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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4262#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1102 fasta sequence
[GCAAAACCCAAAACTCCCCTGCCCCATCACCGCCGTCTGCCCGTCTTCATCCACCCAACCATGGCCGCCGCCGCCGCCGCCGATTCCACTTCGGCGGTGCCACCCGCCGTGGTGTCCGCCGCCGAGGACACCCTCGCGGCCGCCGAGTCCGTCGGGGACCACCTCGCCGAGATGGTCGCGGCGGCGGGCGAGGACCCCGACGCCATCGCCGAGCTCCCGCCGCTGCGCCGCGCGCGCGCGTTTCTCGCCATGGCGAAGGCCGCCGCCTCCCTCTTCGCAGTGCGGCTTAGGTGTTCGGGAGTTGATCCGGATGAACACCCTATCAAGAAGGAGTTTGAGAGGTTAAGCTTGTGGGAGGAAAAGTTAAATCGATTTGAGGACTGGGACAAGGCAGCATTGCGCCCAACCACTACAGTGAATACACAGGCAGCAGCAAGGTTCATTGGTCACTCATTGCCCCATTTGACAACTGATCAGAAGAGGAGCATGCAGGCAATCAGTAGAGGAGAAGGAGGGAGTTACTCTGGGAACAAGAGAAAACCACAACCACCGCGGCCAAATAAGAAGTCTGTTCGTGCTGCCACGGAAGAATTCCTTGCAAAAGCAGCTCTGGAGCTTAGTGGGCATAATGATAGCAAGGTGAAGGGCCCTATTAGGCTCCTCTCTGATGAAGATGAGGACTAAGATTGTGTATTGTTGGTTTTATCCAGGGATGAAATACTAGCTGCCTACTTCAAAGAATGGATAAAGTGCGGTATAACTTACTCTGCAATCAAGAAAATTTTGCTTAGTTGTGCTGTGGTGTACATACCAAGGCAGAATGAAGTAGACAAGCTAGATGTAAACTGTAATAGTTATTATCTTTGCCTTGAGAGCAATATTGTAGTCCTGTCTGAATGTCATTTTCAGAAGGAAATTTTGACTGTTTTTAGTTAAAGCACTGACCCTCGAATGGCAGTTGAGTCCATTGCTGAAGATTTGATCTAGTGGTGTTTGAGACTGTTTAACATCGCCGTAGCGTGAATGTTGCCAAAGTAGTCTGCTTGTCCAGTTCGTGTGAGTGCTTGTATGATGTATTATATTTTTCTTTAGTGAACAGCCT]
[+] EMBL AK101221 [GCAAAACCCAAAACTCCCCTGCCCCATCACCGCCGTCTGCCCGTCTTCATCCACCCAACCATGGCCGCCGCCGCCGCCGCCGATTCCACTTCGGCGGTGCCACCCGCCGTGGTGTCCGCCGCCGAGGACACCCTCGCGGCCGCCGAGTCCGTCGGGGACCACCTCGCCGAGATGGTCGCGGCGGCGGGCGAGGACCCCGACGCCATCGCCGAGCTCCCGCCGCTGCGCCGCGCGCGCGCGTTTCTCGCCATGGCGAAGGCCGCCGCCTCCCTCTTCGCAGTGCGGCTTAGGTGTTCGGGAGTTGATCCGGATGAACACCCTATCAAGAAGGAGTTTGAGAGGTTAAGCTTGTGGGAGGAAAAGTTAAATCGATTTGAGGACTGGGACAAGGCAGCATTGCGCCCAACCACTACAGTGAATACACAGGCAGCAGCAAGGTTCATTGGTCACTCATTGCCCCATTTGACAACTGATCAGAAGAGGAGCATGCAGGCAATCAGTAGAGGAGAAGGAGGGAGTTACTCTGGGAACAAGAGAAAACCACAACCACCGCGGCCAAATAAGAAGTCTGTTCGTGCTGCCACGGAAGAATTCCTTGCAAAAGCAGCTCTGGAGCTTAGTGGGCATAATGATAGCAAGGTGAAGGGCCCTATTAGGCTCCTCTCTGATGAAGATGAGGACTAAGATTGTGTATTGTTGGTTTTATCCAGGGATGAAATACTAGCTGCCTACTTCAAAGAATGGATAAAGTGCGGTATAACTTACTCTGCAATCAAGAAAATTTTGCTTAGTTGTGCTGTGGTGTACATACCAAGGCAGAATGAAGTAGACAAGCTAGATGTAAACTGTAATAGTTATTATCTTTGCCTTGAGAGCAATATTGTAGTCCTGTCTGAATGTCATTTTCAGAAGGAAATTTTGACTGTTTTTAGTTAAAGCACTGACCCTCGAATGGCAGTTGAGTCCATTGCTGAAGATTTGATCTAGTGGTGTTTGAGACTGTTTAACATCGCCGTAGCGTGAATGTTGCCAAAGTAGTCTGCTTGTCCAGTTCGTGTGAGTGCTTGTATGATGTATTATATTTTTCTTTAGTGAACAGCCT]
[+] EMBL CB682990 [ CTCTGATGAAGATGAGGACTAAGATTGTGTATTGTTGGTTTTATCCAGAGATGAAATACTAGCTGCCTACTTCAAAGAATGGATAAAGTGCGGTATAACTTACTCTGCAATCAAGAAAATTTTGCTTAGTTGTGCTGTGGTGTACATACCAAGGCAGAATGAAGTAGACAAGCTAGATGTAAACTGTAATAGTTATTATCTTTGCCTTGAGAGCAATATTGTAGTCCTGTCTGAATGTCATTTTCAGAAGGAAATTTTGACTGTTTTTAGTTAAAGCACTGACCCTCGAATGGCAGTTGAGTCCATTGCTGAAGATTTGATCTAGTGGTGTTTGAGACTGTTTAACATCGCCGTAGCGT ]
consensusID : consensus_4262#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence
[GGGGCTAACTTGAGGTGCGAGTCCGTCGGGGACCACCTCGCCGAGATGGTCGCGGCGGCGGGCGAGGACCCCGACGCCATCGCCGAGCTCCCGCCGCTGCGCCGCGCGCGCGCGTTTCTCGCCATGGCGAAGGCCGCCGCCTCCCTCTTCGCAGGCAGGCAGCTCTCGCGGTGACCCCCTTCCCGTTATGACTGCGTGACCCGCATCGCTTCTGACCAAATGTTTTTATTACTATTATTATTATTGTTGCACGTGCGGCTTAGGTGTTCGGGAGTTGATCCGGATGAACACCCTATCAAGACGGAGTTTGTAAGCTCTCTCTCTATATATATATATACTCCTGCCCCGAATCCTATCTACTTCTATATTGTTCTCACATTCTATAGTAGTAGACATTCGGTTTCAGCTTTGCCAATAAGAACAACCGTTTGGGTGTATCCTTATATAGGTTTCTAATTTATGTTAACACTTTCTAATCGGGAATCTTTGTACCATGCCATATTCTTGTAACGACGCGTCATGGACTTATTTTATACCCTGTATTTAGACCAAGGCAAACCACCCTGCTTTCATCCCAAGCAAATAACGAGGTTCGGCACAGTAGCATCAGAAACCACA]
[+] EMBL CB966395 [GGGGCTAACTTGAGGTGCGAGTCCGTCGGGGACCACCTCGCCGAGATGGTCGCGGCGGCGGGCGAGGACCCCGACGCCATCGCCGAGCTCCCGCCGCTGCGCCGCGCGCGCGCGTTTCTCGCCATGGCGAAGGCCGCCGCCTCCCTCTTCGCAGGCAGGCAGCTCTCGCGGTGACCCCCTTCCCGTTATGACTGCGTGACCCGCATCGCTTCTGACCAAATGTTTTTATTACTATTATTATTATTGTTGCACGTGCGGCTTAGGTGTTCGGGAGTTGATCCGGATGAACACCCTATCAAGACGGAGTTTGTAAGCTCTCTCTCTATATATATATATACTCCTGCCCCGAATCCTATCTACTTCTATATTGTTCTCACATTCTATAGTAGTAGACATTCGGTTTCAGCTTTGCCAATAAGAACAACCGTTTGGGTGTATCCTTATATAGGTTTCTAATTTATGTTAACACTTTCTAATCGGGAATCTTTGTACCATGCCATATTCTTGTAACGACGCGTCATGGACTTATTTTATACCCTGTATTTAGACCAAGGCAAACCACCCTGCTTTCATCCCAAGCAAATAACGAGGTTCGGCACAGTAGCATCAGAAACCACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4262#0 GCAAAACCCAAAACTCCCCTGCCCCATCACCGCCGTCTGCCCGTCTTCATCCACCCAACC 60
consensus_4262#1 ------------------------------------------------------------
consensus_4262#0 ATGGCCGCCGCCGCCGCCGCCGATTCCACTTCGGCGGTGCCACCCGCCGTGGTGTCCGCC 120
consensus_4262#1 ------------------------------------------------------------
consensus_4262#0 GCCGAGGACACCCTCGCGGCCGCCGAGTCCGTCGGGGACCACCTCGCCGAGATGGTCGCG 180
consensus_4262#1 ----GGGGCTAACTTGAGGTG--CGAGTCCGTCGGGGACCACCTCGCCGAGATGGTCGCG 54
** * ** * ** *************************************
consensus_4262#0 GCGGCGGGCGAGGACCCCGACGCCATCGCCGAGCTCCCGCCGCTGCGCCGCGCGCGCGCG 240
consensus_4262#1 GCGGCGGGCGAGGACCCCGACGCCATCGCCGAGCTCCCGCCGCTGCGCCGCGCGCGCGCG 114
************************************************************
consensus_4262#0 TTTCTCGCCATGGCGAAGGCCGCCGCCTCCCTCTTCGCAGTGCGGCTTAGGTGTTCGGGA 300
consensus_4262#1 TTTCTCGCCATGGCGAAGGCCGCCGCCTCCCTCTTCGCAGGCAGGCA-----GCTCTCGC 169
**************************************** *** * ** *
consensus_4262#0 GTTGATCCGGATGAACACCCTATCAAGAAGGAGTTTGAGAGGTTAAGCTTGTGGGAGGAA 360
consensus_4262#1 GGTGACCCC------CTTCCCGTTATGACTGCG--TGACCCGCATCGCTTCTGACCAAAT 221
* *** ** * ** * * ** * * *** * **** ** *
consensus_4262#0 AAGTTAA--ATCGATTTGAGGACTGGGACAAG-GCAGCATTG-CGCCCAACCACTACAGT 416
consensus_4262#1 GTTTTTATTACTATTATTATTATTGTTGCACGTGCGGCTTAGGTGTTCGGGAGTTGATCC 281
** * * * * * * ** ** * ** ** * * * * *
consensus_4262#0 GAATACACAGGCAGCAGCAAGGTTCA-TTGGTCACTCATTGCCCCATTTGACAACTGATC 475
consensus_4262#1 GGATGAACA--CCCTATCAAGACGGAGTTTGTAAGCTCTCTCTCTATAT-ATATATATAC 338
* ** *** * * **** * ** ** * * * * ** * * * * *
consensus_4262#0 AGAAGAGGAGCATGCAGGCAATCAGTAGAGGAGAAGGAGGGAGTTACTCTGGGAACAAGA 535
consensus_4262#1 TCCTGCCCCGAATCCTATCTACTTCTATATTGTTCTCA------CATTCTAT-AGTAGTA 391
* * ** * * * ** * * * *** * * *
consensus_4262#0 GAAAACCACAACCACCGCGGCCAAATAAGAAGTCTGTTCGTGCTGCCACGGAAGAATTCC 595
consensus_4262#1 GACATTCGGTTTCAGCTTTGCCAATAAGAACAACCGTTTGGGT-----------GTATCC 440
** * * ** * ***** * * * *** * * ***
consensus_4262#0 TTGCAAAAGCAGCTCTGGAGCTTAGTGG-GCATAATGATAGCAAGGTGAAGGGCCCTATT 654
consensus_4262#1 TTATATAGGT--TTCTAATTTATGTTAACACTTTCTAATCGGGAATCTTTGTACCATGCC 498
** * * * *** * * * * * ** * * * ** *
consensus_4262#0 AGGCTCCTCTCTGATGAAGATGAGGACTAAGATTGTGTATTGTTGGTTTTATCCAGGGAT 714
consensus_4262#1 ATATTCTTGTAACGACGCGTCATGGACTTATTTTATACCCTGT--ATTTAGACCAAGG-C 555
* ** * * * ***** * ** * *** *** *** **
consensus_4262#0 GAAATACTAGCTGCCTACTTCAAAGAATGGATAAAGTGCGGTATAACTTACTCTGCAATC 774
consensus_4262#1 AAACCACCCTGCTTTCATCCCAAGCAAATAACGAGGTTCGGCACAGTAGCATCAGAAACC 615
** ** * *** ** * * ** *** * * ** * ** *
consensus_4262#0 AAGAAAATTTTGCTTAGTTGTGCTGTGGTGTACATACCAAGGCAGAATGAAGTAGACAAG 834
consensus_4262#1 ACA--------------------------------------------------------- 618
*
consensus_4262#0 CTAGATGTAAACTGTAATAGTTATTATCTTTGCCTTGAGAGCAATATTGTAGTCCTGTCT 894
consensus_4262#1 ------------------------------------------------------------
consensus_4262#0 GAATGTCATTTTCAGAAGGAAATTTTGACTGTTTTTAGTTAAAGCACTGACCCTCGAATG 954
consensus_4262#1 ------------------------------------------------------------
consensus_4262#0 GCAGTTGAGTCCATTGCTGAAGATTTGATCTAGTGGTGTTTGAGACTGTTTAACATCGCC 1014
consensus_4262#1 ------------------------------------------------------------
consensus_4262#0 GTAGCGTGAATGTTGCCAAAGTAGTCTGCTTGTCCAGTTCGTGTGAGTGCTTGTATGATG 1074
consensus_4262#1 ------------------------------------------------------------
consensus_4262#0 TATTATATTTTTCTTTAGTGAACAGCCT 1102
consensus_4262#1 ----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||