTGCATTGGACTTGTTCACGAGATAGGAGT 420
consensus_425#1 ------------------------------------------------------------
consensus_425#0 GCTCTCTTCAGACAGAAATGTAGTCCAATGTTCCTGTCCAGCAAAACTTCTGCAGAAGTT 480
consensus_425#1 ------------------------------------------------------------
consensus_425#0 GAGTTTGTCCACTATAGGTGAAAGATGTCTCATAGATGCAGCACTACTGCTGTTTGAGAT 540
consensus_425#1 ------------------------------------------------------------
consensus_425#0 GGCCAGCAATAATGTGAAAGAGAAACTGAGGAAGCTTCTTATGTTATCCCTGGGAAAGTT 600
consensus_425#1 ------------------------------------------------------------
consensus_425#0 GGCTAGAATTTCTATCCTCACGGAGTCCTCCAAAGAAATAGAATCAGCTGACAGGGCAAC 660
consensus_425#1 ---------------------------------------------------------AAC 3
***
consensus_425#0 AGAGAA-GCTGGAAATGTTCAAGTCACAGTTGAAACAGAAGGATGTATGTTTGGCAGAAA 719
consensus_425#1 AGAGAAAGCTGGAAATGTTCAAGTCACAGTTGAAACAGAAGGATGTATGTTTGGCAGAAA 63
****** *****************************************************
consensus_425#0 ATGGCAACGGGGGATCATTGAACACAATCTTGTTGGAGAAACGTAGCAGATGGTCTATAA 779
consensus_425#1 ATGGCAACGGGGGATCATTGAACACAATCTTGTTGGAGAAACGTAGCAGATGGTCTATAA 123
************************************************************
consensus_425#0 CAAAGTCTTGGACCCCCTGTGCGATAGGAATGGTACCATGCTCATTTAGTTCAACGGCTG 839
consensus_425#1 CAAAGTCTTGGACCCC-TGTGCGATAGGAATGGTACCATGCTCATTTAGTTCAACGGCTG 182
**************** *******************************************
consensus_425#0 TTCTTCCGACACTTGATGTCATCGATCATGAATTGAAAGATGACACATTGGAGCAACATG 899
consensus_425#1 TTCTTCCGACACTTGATGTCATCGATCATGAATTGAAAGATGACACATTGGAGCAACATG 242
************************************************************
consensus_425#0 TAAATTTTGAGCTTGATGACCATACTGAAAGGGCTGGCTATCATTCTCATCCTGAGAAGC 959
consensus_425#1 TAAATTTTGAGCTTGATGACCATACTGAAAGGGCTGGCTATCATTCTCATCCTGAGAAGC 302
************************************************************
consensus_425#0 AATTGGATGTTGAATGCATTCCGGCAATATCTGAACGTGAGATTTCAGATATGTCAGAAG 1019
consensus_425#1 AATTGGATGTTGAATGCATTCCGGCAATATCTGAACGTGAGATTTCAGATATGTCAGAAG 362
************************************************************
consensus_425#0 TGACCTTTCCTCTGAAAGTCTGAAGGGTAAGTTACTGGTTGGTGGCGTGTGGAAGGTGAT 1079
consensus_425#1 TGACCTTTCCTCTGAAAGTCTGAAGGGTAAGTTACTGGTTGGTGGCGTGTGGAAGGTGAT 422
************************************************************
consensus_425#0 GAGTGAAGGGAGCTACTCTTGATTAAGTCAAAGATGAAAATTTTGTTGTAACAGTAGCTA 1139
consensus_425#1 GAGTGAAGGGAGCTACTCTTGATTAAGTCAAAGATGAAAAATTTG---TAACAGTAGCTA 479
**************************************** **** ************
consensus_425#0 GTTAAGTTGTGTCATGTGTCCTCTTAAACCAGCAATTTCAGGCTGTTACGAACGGCGGAT 1199
consensus_425#1 GTTAAGTTGTGTCATGTGTCCTCTTAAACCAGCAATTTCAGGCTGTTACGAACGGCGGAT 539
************************************************************
consensus_425#0 AGTTCTATCTTAAAGCTGGAAAAAAAGAGAGGGAAATATATGACCAGTACTTAAACTTGG 1259
consensus_425#1 AGTTCTATCTTAAAGCTGGAAAAAAAGAGAGGGAAATATATGACCAGTACTTAAACTTGG 599
************************************************************
consensus_425#0 ACTAGGGTGTCATTTAGGTCTATGAACTTATAATGCACATCCATTTCCTATTTTGGTTTA 1319
consensus_425#1 ACTAGGGTGTCATTTAGGTCTATGAACTTATAATGCACATCCATTTCCTATTTTGGTTTA 659
************************************************************
consensus_425#0 ATATATAATCTGAGGTTCAAAGTACAAGTGACTCAGG 1356
consensus_425#1 ATATATAATCTGAGGTTCAAAGTAAAAAAAAAAAAAA 696
************************ ** * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||