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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4252#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1733 fasta sequence
[CGCGGCCTCCTCCTCCTCCACCACCGCCGCGCCGTCGCGTTCGCCTTTTTTCCTCCTTCCCGGACCTCGTGCGCTCCCACCACCACCACCCCGCGGCTTCGCTCGCGCCACCGCCACTGATTCGCCGGAGAGTTGCTGTTCCCTTCGTGATTTCGTCGGCGGTGGCGGCGGCGGGGGTGGTCTCCTGTTGCTGTACAGACCAGCATCGTTGGGGGGAATCGGATGAGATGAGATGAGATGAGATGCGGGGGTGGTGGTGATGGAGGCGCTCTCCCGGACCGAGCGTGTAGGAGGAGGAGGTGGAGCCATGGTTGAAGTGGCCTTCGCTTCGTCCGCCGGATCCTCCGCCGCGGCCCCGCGCCGCCTTCGTGGGGAGCTCGTCGTCAGGGACGCTATTCCGTATGCCGGGGTGGCTCCTCCGCCGCCCGCGCTGCCGCTGCCGCAGCCGCAGCTGCAGCCGCAGGTGCAGGCTACGACGAGTGGGGGCGGCGGCGGGGGGAAGATTAGCCCCGCGGTGCTGTTCATCATCGTGATTCTCGCGGTGGTGTTCTTCATCTCCGGCTTGCTCCACCTCCTGGTGCGGCTACTCATGAAGAAGCAGCATCGCCGCGGAGGAGGAGGGGGTGCGGCGGCCGGGGTGTCGCGGTCGGCCGCCGGGGATGACGCGGGGGGAGGAGGGGACGCGGCGCTGCAGCGGCAGCTGCAGCAGCTGTTCCACCTTCACGACTCCGGGCTGGACCAGGCGTTCATCGACGCGCTGCCGGTGTTCGCCTACCGGGAGATCGTCGTGGGCGGCGGCGGCGACGGCGACAAGGAGCCCTTCGACTGCGCGGTGTGCCTGTGCGAGTTCGACGCCGAGGACCGCCTCCGGCTGCTGCCGCTGTGCGGGCACGCCTTCCACCTGCATTGCATCGACACATGGCTGCTGTCCAACTCCACCTGCCCGCTCTGTCGCGGGGTGCTCTTTGTCCCTGGGCTCACGGAGAACAATCCGATGTTTGATTTCGATGAGGGGTTGGAAGAAGGGAGGCTGTCTGAAGATTGCGATAACGGATTCGGATATCCCGGGCACAAGGCTACGGAGGGGATGCAGACGCCAGGGACTGAGAAGAGGGTGTTCCCTGTGAGGCTTGGGAAGTTCAAGAATGTCGGGACCCAGGGCGCTGTCGAAGGCGGTGGCATCGGCAATGCCAATGGTGCTGTCTTGAGGAGAGAGGAAGGGGAGAGCAGCAGCAGCAGCTTGGATGCAAGGAGATGCTTCTCAATGGGGACTTACCAGTATGTTCTAGGGACCTCAGAGCTCAGGGTGTCTCTCCAGCCAGACCGAATTAGAAATGGCGGCGGCGGTGTGACGAGGGCAAGGCCGACAGGGTTAAGCTCTGTCAATGCTGAGATCATGGAGGGGAAGAAGATATGCGCACGGAACAAAGGGGAGAGCTTCTCTGTGTCGAAGATTTGGCAGTGGTCTAATCTGAAGGGCAAGCTACCTACTGGCTCAGATGAATGTTCGGAAGCAGGGAGCCTTCCATGGATGAAGAGAGGTGGCATTGGGGATACATCAAATATGTGACTGTAGTCTGTATTATGATAGTGGCTAATCTTTTCTCTTGTTGGTGCTGCTCACTTAATCTCTTACCTATAGTTATCTTGACTTTTTTCAGTCTGATTGCTTAGTGCTGAGTTTGATTGAAGGGCATTAATCCCATGGAGCGATAATTTCTCAAAAAAAAAGG]
[+] EMBL AK108060 [CGCGGCCTCCTCCTCCTCCACCACCGCCGCGCCGTCGCGTTCGCCTTTTTTCCTCCTTCCCGGACCTCGTGCGCTCCCACCACCACCACCCCGCGGCTTCGCTCGCGCCACCGCCACTGATTCGCCGGAGAGTTGCTGTTCCCTTCGTGATTTCGTCGGCGGTGGCGGCGGCGGGGGTGGTCTCCTGTTGCTGTACAGACCAGCATCGTTGGGGGGAATCGGATGAGATGAGATGAGATGAGATGCGGGGGTGGTGGTGATGGAGGCGCTCTCCCGGACCGAGCGTGTAGGAGGAGGAGGTGGAGCCATGGTTGAAGTGGCCTTCGCTTCGTCCGCCGGATCCTCCGCCGCGGCCCCGCGCCGCCTTCGTGGGGAGCTCGTCGTCAGGGACGCTATTCCGTATGCCGGGGTGGCTCCTCCGCCGCCCGCGCTGCCGCTGCCGCAGCCGCAGCTGCAGCCGCAGGTGCAGGCTACGACGAGTGGGGGCGGCGGCGGGGGGAAGATTAGCCCCGCGGTGCTGTTCATCATCGTGATTCTCGCGGTGGTGTTCTTCATCTCCGGCTTGCTCCACCTCCTGGTGCGGCTACTCATGAAGAAGCAGCATCGCCGCGGAGGAGGAGGGGGTGCGGCGGCCGGGGTGTCGCGGTCGGCCGCCGGGGATGACGCGGGGGGAGGAGGGGACGCGGCGCTGCAGCGGCAGCTGCAGCAGCTGTTCCACCTTCACGACTCCGGGCTGGACCAGGCGTTCATCGACGCGCTGCCGGTGTTCGCCTACCGGGAGATCGTCGTGGGCGGCGGCGGCGACGGCGACAAGGAGCCCTTCGACTGCGCGGTGTGCCTGTGCGAGTTCGACGCCGAGGACCGCCTCCGGCTGCTGCCGCTGTGCGGGCACGCCTTCCACCTGCATTGCATCGACACATGGCTGCTGTCCAACTCCACCTGCCCGCTCTGTCGCGGGGTGCTCTTTGTCCCTGGGCTCACGGAGAACAATCCGATGTTTGATTTCGATGAGGGGTTGGAAGAAGGGAGGCTGTCTGAAGATTGCGATAACGGATTCGGATATCCCGGGCACAAGGCTACGGAGGGGATGCAGACGCCAGGGACTGAGAAGAGGGTGTTCCCTGTGAGGCTTGGGAAGTTCAAGAATGTCGGGACCCAGGGCGCTGTCGAAGGCGGTGGCATCGGCAATGCCAATGGTGCTGTCTTGAGGAGAGAGGAAGGGGAGAGCAGCAGCAGCAGCTTGGATGCAAGGAGATGCTTCTCAATGGGGACTTACCAGTATGTTCTAGGGACCTCAGAGCTCAGGGTGTCTCTCCAGCCAGACCGAATTAGAAATGGCGGCGGCGGTGTGACGAGGGCAAGGCCGACAGGGTTAAGCTCTGTCAATGCTGAGATCATGGAGGGGAAGAAGATATGCGCACGGAACAAAGGGGAGAGCTTCTCTGTGTCGAAGATTTGGCAGTGGTCTAATCTGAAGGGCAAGCTACCTACTGGCTCAGATGAATGTTCGGAAGCAGGGAGCCTTCCATGGATGAAGAGAGGTGGCATTGGGGATACATCAAATATGTGACTGTAGTCTGTATTATGATAGTGGCTAATCTTTTCTCTTGTTGGTGCTGCTCACTTAATCTCTTACCTATAGTTATCTT ]
[-] EMBL CB682411 [ CGACACATGGCTGCTGTCCAACTCCACCTGCCCGCTCTGTCGCGGGGTGCTCTTTGTCCCTGGGCTCACGGAGAACAATCCGATGTTTGATTTCGATGAGGGGTTGGAAGAAGGGAGGCTGTCTGAAGATTGCGATAACGGATTCGGATATCCCGGGCACAAGGCTACGGAGGGGATGCAGACGCCAGGGACTGAGAAGAGGGTGTTCCCTGTGAGGCTTGGGAAGTTCAAGAATGTCGGGACCCAGGGCGCTGTCGAAGGCGGTGGCATCGGCAATGCCAATGGTGCTGTCTTGAGGAGAGAGGAAGGGGAGAGCAGCAGCAGCAGCTTGGATGCAAGGAGATGCTTCTCAATGGGGACTTACCAGTATGTTCTAGGGACCTCAGAGCTCAGGGTGTCTCTCCAGCCAGACCGAATTAGAAATGGCGGCGGCGGTGTGACGAGGGCAAGGCCGACAGGGTTAAGCTCTGTCAATGCTGAGATCATGGAGGGGAAGAAGATATGCGCACGGAACAAAGGGGAGAGCTTCTCTGTGTCGAAGATTTGGCAGTGGTCTAATCTGAAGGGCAAGCTACCTACTGGCTCAGATGAATGTTCGGAAGCAGGGAGCCTTCCATGGATGAAGAGAGGTGGCATTGGGGATACATCAAATATGTGACTGTAGTCTGTATTATGATAGTGGCTAATCTTTTCTCTTGTTGGTGCTGCTCACTTAATCTCTTACCTATAGTTATCTTGACTTTTTTCAGTCTGATTGCTTAGTGCTGAGTTTGATTGAAGGGCATTAATCCCATGGAGCGATAATTTCTCAAAAAAAAAGG]
consensusID : consensus_4252#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 701 fasta sequence
[CCGCCGCGCCGTCGCGTTCGCCTTTTTTCCTCCTTCCCGGACCTCGTGCGCTCCCACCACCACCACCCCGCGGCTTCGCTCGCGCCACCGCCACTGATTCGCCGGAGAGTTGCTGTTCCCTTCGTGATTTCGTCGGCGGTGGCGGCGGCGGGGGTGGTCTCCTGTTGCTGTACAGACCAGCATCGTTGGGGGGAATCGGATGAGATGAGATGAGATGAGATGCGGGGGTGGTGGTGATGGAGGCGCTCTCCCGGACCGAGCGTGTAGGAGGAGGAGGTGGAGCCATGGTTGAAGTGGCCTTCGCTTCGTCCGCCGGATCCTCCGCCGCGGCCCCGCGCCGCCTTCGTGGGGAGCTCGTCGTCAGGGACGCTATTCCGTATGCCGGGGTGGCTCCTCCGCCGCCCGCGCTGCCGCTGCCGCAGCCGCAGCTGCAGCCGCAGGTGCAGGCTACGACGAGTGGGGGCGGCGGCGGGGGGAAGATTAGCCCCGCGGTGCTGTTCATCATCGTGATTCTCGCGGTGGTGTTCTTCATCTCCGGCTTGCTCCACCTCCTGGTGCGGCTACTCATGAAGAAGCAGCATCCCCGCCGAGGAGGAGGGGGTGCGCATCCCCTCCGTAGCCTTGTGCCCGGGATATCCGAATCCGTTATCGCAATCTTCAGACAGCCTCCCTTCTTCCAACCCCTCATCGAAATCAAACAT]
[+] EMBL CB682410 [CCGCCGCGCCGTCGCGTTCGCCTTTTTTCCTCCTTCCCGGACCTCGTGCGCTCCCACCACCACCACCCCGCGGCTTCGCTCGCGCCACCGCCACTGATTCGCCGGAGAGTTGCTGTTCCCTTCGTGATTTCGTCGGCGGTGGCGGCGGCGGGGGTGGTCTCCTGTTGCTGTACAGACCAGCATCGTTGGGGGGAATCGGATGAGATGAGATGAGATGAGATGCGGGGGTGGTGGTGATGGAGGCGCTCTCCCGGACCGAGCGTGTAGGAGGAGGAGGTGGAGCCATGGTTGAAGTGGCCTTCGCTTCGTCCGCCGGATCCTCCGCCGCGGCCCCGCGCCGCCTTCGTGGGGAGCTCGTCGTCAGGGACGCTATTCCGTATGCCGGGGTGGCTCCTCCGCCGCCCGCGCTGCCGCTGCCGCAGCCGCAGCTGCAGCCGCAGGTGCAGGCTACGACGAGTGGGGGCGGCGGCGGGGGGAAGATTAGCCCCGCGGTGCTGTTCATCATCGTGATTCTCGCGGTGGTGTTCTTCATCTCCGGCTTGCTCCACCTCCTGGTGCGGCTACTCATGAAGAAGCAGCATCCCCGCCGAGGAGGAGGGGGTGCGCATCCCCTCCGTAGCCTTGTGCCCGGGATATCCGAATCCGTTATCGCAATCTTCAGACAGCCTCCCTTCTTCCAACCCCTCATCGAAATCAAACAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4252#0 CGCGGCCTCCTCCTCCTCCACCACCGCCGCGCCGTCGCGTTCGCCTTTTTTCCTCCTTCC 60
consensus_4252#1 -----------------------CCGCCGCGCCGTCGCGTTCGCCTTTTTTCCTCCTTCC 37
*************************************
consensus_4252#0 CGGACCTCGTGCGCTCCCACCACCACCACCCCGCGGCTTCGCTCGCGCCACCGCCACTGA 120
consensus_4252#1 CGGACCTCGTGCGCTCCCACCACCACCACCCCGCGGCTTCGCTCGCGCCACCGCCACTGA 97
************************************************************
consensus_4252#0 TTCGCCGGAGAGTTGCTGTTCCCTTCGTGATTTCGTCGGCGGTGGCGGCGGCGGGGGTGG 180
consensus_4252#1 TTCGCCGGAGAGTTGCTGTTCCCTTCGTGATTTCGTCGGCGGTGGCGGCGGCGGGGGTGG 157
************************************************************
consensus_4252#0 TCTCCTGTTGCTGTACAGACCAGCATCGTTGGGGGGAATCGGATGAGATGAGATGAGATG 240
consensus_4252#1 TCTCCTGTTGCTGTACAGACCAGCATCGTTGGGGGGAATCGGATGAGATGAGATGAGATG 217
************************************************************
consensus_4252#0 AGATGCGGGGGTGGTGGTGATGGAGGCGCTCTCCCGGACCGAGCGTGTAGGAGGAGGAGG 300
consensus_4252#1 AGATGCGGGGGTGGTGGTGATGGAGGCGCTCTCCCGGACCGAGCGTGTAGGAGGAGGAGG 277
************************************************************
consensus_4252#0 TGGAGCCATGGTTGAAGTGGCCTTCGCTTCGTCCGCCGGATCCTCCGCCGCGGCCCCGCG 360
consensus_4252#1 TGGAGCCATGGTTGAAGTGGCCTTCGCTTCGTCCGCCGGATCCTCCGCCGCGGCCCCGCG 337
************************************************************
consensus_4252#0 CCGCCTTCGTGGGGAGCTCGTCGTCAGGGACGCTATTCCGTATGCCGGGGTGGCTCCTCC 420
consensus_4252#1 CCGCCTTCGTGGGGAGCTCGTCGTCAGGGACGCTATTCCGTATGCCGGGGTGGCTCCTCC 397
************************************************************
consensus_4252#0 GCCGCCCGCGCTGCCGCTGCCGCAGCCGCAGCTGCAGCCGCAGGTGCAGGCTACGACGAG 480
consensus_4252#1 GCCGCCCGCGCTGCCGCTGCCGCAGCCGCAGCTGCAGCCGCAGGTGCAGGCTACGACGAG 457
************************************************************
consensus_4252#0 TGGGGGCGGCGGCGGGGGGAAGATTAGCCCCGCGGTGCTGTTCATCATCGTGATTCTCGC 540
consensus_4252#1 TGGGGGCGGCGGCGGGGGGAAGATTAGCCCCGCGGTGCTGTTCATCATCGTGATTCTCGC 517
************************************************************
consensus_4252#0 GGTGGTGTTCTTCATCTCCGGCTTGCTCCACCTCCTGGTGCGGCTACTCATGAAGAAGCA 600
consensus_4252#1 GGTGGTGTTCTTCATCTCCGGCTTGCTCCACCTCCTGGTGCGGCTACTCATGAAGAAGCA 577
************************************************************
consensus_4252#0 GCATCGCCGCGGAGGAGGAGGGGGTGCGGCGGCCGGGGTGTCGCGGTCGGCCGCCGGGGA 660
consensus_4252#1 GCATCCCCGCCGAGGAGGAGGGGGTGCGCATCCC----CTCCGTAGCCTTGTGCCCGGGA 633
***** **** ***************** ** ** * * *** ****
consensus_4252#0 TGACGCGGGGGGAGGAGGGGACGCGGCGCTGCAGCGGCAGCTGCAGCAGCTGTTCCACCT 720
consensus_4252#1 TATCC-------------GAATCCGTTATCGCAAT-----CTTCAGACAGCCTCCCTTCT 675
* * * * ** *** ** *** * ** **
consensus_4252#0 TCACGACTCCGGGCTGGACCAGGCGTTCATCGACGCGCTGCCGGTGTTCGCCTACCGGGA 780
consensus_4252#1 TCCAACCCCTCATCGAAATCAAACAT---------------------------------- 701
** * * * * ** * *
consensus_4252#0 GATCGTCGTGGGCGGCGGCGGCGACGGCGACAAGGAGCCCTTCGACTGCGCGGTGTGCCT 840
consensus_4252#1 ------------------------------------------------------------
consensus_4252#0 GTGCGAGTTCGACGCCGAGGACCGCCTCCGGCTGCTGCCGCTGTGCGGGCACGCCTTCCA 900
consensus_4252#1 ------------------------------------------------------------
consensus_4252#0 CCTGCATTGCATCGACACATGGCTGCTGTCCAACTCCACCTGCCCGCTCTGTCGCGGGGT 960
consensus_4252#1 ------------------------------------------------------------
consensus_4252#0 GCTCTTTGTCCCTGGGCTCACGGAGAACAATCCGATGTTTGATTTCGATGAGGGGTTGGA 1020
consensus_4252#1 ------------------------------------------------------------
consensus_4252#0 AGAAGGGAGGCTGTCTGAAGATTGCGATAACGGATTCGGATATCCCGGGCACAAGGCTAC 1080
consensus_4252#1 ------------------------------------------------------------
consensus_4252#0 GGAGGGGATGCAGACGCCAGGGACTGAGAAGAGGGTGTTCCCTGTGAGGCTTGGGAAGTT 1140
consensus_4252#1 ------------------------------------------------------------
consensus_4252#0 CAAGAATGTCGGGACCCAGGGCGCTGTCGAAGGCGGTGGCATCGGCAATGCCAATGGTGC 1200
consensus_4252#1 ------------------------------------------------------------
consensus_4252#0 TGTCTTGAGGAGAGAGGAAGGGGAGAGCAGCAGCAGCAGCTTGGATGCAAGGAGATGCTT 1260
consensus_4252#1 ------------------------------------------------------------
consensus_4252#0 CTCAATGGGGACTTACCAGTATGTTCTAGGGACCTCAGAGCTCAGGGTGTCTCTCCAGCC 1320
consensus_4252#1 ------------------------------------------------------------
consensus_4252#0 AGACCGAATTAGAAATGGCGGCGGCGGTGTGACGAGGGCAAGGCCGACAGGGTTAAGCTC 1380
consensus_4252#1 ------------------------------------------------------------
consensus_4252#0 TGTCAATGCTGAGATCATGGAGGGGAAGAAGATATGCGCACGGAACAAAGGGGAGAGCTT 1440
consensus_4252#1 ------------------------------------------------------------
consensus_4252#0 CTCTGTGTCGAAGATTTGGCAGTGGTCTAATCTGAAGGGCAAGCTACCTACTGGCTCAGA 1500
consensus_4252#1 ------------------------------------------------------------
consensus_4252#0 TGAATGTTCGGAAGCAGGGAGCCTTCCATGGATGAAGAGAGGTGGCATTGGGGATACATC 1560
consensus_4252#1 ------------------------------------------------------------
consensus_4252#0 AAATATGTGACTGTAGTCTGTATTATGATAGTGGCTAATCTTTTCTCTTGTTGGTGCTGC 1620
consensus_4252#1 ------------------------------------------------------------
consensus_4252#0 TCACTTAATCTCTTACCTATAGTTATCTTGACTTTTTTCAGTCTGATTGCTTAGTGCTGA 1680
consensus_4252#1 ------------------------------------------------------------
consensus_4252#0 GTTTGATTGAAGGGCATTAATCCCATGGAGCGATAATTTCTCAAAAAAAAAGG 1733
consensus_4252#1 -----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||